mRNA_S-firma_M_contig9501.20492.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9501.20492.1
Unique NamemRNA_S-firma_M_contig9501.20492.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9501.20492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9501contigS-firma_M_contig9501:411..1514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue3.7e-10
Seed eggNOG ortholog2880.D7FVX5
Preferred nameSLITRK2
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026
EggNOG free text desc.positive regulation of synapse assembly
EggNOG OGs2CMPC@1,2QR6C@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size218
Cds size216
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9501.20492.1prot_S-firma_M_contig9501.20492.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9501 411..1513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828784.9822388-CDS-S-firma_M_contig9501:410..4571622828784.9822388-CDS-S-firma_M_contig9501:410..457Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9501 411..457 +
1697105161.0359793-CDS-S-firma_M_contig9501:410..4571697105161.0359793-CDS-S-firma_M_contig9501:410..457Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9501 411..457 +
1622828784.9961052-CDS-S-firma_M_contig9501:728..8701622828784.9961052-CDS-S-firma_M_contig9501:728..870Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9501 729..870 +
1697105161.052704-CDS-S-firma_M_contig9501:728..8701697105161.052704-CDS-S-firma_M_contig9501:728..870Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9501 729..870 +
1622828785.0079849-CDS-S-firma_M_contig9501:1486..15131622828785.0079849-CDS-S-firma_M_contig9501:1486..1513Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9501 1487..1513 +
1697105161.062691-CDS-S-firma_M_contig9501:1486..15131697105161.062691-CDS-S-firma_M_contig9501:1486..1513Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9501 1487..1513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9501.20492.1

>prot_S-firma_M_contig9501.20492.1 ID=prot_S-firma_M_contig9501.20492.1|Name=mRNA_S-firma_M_contig9501.20492.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=72bp
ALKVVFVGAYGAGKTSLARSIKMGRGDRTPEVDENTRTTVGVDLHSHILR
NGTECKIYDVAGQITYYGLHQF
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mRNA from alignment at S-firma_M_contig9501:411..1514+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9501.20492.1 ID=mRNA_S-firma_M_contig9501.20492.1|Name=mRNA_S-firma_M_contig9501.20492.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1104bp|location=Sequence derived from alignment at S-firma_M_contig9501:411..1514+ (Sphaerotrichia firma Sfir_13m male)
GCCCTCAAGGTTGTTTTTGTCGGAGCGTACGGGGCGGGCAAGACAAGGTG
AACAGGTGCAGGGCGCAGTATGACGCACCCCACTGCGAAACTTCGTGGTT
GCTCGTTCATGCTGTACTTCTCTCACTGGATCCTGGCCCATTTCGTATTT
TCCTACTTCCCGGGATACCGGTGAAGATCTATGCGTTTGTGAACCGCCTT
CCACATCCATCAACAACCTGAATCTTTATGAACACCTAAGTGTCTCCCAA
ACATGTTTTTTGTTCTTCTGGCATTTTCGTGTCTCACCATCTGCGTTGTT
TTACTACGACCAACACAGCCTTGCGAGGAGCATCAAAATGGGACGCGGGG
ACAGAACGCCCGAGGTAGACGAGAACACAAGAACTACCGTTGGCGTCGAT
CTTCACAGCCATATCCTGAGGAACGGCACGGAGTGCAAGATCTATGACGT
CGCTGGACAGGTGTCTTCAATGTTGTTATTTTGTTCGGCAGGGCGGTCCT
TGTTTTGAATTGCTTTGCCCTTCGTACCGGACAATGCGTCGTACGAGGGG
AAGCCTTGTTTGAGAGGCTTGGTGGACTGATGCAGAGTCGGCGATTCCTG
TTTTTTTCAGACGTGAGACCAACTTTGCGATGAACCCAACCCGTGATGAG
GAGAACTGCAACTGCAGTGTTCTTACCTTGTGCGGAGGTCGTGGTTTAGT
CTTGGGCCGTGCGTATCAAGCTTATTGTGGATCAAGATTCTCCTGTTTGC
CACGGTGTTTAATTCTTGCGCTTCGTGTGTCAGAGGCGTCTTATATTCCG
TACCCAACCAAGCGTAGAATTCGACGCTCTCTTGCTGTGTGGAACATCCT
CTTTCGTGTTCGTCCGCCCGTATGTTGCTGGGTACCTGTCCTGACCGTCG
CGAAGCTATGCTGATTGTGCTGAGCACTTTCGTGACGACACTGCCGCGCG
ATTTCCCCCGGGGATTGGAGTTTTGAATGCAACCCACGAGAACCAACCCG
CAATGAGCGTGCGATGCGTGACAAATGTTCCACTACTAACCTTTGTTTCC
ACCGCCTTGCGGCCGCCGTTCCCCAGATCACCTACTACGGCTTGCACCAG
TTCT
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Coding sequence (CDS) from alignment at S-firma_M_contig9501:411..1514+

>mRNA_S-firma_M_contig9501.20492.1 ID=mRNA_S-firma_M_contig9501.20492.1|Name=mRNA_S-firma_M_contig9501.20492.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=432bp|location=Sequence derived from alignment at S-firma_M_contig9501:411..1514+ (Sphaerotrichia firma Sfir_13m male)
GCCCTCAAGGTTGTTTTTGTCGGAGCGTACGGGGCGGGCAAGACAAGGCC
CTCAAGGTTGTTTTTGTCGGAGCGTACGGGGCGGGCAAGACAAGCCTTGC
GAGGAGCATCAAAATGGGACGCGGGGACAGAACGCCCGAGGTAGACGAGA
ACACAAGAACTACCGTTGGCGTCGATCTTCACAGCCATATCCTGAGGAAC
GGCACGGAGTGCAAGATCTATGACGTCGCTGGACAGCCTTGCGAGGAGCA
TCAAAATGGGACGCGGGGACAGAACGCCCGAGGTAGACGAGAACACAAGA
ACTACCGTTGGCGTCGATCTTCACAGCCATATCCTGAGGAACGGCACGGA
GTGCAAGATCTATGACGTCGCTGGACAGATCACCTACTACGGCTTGCACC
AGTTCATCACCTACTACGGCTTGCACCAGTTC
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