mRNA_S-firma_M_contig95.20485.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig95.20485.1 vs. uniprot
Match: D7G6G6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6G6_ECTSI) HSP 1 Score: 645 bits (1664), Expect = 1.120e-223 Identity = 379/666 (56.91%), Postives = 421/666 (63.21%), Query Frame = 3
Query: 33 MEGLLKDGLLQLLQYFHNPELVGSLLLLYVFHVVGLTVNIPHLFLNGLKFIVAPTEEAVLRIRSDAKGPRPDPLGQLDREGKEANAYDKMDALSLARMEISRGTVGTLMYFPHYEGMVWWSLVGLGNFFIAQGSRCAIPTQ---------------------------------------------------------------------------------------RPLGWASVTLCAALLRAWWCNVRLVYLLGSGNDHSKFAVLCGFCGMFAAAGAGAMFPPGFFAFDLRAAAVALHAWGRGAAGAAAGLFLSSTAXXXXXXXXXXXXXXXXXGISEEDFVALFLPVAVFTAACVTAAAALPAIRFAQYFVRALEPGSGASFVYRALLVVDVLLPWLATLVWISAVPPLFLGWWGGAGEEETLGDGTGLALRVWVTGSAAAARLLVGRFQIQAYLEGAKESVLKDLRQRKVNAHMVRSKFDARFQYLIIAAAQYAAPALTVIFSLAILVHIGXXXXXXXXXXXXXXXXXXXXGGFAAGDVGAGENRLGLCDAARRIVGLEPWDAAFAAAAAVVEKSGAAGSE--------GGSVASSGGLAGCLRNMPAFPEAFWSGVAGFLAWWACLSWAVTYATGVVFWRVYPEDVSAVEISRSDTTTKG 1745
MEG + D LL+LL+YFHNPELVGSLLLLYV HVVG TVNIPHLFLNGLKFIVAPT+EAVLRIRSDAKGPRP+PLGQLDREGK+ANAYDKMDAL LARME+SRGT+G LMYFP YEGMV W+++ LGNFFIAQGSRCAIPTQ RPLGWAS+TLC ALLR WWCNVRL+YLLG ND+SKFA+L GFCG+FAAA AM PP F AFD+RAAA ALHAWG G S A +S EDF+A+FLP AACVTAAAALPAIRF+QYF RAL GSGA+ VYRALLVVD +LPWLA+LVWIS VPPL LG G G+ G LALRV VTG AA ARL VG+ Q+QAYLEG KESVL DLR++KV++ VRSKFDAR QYL+IAAAQYAAPALTV+FSLA+LVH+G GG A G G LG+CDAARR+VGLE W AFAAAA E + GG GGLA + +P FPEAFWSGV GFLAWWACLSWAVTYA GV FW V+PEDVS E +D TTKG
Sbjct: 1 MEGPVADALLKLLRYFHNPELVGSLLLLYVVHVVGFTVNIPHLFLNGLKFIVAPTQEAVLRIRSDAKGPRPEPLGQLDREGKDANAYDKMDALGLARMEVSRGTLGGLMYFPQYEGMVLWAVIALGNFFIAQGSRCAIPTQTKCEHRGSAKKEKSPRSGAFCTANLVHSLPSAFFDALRCPPTSSFGVPIAHLDSCLLLLPQTPFTPSFSLALFDVLLLLWRDPSGGGRPLGWASLTLCGALLRCWWCNVRLIYLLGLNNDYSKFALLSGFCGLFAAAAVAAMLPPSFLAFDVRAAAAALHAWGGAVRGG------SDAAVPPGGVSAV---------VSREDFLAMFLPTVAVVAACVTAAAALPAIRFSQYFSRALGRGSGATLVYRALLVVDGVLPWLASLVWISEVPPLVLGERWGGGDA-----GRALALRVGVTGLAAWARLAVGKLQLQAYLEGVKESVLVDLREKKVDSQSVRSKFDARLQYLVIAAAQYAAPALTVLFSLALLVHVGDAAT----------------GGDLASGTG-GRAGLGVCDAARRVVGLESWGTAFAAAAGAAEAPNSXXXXXXXXXXGLGG-----GGLAAFISTIPEFPEAFWSGVTGFLAWWACLSWAVTYAVGVAFWFVFPEDVSVTERVPTDRTTKG 624 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig95.20485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig95.20485.1 >prot_S-firma_M_contig95.20485.1 ID=prot_S-firma_M_contig95.20485.1|Name=mRNA_S-firma_M_contig95.20485.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=593bp MEGLLKDGLLQLLQYFHNPELVGSLLLLYVFHVVGLTVNIPHLFLNGLKFback to top mRNA from alignment at S-firma_M_contig95:31259..37160+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig95.20485.1 ID=mRNA_S-firma_M_contig95.20485.1|Name=mRNA_S-firma_M_contig95.20485.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=5902bp|location=Sequence derived from alignment at S-firma_M_contig95:31259..37160+ (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig95:31259..37160+ >mRNA_S-firma_M_contig95.20485.1 ID=mRNA_S-firma_M_contig95.20485.1|Name=mRNA_S-firma_M_contig95.20485.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=3558bp|location=Sequence derived from alignment at S-firma_M_contig95:31259..37160+ (Sphaerotrichia firma Sfir_13m male)back to top |