mRNA_S-firma_M_contig95.20480.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig95.20480.1
Unique NamemRNA_S-firma_M_contig95.20480.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig95.20480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig95contigS-firma_M_contig95:2341..3079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size413
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig95.20480.1prot_S-firma_M_contig95.20480.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig95 2341..2646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828783.2968218-CDS-S-firma_M_contig95:2340..26461622828783.2968218-CDS-S-firma_M_contig95:2340..2646Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig95 2341..2646 -
1697105160.0466816-CDS-S-firma_M_contig95:2340..26461697105160.0466816-CDS-S-firma_M_contig95:2340..2646Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig95 2341..2646 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828783.3107789-UTR-S-firma_M_contig95:2646..26711622828783.3107789-UTR-S-firma_M_contig95:2646..2671Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig95 2647..2671 -
1697105160.0577726-UTR-S-firma_M_contig95:2646..26711697105160.0577726-UTR-S-firma_M_contig95:2646..2671Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig95 2647..2671 -
1622828783.3257911-UTR-S-firma_M_contig95:2997..30791622828783.3257911-UTR-S-firma_M_contig95:2997..3079Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig95 2998..3079 -
1697105160.068373-UTR-S-firma_M_contig95:2997..30791697105160.068373-UTR-S-firma_M_contig95:2997..3079Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig95 2998..3079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig95.20480.1

>prot_S-firma_M_contig95.20480.1 ID=prot_S-firma_M_contig95.20480.1|Name=mRNA_S-firma_M_contig95.20480.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=102bp
MDQQQSRTGGSPFESSQKLSQGRHLVGRIVAQSTGGVATKTTAAAAAAAA
AGTGQSCVPSPSSRPPPASVGDHELDHRVAMPRPRRSWDTAFLASTVSSN
NS
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mRNA from alignment at S-firma_M_contig95:2341..3079-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig95.20480.1 ID=mRNA_S-firma_M_contig95.20480.1|Name=mRNA_S-firma_M_contig95.20480.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=739bp|location=Sequence derived from alignment at S-firma_M_contig95:2341..3079- (Sphaerotrichia firma Sfir_13m male)
CGGTAGTCTGTGACGTGCACCCGTCGCACACACGGAGCAACTACAAAGAA
AGACTAACGTGGACGCAATTGCCTCTCTCAAGGTAGGTCCTTCTTTTTCA
TAAACAAGCGTAGAACGTGTTTCTGATGAGGCCCCCACATTCATTTCCGC
GGTGCGGATTTGAAAATTTGAATCTACACAGTCTACACAGCACCACAGCC
GCTCTACGTTTCTTCTCCTACTCCTTTATGGGTGTGGAGAGCTTACGCTT
TACTAGCAGCTGCCGTCCTATCCCAGCGTGGCTTCCTGCGTGTAGCAGTC
GAACGCAAGCCAACCCCATGCCTCGACTTGAAGCTAAAGAGTCCCACTAT
GTAGTAACACTGCTGTGACCCACAAACACCACCTCCCTTCGTTCTCTGAG
CTCTGTAGGTGACACAACTCGCGCAAGAGAGTGATGGACCAGCAACAAAG
CAGGACTGGCGGGTCTCCTTTCGAGTCGTCTCAAAAGCTCTCCCAGGGCC
GCCACCTCGTCGGGCGAATCGTGGCGCAATCAACCGGAGGGGTTGCAACA
AAGACGACCGCAGCAGCAGCAGCAGCAGCAGCCGCAGGAACCGGACAAAG
CTGCGTCCCGTCGCCATCGTCGCGCCCCCCTCCAGCTTCAGTCGGCGACC
ACGAGCTCGACCACCGCGTCGCCATGCCCCGCCCACGGCGTTCCTGGGAC
ACCGCCTTCCTCGCAAGCACGGTCAGCAGCAACAACAGC
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Coding sequence (CDS) from alignment at S-firma_M_contig95:2341..3079-

>mRNA_S-firma_M_contig95.20480.1 ID=mRNA_S-firma_M_contig95.20480.1|Name=mRNA_S-firma_M_contig95.20480.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=612bp|location=Sequence derived from alignment at S-firma_M_contig95:2341..3079- (Sphaerotrichia firma Sfir_13m male)
ATGGACCAGCAACAAAGCAGGACTGGCGGGTCTCCTTTCGAGTCGTCTCA
AAAGCTCTCCCAGGGCCGCCACCTCGTCGGGCGAATCGTGGCGCAATCAA
CCGGAGGGGTTGCAACAAAGACGACCGCAGCAGCAGCAGCAGCAGCAGCC
GCAGGAACCGGACAAAGCTGCGTCCCGTCGCCATCGTCGCGCCCCCCTCC
AGCTTCAGTCGGCGACCACGAGCTCGACCACCGCGTCGCCATGCCCCGCC
CACGGCGTTCCTGGGACACCGCCTTCCTCGCAAGCACGGTCAGCAGCAAC
AACAGCATGGACCAGCAACAAAGCAGGACTGGCGGGTCTCCTTTCGAGTC
GTCTCAAAAGCTCTCCCAGGGCCGCCACCTCGTCGGGCGAATCGTGGCGC
AATCAACCGGAGGGGTTGCAACAAAGACGACCGCAGCAGCAGCAGCAGCA
GCAGCCGCAGGAACCGGACAAAGCTGCGTCCCGTCGCCATCGTCGCGCCC
CCCTCCAGCTTCAGTCGGCGACCACGAGCTCGACCACCGCGTCGCCATGC
CCCGCCCACGGCGTTCCTGGGACACCGCCTTCCTCGCAAGCACGGTCAGC
AGCAACAACAGC
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