mRNA_S-firma_M_contig949.20475.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig949.20475.1
Unique NamemRNA_S-firma_M_contig949.20475.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig949.20475.1 vs. uniprot
Match: D7FJN0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJN0_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 4.020e-52
Identity = 84/118 (71.19%), Postives = 102/118 (86.44%), Query Frame = 1 
Query:  367 RMVVFGDANSDTGRAFDAPSAHQFEEYGIGPFPWTRLYAAPNNSDEKRPAYMPFEGSVTNGRAWPSWLRIPDIHNFATSSATASSAFRSRQSCTSYTGEGEEFPTGTLDEQITRYFHD 720
            +MVVFGD+N+DTGR F+AP++ QFE+ GIGPFPW RLY  P+ SDEK  AYMPFEGSV+NG+AWP+WLRIPD HNFATSS +A+ AFRSR+ CT YTGEGE+FPT TL+EQI RYF++
Sbjct:   44 KMVVFGDSNADTGRRFNAPASFQFEDEGIGPFPWKRLYDGPD-SDEKTAAYMPFEGSVSNGKAWPTWLRIPDEHNFATSSGSATDAFRSRERCTGYTGEGEDFPTATLEEQIDRYFYE 160
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BLAST of mRNA_S-firma_M_contig949.20475.1 vs. uniprot
Match: D7FYC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYC5_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 1.020e-51
Identity = 84/117 (71.79%), Postives = 99/117 (84.62%), Query Frame = 1 
Query:  370 MVVFGDANSDTGRAFDAPSAHQFEEYGIGPFPWTRLYAAPNNSDEKRPAYMPFEGSVTNGRAWPSWLRIPDIHNFATSSATASSAFRSRQSCTSYTGEGEEFPTGTLDEQITRYFHD 720
            MVV GD+NSDTGR F+ P++ QFE+ GIGPFPW R+Y  P+ SDEK  AYMPFEGSVTNG+ WP+WLRIPD HNFATSSATA+ AFRSR+ CT YTGEGE+FPT TL+EQI RYF++
Sbjct:   39 MVVLGDSNSDTGRRFNTPASFQFEDEGIGPFPWKRVYDGPD-SDEKTAAYMPFEGSVTNGKVWPTWLRIPDEHNFATSSATATDAFRSRERCTGYTGEGEDFPTATLEEQIDRYFYE 154
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BLAST of mRNA_S-firma_M_contig949.20475.1 vs. uniprot
Match: D7FJN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN5_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 4.240e-50
Identity = 83/118 (70.34%), Postives = 101/118 (85.59%), Query Frame = 1 
Query:  367 RMVVFGDANSDTGRAFDAPSAHQFEEYGIGPFPWTRLYAAPNNSDEKRPAYMPFEGSVTNGRAWPSWLRIPDIHNFATSSATASSAFRSRQSCTSYTGEGEEFPTGTLDEQITRYFHD 720
            +MVVFGD+NSDTGR ++AP++ Q +E GIG FPW RLY  P+ SDEK  AYMPFEGSV+NG+AWP+WLRIPD HNFATSSA+A+ AFRSR+ CT YTGEGE+FPT TL+EQI RYF++
Sbjct:   40 KMVVFGDSNSDTGRRYNAPNSFQLKEDGIGAFPWKRLYDGPD-SDEKTSAYMPFEGSVSNGKAWPTWLRIPDEHNFATSSASATDAFRSRERCTGYTGEGEDFPTATLEEQIDRYFYE 156
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BLAST of mRNA_S-firma_M_contig949.20475.1 vs. uniprot
Match: D8LCE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCE7_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 9.840e-39
Identity = 69/122 (56.56%), Postives = 95/122 (77.87%), Query Frame = 1 
Query:  355 RDHERMVVFGDANSDTGRAFDAPSAHQFEEYGIGPFPWTRLYAAPNNSDEKRPAYMPFEGSVTNGRAWPSWLRIPDIHNFATSSATASSAFRSRQSCTSYTGEGEEFPTGTLDEQITRYFHD 720
            R + +MVVFGD+ SDTGR ++AP+++ FE  GIG +PW +LY AP+ S+ K  A++P  GS+TNG+ WP WL +P   NFAT++A+A+  FR+R++C  YTGEGE+ PTGTLDEQITRYF+D
Sbjct:   44 RTNPKMVVFGDSQSDTGRRYNAPASYVFE--GIGVYPWPKLYEAPD-SESKFRAFLPGAGSMTNGKMWPEWLNVPQELNFATATASATETFRTRENCEGYTGEGEDLPTGTLDEQITRYFND 162
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BLAST of mRNA_S-firma_M_contig949.20475.1 vs. uniprot
Match: A0A6H5KTW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW7_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 3.500e-22
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:  370 MVVFGDANSDTGRAFDAPSAHQFEEYGIGPFPWTRLYAAPNN--SD--EKRPAYMPFEGSVTNGRAWPSWLRIPDI 585
            MVVFGD+NSDTG  F+ PS+ QF++ GIG FPW RLY  P+   SD  EK  AYMPF+ S +NG AWP+WLRIPD+
Sbjct:    1 MVVFGDSNSDTGSRFNTPSSFQFKDDGIGAFPWKRLYDGPDRDVSDCVEKTSAYMPFDNSASNGIAWPTWLRIPDV 76
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig949.20475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FJN0_ECTSI4.020e-5271.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FYC5_ECTSI1.020e-5171.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FJN5_ECTSI4.240e-5070.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCE7_ECTSI9.840e-3956.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KTW7_9PHAE3.500e-2261.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig949contigS-firma_M_contig949:9986..12851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size720
Cds size597
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig949.20475.1prot_S-firma_M_contig949.20475.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig949 9986..12728 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828782.7176676-CDS-S-firma_M_contig949:9985..100211622828782.7176676-CDS-S-firma_M_contig949:9985..10021Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig949 9986..10021 -
1697105159.669572-CDS-S-firma_M_contig949:9985..100211697105159.669572-CDS-S-firma_M_contig949:9985..10021Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig949 9986..10021 -
1622828782.730039-CDS-S-firma_M_contig949:10483..105851622828782.730039-CDS-S-firma_M_contig949:10483..10585Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig949 10484..10585 -
1697105159.6820319-CDS-S-firma_M_contig949:10483..105851697105159.6820319-CDS-S-firma_M_contig949:10483..10585Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig949 10484..10585 -
1622828782.744426-CDS-S-firma_M_contig949:11171..112521622828782.744426-CDS-S-firma_M_contig949:11171..11252Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig949 11172..11252 -
1697105159.692686-CDS-S-firma_M_contig949:11171..112521697105159.692686-CDS-S-firma_M_contig949:11171..11252Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig949 11172..11252 -
1622828782.7598574-CDS-S-firma_M_contig949:11567..118191622828782.7598574-CDS-S-firma_M_contig949:11567..11819Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig949 11568..11819 -
1697105159.7023742-CDS-S-firma_M_contig949:11567..118191697105159.7023742-CDS-S-firma_M_contig949:11567..11819Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig949 11568..11819 -
1622828782.775113-CDS-S-firma_M_contig949:12602..127281622828782.775113-CDS-S-firma_M_contig949:12602..12728Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig949 12603..12728 -
1697105159.7130883-CDS-S-firma_M_contig949:12602..127281697105159.7130883-CDS-S-firma_M_contig949:12602..12728Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig949 12603..12728 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828782.7916353-UTR-S-firma_M_contig949:12728..128511622828782.7916353-UTR-S-firma_M_contig949:12728..12851Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig949 12729..12851 -
1697105159.724235-UTR-S-firma_M_contig949:12728..128511697105159.724235-UTR-S-firma_M_contig949:12728..12851Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig949 12729..12851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig949.20475.1

>prot_S-firma_M_contig949.20475.1 ID=prot_S-firma_M_contig949.20475.1|Name=mRNA_S-firma_M_contig949.20475.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=199bp
MHTGPRTFGASLMCCALAVLLRSEALPEGNTTAMQRPNEDKKPSGENDAS
SAKLKACMGSTKQNRRKEVLCRASVAARDHERMVVFGDANSDTGRAFDAP
SAHQFEEYGIGPFPWTRLYAAPNNSDEKRPAYMPFEGSVTNGRAWPSWLR
IPDIHNFATSSATASSAFRSRQSCTSYTGEGEEFPTGTLDEQITRYFHD
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mRNA from alignment at S-firma_M_contig949:9986..12851-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig949.20475.1 ID=mRNA_S-firma_M_contig949.20475.1|Name=mRNA_S-firma_M_contig949.20475.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2866bp|location=Sequence derived from alignment at S-firma_M_contig949:9986..12851- (Sphaerotrichia firma Sfir_13m male)
ACACGCCCGGAAGCACGAAGCGTGGGCGCGTAGCTAGCCTTCCTATCATT
CGTCTGCGCTTCCTCGCCCCCCCCGCCTCCTCTCTGTCCCTCTCTCTTGC
CAGTGACCGCTTCACCGAGGAGAATGCACACTGGACCCAGGACTTTCGGT
GCTTCGCTGATGTGCTGCGCGCTGGCTGTTCTGCTTCGCAGTGAGGCACT
CCCGGAGGGAAACACGACAGCCATGCAGAGGCCCAACGAGGACAAGAAGG
TGTGTGTGCGCGCATGCGTCTGCGCACAGAGTAACCTTTTTTGAACTTGC
TGCTGACTCGGCAGGAGAAGGGCCAAGGTGATGATCGCGACAAAGATTGT
CTTTGATTCCATGATTTTCTTTCAAGAATGCAGCAGCGCTTCAAACACGT
GTGTGCCTGGAGAGGGAACGCCTACCAGCGGAAAGATCCCGAAAGAAGTA
TGTGACTGGGCGCTCGGCATGGTGATGAGGAATTTCCCATGCGTCTGAAT
TTAACTTTCGCCGGGGCAGAACGTCTCACACAGGAAAACCAATGTCCGCG
TTCATCTTCCAGCCACCCCGTAGTTCTCAAAATTTGTTTACGAGTTCAAG
CCAAAACCCTTCAACCTAGCAGCTCATCGAACTCCGTACCGTCGGTTGTC
GACGCCTTGGTAAACTTTGTGAACGCTGACGAAGAAGGTCGTTCAACACT
GCACGTTCAGGTCGTCAACATATCAACAACAGCAGCTTAGGTCGGTTCTG
TAACTCACTCTGGAACAGTCACGACTAAACTCATTCCTTCGAACTGTTCC
CCAGCCCAACGACAGCTTTTTCAGCATACACACGAAACTATTCTCAGAAT
TTTCTACCATTCGTTCTAAAATGGCCGTGTTCATCTGTGTCGAAGCACCG
GTTTTCTTCACTAGACCCCAACCCACACTTGGTAAACACGTCTCCACGAT
CTGATTTCGGCCATTTCATTTTTCGGTCCGATTGCTCCCGCTCGGTCCCG
ACTCTCAATGACTTCCGGTGTTGTGGCGCAAGCCCTCGGGCGAAAATGAC
GCTTCTTCTGCCAAGCTCAAAGCTTGCATGGGATCCACCAAGCAAAACCG
GAGAAAGGAAGTGCTGTGTCGCGCTTCTGTTGCCGCGCGTGATCACGAGC
GGATGGTGGTGTTCGGCGACGCGAACAGTGACACCGGCAGAGCTTTCGAC
GCGCCATCAGCACATCAGTTCGAGGAGTACGGGATCGGTCCGTTCCCTTG
GACGCGGCTCTATGCAGCGCCGAACAACAGTGACGTGAGACATAGTGCCT
TCTTGGACTCCTGATTGTTAGACTTCCCGGATTGAAAAGGAATTCTTCAT
CGCTTCCGGAACACGGGGGGTCGTCATTGACTCTCGGCCCGCGCCATATT
TCATTTCCCTCTCTCATCGGGTGCAGTACCCCTGTGTTTGGCGTATTTTA
GGCTCCTTGAATGTGGAACTTCGATATGGAGTCAAACGCGTAGGCTGGTG
CCGCTGTGAAGTTTTCACGTGCCTGTAACATCCCACTTCGATGTCCCGGT
CACCATTGATTGGTCCTCTCCCACGCCCAATCAACTGCGGCCGCGGCAGG
AAAAACGCCCTGCGTACATGCCCTTCGAAGGCTCTGTGACTAACGGGAGG
GCATGGCCGTCCTGGCTCCGAATACCTGACGTAAGTAGTGGCGATTCTTG
CCTCGATGCTCATCTTCATGCGGGGGATGCTCATTTTCATGCGGGGTTTG
CTGCATGTATCGACCGGCTCATGGGGTTTGTACTCGGAATGTTTTCTTCT
CGTCATCTTTCGTTCTTCGCCATAAACTGCACGTCAGACGAACGTCATTG
TCCCGCAAACGGTGTACACCCCGGGGGGGGCTTCCGAATAGTACACGTAT
GAAGCGCATTTGAAATTGAAGCAAGCGGCCCCGTAGGGAAAAATCGAATA
CGTCCCAGGACGTTTGCCCTGAGAGGACGTTGCGAGCACCCCGGGGCTTT
CTTTCTCTTCTTGTGCTTTCCTGATAGAAGGGAGGCATAGACTAGATGGC
TCTGCAGTTGATAGACCAGATGGCTCGGCAGTTGAAGCGCGCAGGGGTAC
CGAGCGCCCACCATGCACAAACAGCGCACAGTCAAGGCAATTCTATGCAA
ACGAGAGATGTTGCACGCCTTCTTGTGTCAGCAAGAATACAGTTCTAGTC
GCACTTATGCACGCCCCCCACCCTTTTCTTCGCCCGCCGTCGGCTCCAAT
GTACATCGCAAAAAAGATCCACAATTTTGCCACGTCTTCAGCCACTGCTT
CTTCAGCCTTCCGGAGCCGGCAGAGCTGCACATCCTACACAGGGGAAGGG
GAGGAATTCCCCACTGGGGTAAGCATCGCTGCGTTCGTGGAAATAGCGGC
AACACCACCGGCGTTAAGGTGTTAGTTGGTAGGTGCTCTTTAACGTTTGA
CGTTTGACGTGTTCGCAGACTCACAAACATGAACGGTGGACGAAGGCGTT
GGTAGGTGCTCTTTCACGTTTGAAGTGTTCACAGACTCACAAACATGAAC
GGTGGACGAAGTCAGCTTGTAGGTCACGGTACAGGGACAATCTCCAGCCT
CGAGGGAAGGCAGCAAAAAGTTAAGATACGAATATAGACGCCGACTTCGC
GAGTTTTCCGACGAAAGATGGGCAGTACGTGATCTCTAAAACGAACTGGG
TACGACACCCGGGCAGGCGTAGAGATGAAAAGGTGAGAGCATTCGCTCAA
GGCGTATCACCTGCGTTCTTCATCTAGTGTGAGTTGTTATCCAACAGAGC
TCCCATTTTCGACTTGTTTATCTCTGCCAGACCCTGGACGAGCAAATCAC
GCGCTACTTCCACGAC
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Coding sequence (CDS) from alignment at S-firma_M_contig949:9986..12851-

>mRNA_S-firma_M_contig949.20475.1 ID=mRNA_S-firma_M_contig949.20475.1|Name=mRNA_S-firma_M_contig949.20475.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1194bp|location=Sequence derived from alignment at S-firma_M_contig949:9986..12851- (Sphaerotrichia firma Sfir_13m male)
ATGCACACTGGACCCAGGACTTTCGGTGCTTCGCTGATGTGCTGCGCGCT
GGCTGTTCTGCTTCGCAGTGAGGCACTCCCGGAGGGAAACACGACAGCCA
TGCAGAGGCCCAACGAGGACAAGAAGATGCACACTGGACCCAGGACTTTC
GGTGCTTCGCTGATGTGCTGCGCGCTGGCTGTTCTGCTTCGCAGTGAGGC
ACTCCCGGAGGGAAACACGACAGCCATGCAGAGGCCCAACGAGGACAAGA
AGCCCTCGGGCGAAAATGACGCTTCTTCTGCCAAGCTCAAAGCTTGCATG
GGATCCACCAAGCAAAACCGGAGAAAGGAAGTGCTGTGTCGCGCTTCTGT
TGCCGCGCGTGATCACGAGCGGATGGTGGTGTTCGGCGACGCGAACAGTG
ACACCGGCAGAGCTTTCGACGCGCCATCAGCACATCAGTTCGAGGAGTAC
GGGATCGGTCCGTTCCCTTGGACGCGGCTCTATGCAGCGCCGAACAACAG
TGACCCCTCGGGCGAAAATGACGCTTCTTCTGCCAAGCTCAAAGCTTGCA
TGGGATCCACCAAGCAAAACCGGAGAAAGGAAGTGCTGTGTCGCGCTTCT
GTTGCCGCGCGTGATCACGAGCGGATGGTGGTGTTCGGCGACGCGAACAG
TGACACCGGCAGAGCTTTCGACGCGCCATCAGCACATCAGTTCGAGGAGT
ACGGGATCGGTCCGTTCCCTTGGACGCGGCTCTATGCAGCGCCGAACAAC
AGTGACGAAAAACGCCCTGCGTACATGCCCTTCGAAGGCTCTGTGACTAA
CGGGAGGGCATGGCCGTCCTGGCTCCGAATACCTGACGAAAAACGCCCTG
CGTACATGCCCTTCGAAGGCTCTGTGACTAACGGGAGGGCATGGCCGTCC
TGGCTCCGAATACCTGACATCCACAATTTTGCCACGTCTTCAGCCACTGC
TTCTTCAGCCTTCCGGAGCCGGCAGAGCTGCACATCCTACACAGGGGAAG
GGGAGGAATTCCCCACTGGGATCCACAATTTTGCCACGTCTTCAGCCACT
GCTTCTTCAGCCTTCCGGAGCCGGCAGAGCTGCACATCCTACACAGGGGA
AGGGGAGGAATTCCCCACTGGGACCCTGGACGAGCAAATCACGCGCTACT
TCCACGACACCCTGGACGAGCAAATCACGCGCTACTTCCACGAC
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