mRNA_S-firma_M_contig9483.20465.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9483.20465.1
Unique NamemRNA_S-firma_M_contig9483.20465.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9483.20465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9483contigS-firma_M_contig9483:1888..2260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size374
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828782.0300994-CDS-S-firma_M_contig9483:1887..22591622828782.0300994-CDS-S-firma_M_contig9483:1887..2259Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9483 1888..2259 +
1697105159.2656002-CDS-S-firma_M_contig9483:1887..22591697105159.2656002-CDS-S-firma_M_contig9483:1887..2259Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9483 1888..2259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9483.20465.1prot_S-firma_M_contig9483.20465.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9483 1888..2259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9483.20465.1

>prot_S-firma_M_contig9483.20465.1 ID=prot_S-firma_M_contig9483.20465.1|Name=mRNA_S-firma_M_contig9483.20465.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=124bp
EVVARGAELFCGCFPKYYIFELFPSNAANCKTRPPIIRCWEGGITADECA
SHPSLVNAQVRCGWAATCESGPSAQRHSRQNSQTDTSDPRTNHRRLTNHN
PYLPKAVARAAGGVGISFYLTLGK
back to top

mRNA from alignment at S-firma_M_contig9483:1888..2260+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9483.20465.1 ID=mRNA_S-firma_M_contig9483.20465.1|Name=mRNA_S-firma_M_contig9483.20465.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=373bp|location=Sequence derived from alignment at S-firma_M_contig9483:1888..2260+ (Sphaerotrichia firma Sfir_13m male)
GAGGTGGTGGCGCGCGGTGCCGAGTTGTTTTGTGGTTGTTTTCCAAAATA
CTACATCTTCGAGCTCTTTCCCTCGAACGCCGCAAACTGCAAAACAAGGC
CCCCTATCATTCGATGCTGGGAAGGTGGAATAACAGCTGACGAATGTGCT
TCCCACCCTTCCCTGGTGAACGCACAAGTCCGCTGCGGCTGGGCGGCTAC
ATGTGAATCTGGGCCGTCAGCCCAACGGCATTCTCGCCAAAACAGCCAAA
CAGACACATCCGATCCCAGAACGAACCACAGGCGTTTAACCAACCACAAC
CCCTACCTCCCTAAGGCCGTTGCTAGGGCGGCGGGGGGGGTTGGTATCTC
TTTCTATCTCACCTTGGGAAAGC
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig9483:1888..2260+

>mRNA_S-firma_M_contig9483.20465.1 ID=mRNA_S-firma_M_contig9483.20465.1|Name=mRNA_S-firma_M_contig9483.20465.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=744bp|location=Sequence derived from alignment at S-firma_M_contig9483:1888..2260+ (Sphaerotrichia firma Sfir_13m male)
GAGGTGGTGGCGCGCGGTGCCGAGTTGTTTTGTGGTTGTTTTCCAAAATA
CTACATCTTCGAGCTCTTTCCCTCGAACGCCGCAAACTGCAAAACAAGGC
CCCCTATCATTCGATGCTGGGAAGGTGGAATAACAGCTGACGAATGTGCT
TCCCACCCTTCCCTGGTGAACGCACAAGTCCGCTGCGGCTGGGCGGCTAC
ATGTGAATCTGGGCCGTCAGCCCAACGGCATTCTCGCCAAAACAGCCAAA
CAGACACATCCGATCCCAGAACGAACCACAGGCGTTTAACCAACCACAAC
CCCTACCTCCCTAAGGCCGTTGCTAGGGCGGCGGGGGGGGTTGGTATCTC
TTTCTATCTCACCTTGGGAAAGGAGGTGGTGGCGCGCGGTGCCGAGTTGT
TTTGTGGTTGTTTTCCAAAATACTACATCTTCGAGCTCTTTCCCTCGAAC
GCCGCAAACTGCAAAACAAGGCCCCCTATCATTCGATGCTGGGAAGGTGG
AATAACAGCTGACGAATGTGCTTCCCACCCTTCCCTGGTGAACGCACAAG
TCCGCTGCGGCTGGGCGGCTACATGTGAATCTGGGCCGTCAGCCCAACGG
CATTCTCGCCAAAACAGCCAAACAGACACATCCGATCCCAGAACGAACCA
CAGGCGTTTAACCAACCACAACCCCTACCTCCCTAAGGCCGTTGCTAGGG
CGGCGGGGGGGGTTGGTATCTCTTTCTATCTCACCTTGGGAAAG
back to top