mRNA_S-firma_M_contig948.20458.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig948.20458.1
Unique NamemRNA_S-firma_M_contig948.20458.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig948.20458.1 vs. uniprot
Match: D7G6J8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J8_ECTSI)

HSP 1 Score: 268 bits (685), Expect = 3.990e-78
Identity = 211/575 (36.70%), Postives = 296/575 (51.48%), Query Frame = 3
Query:   15 RPTPDEIAQRGQLRGLGEELMRMEAENQRTRRPDGTIPFELPMAFRKTLKAFVQTAAPDLLRELTPF--PFGDANLLEAHGEQLLELLINNAPDAVWMEWLYMSLEVTARADNIDVFHRLFALCKNDPDFWVVESRSALLLGDAARYG-SAEVLSALLEVD--------FLR-------------------------SSLQEVDRTGRPSA--LSNAAGKGCRRCVALLIKAGAPVEGTWAMARSALWVAVAEGHED---VVLDLLDAGADVNKIFGDHGDIT-------PLSTAVSRNNESMVGVLVAAGADFGKNRMHMPPVLLAARRGSCGLLERMLAAGADANIVNSRGQTALHIASEWSRESAVELLLRHNANPTLRCDEGLSPYDLVATS---RR--------RRFPCTLKDAQTAAADRIRGMLRRASAWDRRGWLVMMRSR----RLVAVPLIDDPSVENSSPAEEVSPGNSDETAETIGGRVC-VAVEG-LTLADVPPTNTSGGPNDQEQ------HVVSTKALISGGGQESGKQAGCGGGWECAVEWLMRCPDERGVFREIMGFV 1526
            +PTP+ + ++GQ RGL +EL R++ +N+      G   ++   A    L  F++    +   EL     P+ DA LLE HG  + +L +  A + +W +W+++ LEV+A   +   F RLF LC  +   W  +     LL      G + EVLS LLE+D        F+R                         S +QEVD  G  S   LS AA  G R  VA LIKAGAP+E      R  L  AVA   ++   +V DLL  GADVN +   H D T       PL  A ++N E M+ +L+AAGAD G  R+ + P+  AA   SCG L+R+++AGA  + ++SRG++ALH+A   + E AV+LLL++NA  TL CD GLSP+D+VA +   RR        RR P TL   +T+ ADRI  MLRRASAW+RRGWLV+MR R     L A      PS   S   ++ +  +  ET E      C ++V G + LA   P  T+  P++  +        + T A+ S      GK   C     CAVEWL++CPDE G+FRE + F+
Sbjct:   15 KPTPEMVVRKGQPRGLWKELARIDGDNR------GRDFWDSREAGLGMLLRFIEPLIMETGGELNAVLEPYDDATLLEQHGADVFDLFVRLASEELWGQWIFLLLEVSASGRSAIAFQRLFPLCPEE--IWSDQHNIINLLRRVVIVGHNTEVLSTLLEIDGALPLPSGFVRDLVEGAVRGGSXXXXXXXXXXXSVLSQVQEVDDAGYSSLPILSIAAFLGGRSMVAALIKAGAPLEFQSRRGRPPLATAVASDRDEALGIVRDLLAVGADVNNVG--HNDQTKGPFGNSPLCLAAAKNKEGMMDLLLAAGADLGNERVDILPLHAAAHHHSCGALQRLISAGASVHQLDSRGRSALHVACLHNCEGAVKLLLQYNARVTLLCDGGLSPFDVVAMAVLNRRQLNRCWGLRRRPSTLNSNETSVADRILEMLRRASAWERRGWLVLMRHRIAHDPLAAGSSSRPPSFVESEFGDQTATPHDSETKEDANDGGCELSVHGDIDLAGASPRGTA--PSEAIEGRSGHAFTLETPAVDSSSPNGGGKVQVCES-LRCAVEWLVQCPDEVGIFRETLAFL 576          
BLAST of mRNA_S-firma_M_contig948.20458.1 vs. uniprot
Match: D7FKD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD8_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 5.220e-35
Identity = 132/410 (32.20%), Postives = 184/410 (44.88%), Query Frame = 3
Query:  423 LLLGDAARYGSAEVLSALLEVDFLRSSLQEVDRTG-RP-SALSNAAGKGCRRCVALLIKAGAPVEGTWAM------ARSALWVAVAEGHEDVVLDLLDAGADVNKIFGDHGDITPLSTAVSRNNESMVGVLVAAGADFGKNRMHMPPVLLAARRGSCGLLERMLAAGADANIVNSRGQTALHIASEWSRESAVELLLRHNANPTLRCDEGLSPYDLVA--------------TSRRRRFPCTLKDAQTAAADRIRGMLRRASAWDRRGWLVMMRSRRL-------VAVPLIDDPSVENSSPAEEVSPG------NSDETAETIGGRVCVAVEGLTLADVPPTNTSGGPNDQEQHVVSTKALISGGGQESGKQAGCGG-------GWECAVEWLMRCPDERGVFREIMGFV 1526
            LLL + A+ GS ++L ALLEVD   + L+E D +  RP SAL  AA +G    VA LI+AGAP+E  W                                                                    D GK+R    P+ + A+ G C  LER+L AGA  + V+  G++ALH+A  ++ E AVE LL+H+A+ +L CDEGLSP+D+VA              TS  RR P TL   +T  ADRI  +L+R+S+W RRGWLVMMR+RRL        ++ L+   +  +      +  G      + D +  T G +V  A +     + PP                      G G+E  K AG G         W+ AV WL++CPDE GVF E++ F+
Sbjct:  277 LLLTETAKGGSVDILLALLEVDGFDAELREHDASDHRPFSALYAAAMRGHPSFVAALIEAGAPLEYKWRTQGVIGDTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLGKDRGDCLPLHVTAKEGFCRPLERLLLAGAKVDCVDRVGRSALHVACVYNHEGAVETLLQHHASTSLLCDEGLSPWDVVAADALERRQRKSMSFTSNLRR-PSTLNTVETEVADRIYSILQRSSSWGRRGWLVMMRARRLGPEQVLGTSMSLLPSTTTSHEGQGASLHDGWEAENIDRDCSPPTTGWKVNAAAD---KRETPP---------------------GGHGEEHRKSAGPGRMTEARECAWKGAVVWLLQCPDECGVFHEVLSFL 661          
BLAST of mRNA_S-firma_M_contig948.20458.1 vs. uniprot
Match: D7FVJ3_ECTSI (Ankyrin repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ3_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 2.570e-32
Identity = 131/395 (33.16%), Postives = 174/395 (44.05%), Query Frame = 3
Query:  426 LLGDAARYGSAEVLSALLEVDFLRSSLQEVDRT-GRP-SALSNAAGKGCRRCVALLIKAGAPVEGTWAM----ARSALWVAVAEGHEDVVLDLLDAGADVNKIFGDHGDITPLSTAVSRNNESMVGVLVAAGADF--GKNRMHMPPVLLAARRGSCGLLERMLAAGADANIVNSRGQTALHIASEWSRESAVELLLRHNANPTLRCDEGLSPYDLVA-----TSRRR------------------RFPCTLKDAQTAAADRIRGMLRRASAWDRRGWLVMMRSRRLVAVPLIDDPSVENSSPAEEVSPGNSDETAETIGGRVCVAVEGLTLADVPPTNTSGGPNDQEQHVVSTKALISGGGQESGKQAG---CGGGWECAVEWLMRCPDERGVFR 1508
            LL  AA  GS ++L ALLEV  L   ++EV     RP SAL  AA  G R CV  LI+AGA +E    M     ++AL                                                           GK+R   PP+ +AA++G C  LER+L AGA  + V+  G++ALH+A  ++RE AVE+LLRH+A+ +L CDEG SP+D+VA     T + R                  R PCTL   +T+ ADRI GMLR AS W RRGWLVMMR+R L A  ++       S        G ++   +           GL   D       GG   +++   +    +  G    G QA    C G    AV WL+  PD+ GVFR
Sbjct:   27 LLVSAAVGGSLDILLALLEVGGLLPIVREVGGPHSRPFSALYIAAANGRRSCVKALIEAGAALEYKCLMQGHLGKTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKDREECPPLHVAAKKGFCRPLERLLLAGAKVDCVDRVGRSALHVACFYNREGAVEVLLRHHASTSLLCDEGRSPFDMVAVDALETRQGRAMXXXXXXXXXXXXXGTSRTPCTLNAVETSVADRICGMLRNASKWGRRGWLVMMRARHLDATQVLGTSMSLLSLSTRRWKDGKNESLHD-----------GLATEDTDHDCALGGQCSEQRVPTAPDNPVQAGDAIDGGQARDIRCRG----AVVWLLHRPDQSGVFR 406          
BLAST of mRNA_S-firma_M_contig948.20458.1 vs. uniprot
Match: A0A6H5JHC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC8_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 6.900e-16
Identity = 83/254 (32.68%), Postives = 118/254 (46.46%), Query Frame = 3
Query:  816 KNRMHMPPVLLAARRGSCGLLERMLAAGADANIVNSRGQTALHIASEWSRESAVELLLRHNANPTLRCDEGLSPYDLVATSRRRRFPCTLKDAQTAAADRIRGMLRRAS----AWDRRGWLVMMRSR---RLVAVPLIDDPS--VENSSPAEEVSPGNSDETAETIGGRVCVAVEGLTLADVPPTNTSGGPNDQEQHVVSTKALI--------SGGGQESGKQAGCGGGWECAVEWLMRCPDERGVFREIMGFV 1526
            +N    P  +LAA+   CG  + +++AGA  + ++S G+ ALH+    + E AV+LLLR+NA  TL CDEGLSP+D+V                      I  + RR S       RRGWLV+MR R    LVA      P   VE++   +  +P  + E A   GG        +  A   P  T+  P++  +   S  +L         +GGG+        G     AVEWL++CPDE GVF E   F+
Sbjct:  142 RNGWTRPRSMLAAQCDCCGAKQGLISAGASVHQLDSGGRAALHMTCLHNCEGAVKLLLRYNACMTLLCDEGLSPFDVVI---------------------IAVLNRRESNGFYPQGRRGWLVLMRHRFAHDLVATASSSPPRSCVESAFSGKTATPSKTKEDAND-GGCELPGDGDINSAGASPKGTA--PSEAFEGRTSQHSLCKCQWWSVPNGGGKVQVCHVLRG-----AVEWLVQCPDEVGVFSETSAFL 366          
BLAST of mRNA_S-firma_M_contig948.20458.1 vs. uniprot
Match: A0A7Z6TNS3_9ACTN (Uncharacterized protein n=6 Tax=Streptomyces TaxID=1883 RepID=A0A7Z6TNS3_9ACTN)

HSP 1 Score: 74.7 bits (182), Expect = 5.970e-12
Identity = 49/129 (37.98%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  630 RSALWVAVAEGHEDVVLDLLDAGADVNKIFGDHGDITPLSTAVSRNNESMVGVLVAAGADFGKNRMHMP--PVLLAARRGSCGLLERMLAAGADANIVNSRGQTALHIASEWSRESAVELLLRHNANPT 1010
            RSAL +AV EGH DVV  LL AGA+     G + ++TP++ A      ++V  L+ AG   G  R  +P  P++LAA  G   +++ +L  GAD    + +G++ L  A  + + +AV LLLR  A PT
Sbjct:    6 RSALDLAVQEGHADVVRLLLAAGAEPEGRAGPYHELTPMTEAAMFGRAAVVEALIDAGVSTGAQRDRIPYVPLVLAATLGHTDVVDVLLDRGADIEDRDFKGRSPLEWAVSFGQPAAVRLLLRRGAEPT 134          
BLAST of mRNA_S-firma_M_contig948.20458.1 vs. uniprot
Match: A0A672ZY84_9TELE (CARD- and ANK-containing Inflammasome Adaptor Protein n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A672ZY84_9TELE)

HSP 1 Score: 74.3 bits (181), Expect = 2.350e-10
Identity = 53/162 (32.72%), Postives = 90/162 (55.56%), Query Frame = 3
Query:  582 LLIKAGAPVEGTWAMARSALWVAVAEGHEDVVLDLLDAGADVNKIFGDHGDITPLSTAVSRNNESMVGVLVAAGADFGK-NRMHMPPVLLAARRGSC-GLLERMLAAGADANIVNSRGQTALHIASEWSRESAVELLLRHNANPTLRCDEGLSPYDLVATSR 1061
            LL+++GA V+      ++AL+ AVA GH+  +  LL+AGA V++      D+  ++ A+  N ES++ +L+  GA+    ++    PVLL+A  G C  ++E++L  G D NI+ S+ QT LH+A+ ++R   V LL            +G +P  L   +R
Sbjct:  140 LLLQSGAAVDAQNDQNKTALFYAVAGGHDKTLTVLLNAGAKVDR------DV--MNEAIKLNQESVLKLLLGDGANVNICDKQGYTPVLLSAELGGCVPIVEKLLEKGLDPNIIGSKAQTPLHLAAVFNRSDLVGLLRVSFLQVNAVNQDGATPLHLATAAR 293          
BLAST of mRNA_S-firma_M_contig948.20458.1 vs. uniprot
Match: A0A8D8WPK3_9HEMI (Asparaginase n=4 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8WPK3_9HEMI)

HSP 1 Score: 71.2 bits (173), Expect = 3.250e-9
Identity = 60/175 (34.29%), Postives = 90/175 (51.43%), Query Frame = 3
Query:  531 PSALSNAAGKGCRRCVALLIKAGAPVEGTWAMARSALWVAVAEGHEDVVLDLLDAGADVNKIFGDHGDITPLSTAVSRNNESMVGVLVAAGADFGKNRMHMPPVLL-AARRGSCGLLERMLAAGADANIVNSRGQTALHIASEWSRESAVELLLRH-NANPTLRCDEGLSPYDLV 1049
            P+ L  A  KG  + V  +   GA +    A  RSA+ +A  EGH D+V  LL  GA V++   D   +TPL  A++ ++  ++ +L++ GA   K+   +  +L  AA RG    LE    AGAD N+ NS G TALH A   S+   V+ L+ + N N  ++   G +  DL 
Sbjct:  432 PAMLQAAVMKGDLKRVEEIKGYGADLSMKDADNRSAIHIACCEGHFDIVKYLLLNGASVHE--KDRHGVTPLDEAITADDHDIIKLLISTGAHLTKDSTLLGDLLTSAAGRGLIKRLESFTLAGADLNLPNSIGMTALHAALLNSQNEVVQYLISNKNVNVNVKDRLGRTAMDLA 604          
BLAST of mRNA_S-firma_M_contig948.20458.1 vs. uniprot
Match: A0A4S3GJR2_9ACTN (Ankyrin repeat domain-containing protein n=5 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A4S3GJR2_9ACTN)

HSP 1 Score: 65.1 bits (157), Expect = 2.540e-8
Identity = 48/130 (36.92%), Postives = 70/130 (53.85%), Query Frame = 3
Query:  576 VALLIKAGAPVEGTWAMARSALWVAVAEGHEDVVLDLLDAGADVNKIFGDHGDITPLSTAVSRNNESMVGVLVAAGADFGKNRMHMP--PVLLAARRGSCGLLERMLAAGADANIVNSRGQTALHIASEW 959
            VA L+ +G  V+      RSAL +AV EGH DVV  LL AGAD     G + ++TP++ A      ++V  L+ AG   G  R+  P  P++LAA  G   ++E +L  GAD    + +G++ L    EW
Sbjct:   23 VARLLASGVGVDAIDREGRSALDLAVQEGHADVVRLLLAAGADPEGRAGPYHELTPMTEAAMFGRAAVVEALIDAGVSTGAQRVRSPHVPLVLAATCGHPDVVELLLDRGADIEDRDFKGRSPL----EW 148          
BLAST of mRNA_S-firma_M_contig948.20458.1 vs. uniprot
Match: A0A087Y9M5_POEFO (Ankyrin repeat, SAM and basic leucine zipper domain containing 1 n=10 Tax=Poeciliinae TaxID=586240 RepID=A0A087Y9M5_POEFO)

HSP 1 Score: 67.0 bits (162), Expect = 5.320e-8
Identity = 57/185 (30.81%), Postives = 88/185 (47.57%), Query Frame = 3
Query:  510 EVDRTGRPSALSNAAGKGCRRCVALLIKAGAPVEGTWAMARSALWVAVAEGHEDVVLDLLDAGADVNKIFGDHGDITPLSTAVSRNNESM---VGVLVAAGAD--FGKNRMHMPPVLLAARRGSCGLLERMLAAGADANIVNSRGQTALHIASEWSRESAVELLLRHNANPTLRCDEGLSPYDLV 1049
            EV      S L  A  +G    V  L+  G  VE       + L  AV+  + ++   LLD GA  N    D   +   S   S + + +   V +L++  AD      R  M  ++LAAR G C ++  +++ GA+ N+ +S+G TAL  A ++ +E AV  LL+  A+ T+R   G SP DL 
Sbjct:   42 EVGSGDNISVLKKAISEGDTDTVKQLLDNGLDVETRLGFGWTPLMYAVSVANCNLARLLLDRGASANFSKADCWTVLMASCTASSSEDKIGHCVELLLSRSADPNMVDRRSQMTCLMLAARDGLCKVINLLVSHGAEINVQDSKGYTALSTAVQYGKEQAVLKLLQLGADKTIRTKTGKSPADLA 226          
BLAST of mRNA_S-firma_M_contig948.20458.1 vs. uniprot
Match: UPI00167F1C4D (ankyrin repeat domain-containing protein n=1 Tax=Streptomyces malachitofuscus TaxID=67322 RepID=UPI00167F1C4D)

HSP 1 Score: 62.8 bits (151), Expect = 1.510e-7
Identity = 52/165 (31.52%), Postives = 75/165 (45.45%), Query Frame = 3
Query:  522 TGRPSALSNAAGKGCRRCVALLIKAGAPVEGTWAMARSALWVAVAEGHEDVVLDLLDAGADVNKIFGDHGDITPLSTAVSRNNESMVGVLVAAGADFGK--NRMHMPPVLLAARRGSCGLLERMLAAGADANIVNSRGQTALHIASEWSRESAVELLLRHNANPT 1010
            T R   L  AA       V  L+++G  V+      R+AL +AV EGH ++V  LLDA AD     G + D+TP++ A      ++V VL+ AG       NR+   P++LA               GAD    + +G + L     + R + V LLL   A PT
Sbjct:    5 TERSDELPRAAKDNDTALVRRLLESGVGVDAIDREGRTALDLAVQEGHAEMVRLLLDANADTEGNAGPYHDLTPMTEAAMFGRRAVVEVLIDAGVSLRAPANRIPYVPLVLAXXXXXXXXXXXXXXXGADIEDRDFKGWSPLEWTVSFGRVAMVRLLLGRGAEPT 169          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig948.20458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6J8_ECTSI3.990e-7836.70Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FKD8_ECTSI5.220e-3532.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVJ3_ECTSI2.570e-3233.16Ankyrin repeat-containing protein, putative n=1 Ta... [more]
A0A6H5JHC8_9PHAE6.900e-1632.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7Z6TNS3_9ACTN5.970e-1237.98Uncharacterized protein n=6 Tax=Streptomyces TaxID... [more]
A0A672ZY84_9TELE2.350e-1032.72CARD- and ANK-containing Inflammasome Adaptor Prot... [more]
A0A8D8WPK3_9HEMI3.250e-934.29Asparaginase n=4 Tax=Cacopsylla melanoneura TaxID=... [more]
A0A4S3GJR2_9ACTN2.540e-836.92Ankyrin repeat domain-containing protein n=5 Tax=u... [more]
A0A087Y9M5_POEFO5.320e-830.81Ankyrin repeat, SAM and basic leucine zipper domai... [more]
UPI00167F1C4D1.510e-731.52ankyrin repeat domain-containing protein n=1 Tax=S... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig948contigS-firma_M_contig948:3558..5445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score263.1
Seed ortholog evalue2.6e-67
Seed eggNOG ortholog2880.D7G6J8
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1888
Cds size1455
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig948.20458.1prot_S-firma_M_contig948.20458.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig948 3632..5086 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828781.105749-UTR-S-firma_M_contig948:3557..36311622828781.105749-UTR-S-firma_M_contig948:3557..3631Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig948 3558..3631 +
1697105158.661861-UTR-S-firma_M_contig948:3557..36311697105158.661861-UTR-S-firma_M_contig948:3557..3631Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig948 3558..3631 +
1622828781.130056-UTR-S-firma_M_contig948:5086..54451622828781.130056-UTR-S-firma_M_contig948:5086..5445Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig948 5087..5445 +
1697105158.688142-UTR-S-firma_M_contig948:5086..54451697105158.688142-UTR-S-firma_M_contig948:5086..5445Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig948 5087..5445 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828781.117639-CDS-S-firma_M_contig948:3631..50861622828781.117639-CDS-S-firma_M_contig948:3631..5086Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig948 3632..5086 +
1697105158.6764884-CDS-S-firma_M_contig948:3631..50861697105158.6764884-CDS-S-firma_M_contig948:3631..5086Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig948 3632..5086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig948.20458.1

>prot_S-firma_M_contig948.20458.1 ID=prot_S-firma_M_contig948.20458.1|Name=mRNA_S-firma_M_contig948.20458.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=485bp
MRMEAENQRTRRPDGTIPFELPMAFRKTLKAFVQTAAPDLLRELTPFPFG
DANLLEAHGEQLLELLINNAPDAVWMEWLYMSLEVTARADNIDVFHRLFA
LCKNDPDFWVVESRSALLLGDAARYGSAEVLSALLEVDFLRSSLQEVDRT
GRPSALSNAAGKGCRRCVALLIKAGAPVEGTWAMARSALWVAVAEGHEDV
VLDLLDAGADVNKIFGDHGDITPLSTAVSRNNESMVGVLVAAGADFGKNR
MHMPPVLLAARRGSCGLLERMLAAGADANIVNSRGQTALHIASEWSRESA
VELLLRHNANPTLRCDEGLSPYDLVATSRRRRFPCTLKDAQTAAADRIRG
MLRRASAWDRRGWLVMMRSRRLVAVPLIDDPSVENSSPAEEVSPGNSDET
AETIGGRVCVAVEGLTLADVPPTNTSGGPNDQEQHVVSTKALISGGGQES
GKQAGCGGGWECAVEWLMRCPDERGVFREIMGFV*
back to top

mRNA from alignment at S-firma_M_contig948:3558..5445+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig948.20458.1 ID=mRNA_S-firma_M_contig948.20458.1|Name=mRNA_S-firma_M_contig948.20458.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1888bp|location=Sequence derived from alignment at S-firma_M_contig948:3558..5445+ (Sphaerotrichia firma Sfir_13m male)
AGGGGGCTTCGGCACGGCCGACGCCTGACGAAATCGCTCAAAGGGGTCAG CTTCGAGGCCTTGGCGAAGAGCTTATGCGCATGGAGGCCGAAAACCAACG AACTCGACGCCCGGACGGAACAATCCCTTTTGAGCTTCCCATGGCTTTCC GGAAGACACTTAAAGCGTTCGTTCAAACGGCAGCACCTGATCTGTTGCGC GAGCTCACCCCATTTCCATTCGGTGACGCGAATCTACTCGAAGCCCACGG TGAGCAGCTCCTGGAGCTGCTAATCAACAACGCCCCGGACGCGGTGTGGA TGGAATGGCTATACATGTCGTTGGAGGTGACCGCACGTGCCGACAACATC GACGTGTTCCACAGGCTCTTTGCCCTCTGCAAGAACGATCCAGATTTTTG GGTGGTTGAAAGTAGATCTGCCTTACTCCTGGGAGACGCCGCACGTTACG GAAGTGCTGAAGTTCTGTCGGCTCTCCTGGAGGTTGATTTCCTTCGCTCG TCACTACAGGAAGTCGACAGGACGGGCAGACCCTCCGCTCTGTCAAATGC CGCCGGCAAAGGATGCCGAAGATGCGTGGCGCTTCTCATCAAGGCTGGGG CGCCCGTGGAAGGCACGTGGGCGATGGCCAGGTCGGCTCTTTGGGTGGCG GTTGCTGAAGGCCACGAAGATGTAGTCCTGGATCTTCTGGACGCCGGAGC TGATGTAAACAAAATCTTTGGTGATCATGGGGATATTACCCCGCTCAGCA CCGCTGTATCTAGAAACAACGAGAGCATGGTGGGTGTTCTCGTGGCAGCC GGGGCGGACTTTGGCAAGAACCGGATGCACATGCCGCCGGTTCTTCTCGC TGCACGGAGAGGGAGCTGCGGGTTGCTGGAGCGAATGCTTGCAGCCGGAG CAGACGCAAACATTGTCAATTCCAGGGGCCAAACGGCCTTGCACATTGCT TCTGAATGGAGTCGTGAAAGCGCCGTCGAGCTTCTGTTGCGGCACAACGC CAACCCTACCTTGCGTTGCGATGAAGGCCTCTCTCCATATGATCTGGTGG CGACCTCTAGGCGCAGGCGCTTTCCTTGTACGCTGAAAGATGCTCAGACC GCTGCCGCTGATCGCATTCGCGGCATGTTGCGAAGAGCTAGCGCGTGGGA TCGTCGGGGATGGCTGGTCATGATGCGGTCTCGACGCCTTGTGGCTGTGC CGCTCATCGACGATCCATCTGTAGAGAATTCATCACCGGCCGAAGAGGTT TCACCCGGAAACAGCGATGAGACAGCGGAGACCATAGGTGGCAGGGTTTG CGTGGCAGTGGAAGGGTTGACCCTGGCGGATGTGCCGCCAACGAACACGT CAGGAGGGCCGAATGATCAAGAGCAGCATGTGGTCTCCACGAAAGCACTG ATTTCGGGCGGAGGCCAGGAAAGCGGAAAGCAGGCTGGGTGTGGCGGCGG TTGGGAGTGTGCGGTTGAGTGGCTCATGCGGTGTCCCGACGAGCGTGGTG TATTCCGGGAGATCATGGGCTTTGTCTGAAGGCATTGACTGGCGATGCAT GTGTTCAAAGCGGAGGGTGGTGGCTTCGAGGATCGTTTTTGGGAGTTAGG TATTCCCTGGCCTGCGAAAAGTGTAGAATCGGAATTGATATTTAGTGAGG ACTACAGCCTACCCTTCTACTGGACAGGAGATCCATAAGATCGGTATTTT TTAAATGTACTGCTCGTCTCCATGCGTGCAGAGATGGACGGCAGGTCGAA CTAGACTAAACTCGATGCATCTGCACCATGTTGTGCACAAGGTTATTTTG AATTTTGGGGGCGTATCCTCTCGCTCACCCGAACTTTGAGAGATAGGGGT TTGGAGTTCTTGACGCTACCCTCACCTCTGTGTCCGGC
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig948:3558..5445+

>mRNA_S-firma_M_contig948.20458.1 ID=mRNA_S-firma_M_contig948.20458.1|Name=mRNA_S-firma_M_contig948.20458.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=2910bp|location=Sequence derived from alignment at S-firma_M_contig948:3558..5445+ (Sphaerotrichia firma Sfir_13m male)
ATGCGCATGGAGGCCGAAAACCAACGAACTCGACGCCCGGACGGAACAAT
CCCTTTTGAGCTTCCCATGGCTTTCCGGAAGACACTTAAAGCGTTCGTTC
AAACGGCAGCACCTGATCTGTTGCGCGAGCTCACCCCATTTCCATTCGGT
GACGCGAATCTACTCGAAGCCCACGGTGAGCAGCTCCTGGAGCTGCTAAT
CAACAACGCCCCGGACGCGGTGTGGATGGAATGGCTATACATGTCGTTGG
AGGTGACCGCACGTGCCGACAACATCGACGTGTTCCACAGGCTCTTTGCC
CTCTGCAAGAACGATCCAGATTTTTGGGTGGTTGAAAGTAGATCTGCCTT
ACTCCTGGGAGACGCCGCACGTTACGGAAGTGCTGAAGTTCTGTCGGCTC
TCCTGGAGGTTGATTTCCTTCGCTCGTCACTACAGGAAGTCGACAGGACG
GGCAGACCCTCCGCTCTGTCAAATGCCGCCGGCAAAGGATGCCGAAGATG
CGTGGCGCTTCTCATCAAGGCTGGGGCGCCCGTGGAAGGCACGTGGGCGA
TGGCCAGGTCGGCTCTTTGGGTGGCGGTTGCTGAAGGCCACGAAGATGTA
GTCCTGGATCTTCTGGACGCCGGAGCTGATGTAAACAAAATCTTTGGTGA
TCATGGGGATATTACCCCGCTCAGCACCGCTGTATCTAGAAACAACGAGA
GCATGGTGGGTGTTCTCGTGGCAGCCGGGGCGGACTTTGGCAAGAACCGG
ATGCACATGCCGCCGGTTCTTCTCGCTGCACGGAGAGGGAGCTGCGGGTT
GCTGGAGCGAATGCTTGCAGCCGGAGCAGACGCAAACATTGTCAATTCCA
GGGGCCAAACGGCCTTGCACATTGCTTCTGAATGGAGTCGTGAAAGCGCC
GTCGAGCTTCTGTTGCGGCACAACGCCAACCCTACCTTGCGTTGCGATGA
AGGCCTCTCTCCATATGATCTGGTGGCGACCTCTAGGCGCAGGCGCTTTC
CTTGTACGCTGAAAGATGCTCAGACCGCTGCCGCTGATCGCATTCGCGGC
ATGTTGCGAAGAGCTAGCGCGTGGGATCGTCGGGGATGGCTGGTCATGAT
GCGGTCTCGACGCCTTGTGGCTGTGCCGCTCATCGACGATCCATCTGTAG
AGAATTCATCACCGGCCGAAGAGGTTTCACCCGGAAACAGCGATGAGACA
GCGGAGACCATAGGTGGCAGGGTTTGCGTGGCAGTGGAAGGGTTGACCCT
GGCGGATGTGCCGCCAACGAACACGTCAGGAGGGCCGAATGATCAAGAGC
AGCATGTGGTCTCCACGAAAGCACTGATTTCGGGCGGAGGCCAGGAAAGC
GGAAAGCAGGCTGGGTGTGGCGGCGGTTGGGAGTGTGCGGTTGAGTGGCT
CATGCGGTGTCCCGACGAGCGTGGTGTATTCCGGGAGATCATGGGCTTTG
TCTGAATGCGCATGGAGGCCGAAAACCAACGAACTCGACGCCCGGACGGA
ACAATCCCTTTTGAGCTTCCCATGGCTTTCCGGAAGACACTTAAAGCGTT
CGTTCAAACGGCAGCACCTGATCTGTTGCGCGAGCTCACCCCATTTCCAT
TCGGTGACGCGAATCTACTCGAAGCCCACGGTGAGCAGCTCCTGGAGCTG
CTAATCAACAACGCCCCGGACGCGGTGTGGATGGAATGGCTATACATGTC
GTTGGAGGTGACCGCACGTGCCGACAACATCGACGTGTTCCACAGGCTCT
TTGCCCTCTGCAAGAACGATCCAGATTTTTGGGTGGTTGAAAGTAGATCT
GCCTTACTCCTGGGAGACGCCGCACGTTACGGAAGTGCTGAAGTTCTGTC
GGCTCTCCTGGAGGTTGATTTCCTTCGCTCGTCACTACAGGAAGTCGACA
GGACGGGCAGACCCTCCGCTCTGTCAAATGCCGCCGGCAAAGGATGCCGA
AGATGCGTGGCGCTTCTCATCAAGGCTGGGGCGCCCGTGGAAGGCACGTG
GGCGATGGCCAGGTCGGCTCTTTGGGTGGCGGTTGCTGAAGGCCACGAAG
ATGTAGTCCTGGATCTTCTGGACGCCGGAGCTGATGTAAACAAAATCTTT
GGTGATCATGGGGATATTACCCCGCTCAGCACCGCTGTATCTAGAAACAA
CGAGAGCATGGTGGGTGTTCTCGTGGCAGCCGGGGCGGACTTTGGCAAGA
ACCGGATGCACATGCCGCCGGTTCTTCTCGCTGCACGGAGAGGGAGCTGC
GGGTTGCTGGAGCGAATGCTTGCAGCCGGAGCAGACGCAAACATTGTCAA
TTCCAGGGGCCAAACGGCCTTGCACATTGCTTCTGAATGGAGTCGTGAAA
GCGCCGTCGAGCTTCTGTTGCGGCACAACGCCAACCCTACCTTGCGTTGC
GATGAAGGCCTCTCTCCATATGATCTGGTGGCGACCTCTAGGCGCAGGCG
CTTTCCTTGTACGCTGAAAGATGCTCAGACCGCTGCCGCTGATCGCATTC
GCGGCATGTTGCGAAGAGCTAGCGCGTGGGATCGTCGGGGATGGCTGGTC
ATGATGCGGTCTCGACGCCTTGTGGCTGTGCCGCTCATCGACGATCCATC
TGTAGAGAATTCATCACCGGCCGAAGAGGTTTCACCCGGAAACAGCGATG
AGACAGCGGAGACCATAGGTGGCAGGGTTTGCGTGGCAGTGGAAGGGTTG
ACCCTGGCGGATGTGCCGCCAACGAACACGTCAGGAGGGCCGAATGATCA
AGAGCAGCATGTGGTCTCCACGAAAGCACTGATTTCGGGCGGAGGCCAGG
AAAGCGGAAAGCAGGCTGGGTGTGGCGGCGGTTGGGAGTGTGCGGTTGAG
TGGCTCATGCGGTGTCCCGACGAGCGTGGTGTATTCCGGGAGATCATGGG
CTTTGTCTGA
back to top