mRNA_S-firma_M_contig9478.20456.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9478.20456.1
Unique NamemRNA_S-firma_M_contig9478.20456.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
[Close]
BLAST of mRNA_S-firma_M_contig9478.20456.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 1.570e-42
Identity = 253/415 (60.96%), Postives = 288/415 (69.40%), Query Frame = 3 
Query:  258 DLLSEALTLDEWSEFLTAPLERAAAKGNGGLAQKLRLAGAAVGDALHHAVRGGHAGIVYEVLQGGASAADEDANGDTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLRCRHRQEWVVHLAARKGCVEILRAAMERGADVLAVDQLEYTTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAAARMAGTRGAVQVVDSLLRSGADETLLSEEREVAADVVGVHSDEEEXXXXXXXXXXXXXXDAEDVEPVRKLLVNAPVDRAWRRRGYLVLCRAHPERVKLIQESSRTSAPADLARKTCRGTMMAASGRTRTAGSSTAEDERTSGDWTGLVEMVLGLQEEDIFRTIIGFL 1502
            D + E LT  + +E L A LE AAAKGN  LAQ+L  AGA +GDALH AV GGH  IV ++L+  AS A  D +G TPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  LR    +    H AA +G VEILRA +E GADV AVD  + T  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          A R AG +GA +VV+SLLR+GADET+ + +   A D++G   +EE+                EDVE VR+LL NAP DRAWRRRGYL++CRA P+RV   + +S T       R   R  M  A G    AG ST  DE T G+W  +V  V+ LQEE IFRTI+ +L
Sbjct:    3 DFIFEILTSQQLAELLRALLEHAAAKGNKDLAQRLVRAGAEIGDALHRAVDGGHREIVSDLLESEASLAATDMDGRTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLRSTQFKCPATHAAALEGHVEILRAIIEHGADVDAVDAQQRTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNSLLTPLMKAGRQAGRQGAAEVVNSLLRAGADETIANVQGNKAVDMIGEDVEEEDRL-------------TEDVERVRELLANAPADRAWRRRGYLIMCRAQPDRVPERRMTSGTHYTNVARRTRSRAKMARARG---IAGESTV-DESTGGNWAVVVSKVISLQEEGIFRTIVEYL 400
[Close]
BLAST of mRNA_S-firma_M_contig9478.20456.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 9.740e-24
Identity = 176/438 (40.18%), Postives = 215/438 (49.09%), Query Frame = 3 
Query:  204 VANRERRESLRGVEEEIFDLLSEALTLDEWSEFLTAPLERAAAKGNGGLAQKLRLAGAAVGDALHHAVRGGHAGIVYEVLQGGASAADEDANGDTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLRCRHRQEWVVHLAARKGCVEILRAAMERGADVLA-----VDQLEYTTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAAARMAGTRGAVQVVDSLLRSGADETLLSEEREVAADVVGVHSDEEEXXXXXXXXXXXXXXDAEDVEPVRKLLVNAPVDRAWRRRGYLVLCRAHPERVKLIQESSRTSAPADLARKTCRGTMMAASGRTRTAGSSTAEDERTSGDWTGLVEMVLGLQEEDIFRTIIGFL 1502
            +AN   R +LRG EE IFDL +E  T  +W+  +   LE AA +G+  L +KL  AGA +G A+H AVRGGH  I   +L+ GASA+  D  G TPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  I+ R   R+   + + A +G V+ +R  +E GADV A     V  L + T                                                                      A  AG +G V+VVD LLR GADET ++     AAD +G+   EE+                E+ E VRKLL NAP DRAWRRR  LVLCRA P++++L  +         +AR   R                                 VLGL EE IFRTI+ F+
Sbjct:    1 MANECARGALRGEEERIFDLAAETCTPKQWAGLMQPFLEHAAGRGHEHLTRKLVEAGAEIGTAVHAAVRGGHCDITEFLLESGASASASDEEGLTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADINRRYGDREISALDIGAGEGHVDFIRTLIEHGADVDATNYGGVAALHHATANNKVEAMDVLLRAGANARSMSESGHTVLHMAAITRTRTEAATLAVLLKHGADVNAQTVGGTSVLEY--VATRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGMKVPEEDRIP-------------EEFEGVRKLLANAPADRAWRRRCSLVLCRARPDKMQLSSDR--------IARLEAR---------------------------------VLGLVEEGIFRTIVRFI 382
[Close]
BLAST of mRNA_S-firma_M_contig9478.20456.1 vs. uniprot
Match: D7G137_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G137_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 3.160e-21
Identity = 200/432 (46.30%), Postives = 241/432 (55.79%), Query Frame = 3 
Query:  210 NRERRESLRGVEEEIFDLLSEALTLDEWSEFLTAPLERAAAKGNGGLAQKLRLAGAAVGD-ALHHAVRGGHAGIVYEVLQGGASAADEDANGDTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLRCRHRQEWVVHLAARKGCVEILRAAMERGADVLAVDQLEYTTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAAARMAGTRGAVQVVDSLLRSGADETLLSEEREVAADVVGVHSDEEEXXXXXXXXXXXXXXDAEDVEPVRKLLVNAPVDRAWRRRGYLVLCRAHPERVKLIQESSRTSAPADLARKTCRGTMMAASGRTRTAGSSTAEDERTSGDWTGLVEMVLGLQEEDIFRTIIGFL 1502
            N+  +E+L+G EE + DL+ +     E SE+L APLE A A+G+ GLAQKL  AGA +G  ALH AVR GH  I   +L+ GAS  D++ +  TP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+ +R        +  AA    VEILR  ++ G +V                                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   A++   RG+VQVV  LLR GADET++ ++ + AAD +G                     +  D E  R LL  AP DRAWRRRG LVLC A+P+R++L                                           GD  GLV+ VLGL+E  +FRTI+ +L
Sbjct:   12 NKAAKETLKGEEERVLDLMLDTRCPHEMSEWLAAPLESAVARGDEGLAQKLVQAGAKIGGVALHEAVRRGHIAIAELLLENGASVHDDEDDYGTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTVRLNEFDMSFLDFAASSQDVEILRMLIDHGMEVNLAAAFGTALHWAAKANRANAIDVLVGAGADIQARNMSGSRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKVGQRRGSVQVVGLLLRWGADETIVCKQGKTAADRIGTRR--------------FPSTEPGDDERARSLLTRAPADRAWRRRGLLVLCHAYPDRLQL------------------------------------------GGDLAGLVDRVLGLEEVGVFRTIVLYL 387
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BLAST of mRNA_S-firma_M_contig9478.20456.1 vs. uniprot
Match: D7G1U1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 4.870e-20
Identity = 232/433 (53.58%), Postives = 272/433 (62.82%), Query Frame = 3 
Query:  210 NRERRESLRGVEEEIFDLLSEALTLDEWSEFLTAPLERAAAKGNGGLAQKLRLAGAAVGD-ALHHAVRGGHAGIVYEVLQGGASAADEDANGDTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLRCRHRQEWVVHLAARKGCVEILRAAMERGADVLAVDQLEYTTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAAARMAGTR-GAVQVVDSLLRSGADETLLSEEREVAADVVGVHSDEEEXXXXXXXXXXXXXXDAEDVEPVRKLLVNAPVDRAWRRRGYLVLCRAHPERVKLIQESSRTSAPADLARKTCRGTMMAASGRTRTAGSSTAEDERTSGDWTGLVEMVLGLQEEDIFRTIIGFL 1502
            N+  +E+++G  + + DL+ +     E SE+L APLE A   G+ GLA+KL  AGA VG  ALH  VR GH  +   +L+ GAS  D++ +  TP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+ +R    +   +  AA    VEI+R  ++ G +V   +    T LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       G R G+ QVVD LLR GADET++S++ E AAD +G                     D ED E  R LL  AP DRAWRRRG LVLCRAHP+R++L                                           GD  GLV  V GL+E  +FRTI+ +L
Sbjct:   15 NKAAKETMKGEGQRVLDLMFDTRWPHEMSEWLAAPLESAVVSGHEGLARKLVQAGAKVGGVALHETVRRGHIAMAELLLENGASVHDDEDDYGTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTVRLTEFEVSALDFAALSDHVEIVRMLIDHGMEVHRANSDGRTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVGQRHGSAQVVDLLLRWGADETIVSKQGETAADSIGTRR--------------CHRTDPEDDERARSLLARAPADRAWRRRGLLVLCRAHPDRLQL------------------------------------------GGDLAGLVAGVGGLEEVGVFRTIVLYL 391
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BLAST of mRNA_S-firma_M_contig9478.20456.1 vs. uniprot
Match: D7G981_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G981_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.040e-16
Identity = 67/164 (40.85%), Postives = 86/164 (52.44%), Query Frame = 3 
Query: 1011 AGTRGAVQVVDSLLRSGADETLLSEEREVAADVVGVHSDEEEXXXXXXXXXXXXXXDAEDVEPVRKLLVNAPVDRAWRRRGYLVLCRAHPERVKLIQESSRTSAPADLARKTCRGTMMAASGRTRTAGSSTAEDERTSGDWTGLVEMVLGLQEEDIFRTIIGFL 1502
            AG  GAV+VVD LLR  ADET          ++VG  + E +                 +V+ V KLL  AP DRAWRRRG LVLCRAHPER+ L Q +S       L     R  ++        +G   A D RT+ +W+ +V  VLGL +E IFRTI+G+L
Sbjct:  250 AGDEGAVEVVDLLLRWNADETDDDAYGHTPGNIVGCMTPETDSMFV-------------NVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESTVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGL-DEGIFRTIVGYL 399
[Close]
BLAST of mRNA_S-firma_M_contig9478.20456.1 vs. uniprot
Match: A0A6H5JES7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES7_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.390e-15
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = -2 
Query: 1584 VASASAHKNEMGIAADTDG-HRDPCI*IFVPNAPVPTQLHHYARLAAGAQQQEGIGP 1751
            + SASAHK+EMGIAA T+G         FVP+APVPTQLHHYARLAAGA QQEGIGP
Sbjct:    1 MTSASAHKDEMGIAAYTNGLEARASAPFFVPDAPVPTQLHHYARLAAGAPQQEGIGP 57
[Close]
BLAST of mRNA_S-firma_M_contig9478.20456.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 7.400e-15
Identity = 71/181 (39.23%), Postives = 92/181 (50.83%), Query Frame = 3 
Query:  993 HAAARMAGTRGAVQVVDSLLRSGADETLLSEEREVAADVVGVHSDEEEXXXXXXXXXXXXXXDAEDVEPVRKLLVNAPVDRAWRRRGYLVLCRAHPERVKLIQESSRTS-APADLARKTCRGTMMAASGRTRTAGSSTAEDERTSGDWTGLVEMVLGLQEEDI----------FRTIIGFL 1502
            H  A  AG+ G  ++VD LLR GADET +SE    AAD+V + ++E +               AEDV+ VRKLL  AP DRAWRRRG+L+L RAH    + +Q   RTS APA    K           RTR    S+ E  R   DW G+V M++G   + I          F  I+G+L
Sbjct:  627 HLVAAKAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVVLKTEESDSL-------------AEDVDRVRKLLARAPADRAWRRRGFLILSRAHYPGGR-VQFGHRTSQAPAAGVAK-----------RTR----SSEEPSRAEIDWAGVVSMLMGDGVDPISLMGDGANLIFEKIVGYL 778
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BLAST of mRNA_S-firma_M_contig9478.20456.1 vs. uniprot
Match: A0A6H5L0B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.340e-14
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = -2 
Query: 1584 VASASAHKNEMGIAADTDGHRDPCI*IFVPNAPVPTQLHHYARLAAGAQQQEGIGP 1751
            + SAS+HK+E+GIAA  DG   P +   V  APVPTQLHHYARLAAGA QQEG GP
Sbjct:    1 MTSASSHKDEVGIAAYIDGRGGPRMCTIVSGAPVPTQLHHYARLAAGAPQQEGAGP 56
[Close]
BLAST of mRNA_S-firma_M_contig9478.20456.1 vs. uniprot
Match: A0A6H5KB47_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB47_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.030e-13
Identity = 41/61 (67.21%), Postives = 44/61 (72.13%), Query Frame = -2 
Query: 1590 VASASAHKNEMGIAADTDG-------HRDPCI*IFVPNAPVPTQLHHYARLAAGAQQQEGI 1751
            + SASAHK+EMGIAA TDG          P I  FVP+APVPTQLHHYARLAAGA QQEG 
Sbjct:    1 MTSASAHKDEMGIAAYTDGLEXXXXXXXXPRICTFVPDAPVPTQLHHYARLAAGAPQQEGF 61
[Close]
BLAST of mRNA_S-firma_M_contig9478.20456.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 4.610e-13
Identity = 70/178 (39.33%), Postives = 86/178 (48.31%), Query Frame = 3 
Query:  999 AARMAGTRGAVQVVDSLLRSGADETLLSEEREVAADVVGVHSDEEEXXXXXXXXXXXXXXDAEDVEPVRKLLVNAPVDRAWRRRGYLVLCRAHPERVKLIQE---------SSRTSAPADLARKTCRGTMMAASGRTRTAGSSTAEDERTSGD-WTGLVEMVLGLQEEDIFRTIIGFL 1502
            AA  AG +G+ ++VD LLR GADET      +  AD VG H  E                   +V  V +LL NAP DRAWRRRG LVLCRA   R +L QE         S RT + A LAR    G           AG      E  +GD W    + V+ L+EE IFR+++GFL
Sbjct:  268 AASYAGRQGSAELVDLLLRRGADETTPDRNGQQPADRVG-HCME-----------LGDVLLGHEVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGGDTRGGLSRRTRSRAKLARSDAVG-----------AGCRRGTPEGGTGDEWRSASKRVVELEEEGIFRSVVGFL 422
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9478.20456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXK5_9PHAE1.570e-4260.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKL4_ECTSI9.740e-2440.18Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
D7G137_ECTSI3.160e-2146.30Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7G1U1_ECTSI4.870e-2053.58Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7G981_ECTSI2.040e-1640.85Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5JES7_9PHAE4.390e-1571.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHY9_9PHAE7.400e-1539.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0B9_9PHAE3.340e-1466.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB47_9PHAE1.030e-1367.21Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FYD0_ECTSI4.610e-1339.33Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9478contigS-firma_M_contig9478:1607..3917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue2.9e-23
Seed eggNOG ortholog2880.D7FKL4
KEGG koko:K21440
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size1797
Cds size1416
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9478.20456.1prot_S-firma_M_contig9478.20456.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9478 1696..3111 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828780.966361-UTR-S-firma_M_contig9478:1606..16951622828780.966361-UTR-S-firma_M_contig9478:1606..1695Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9478 1607..1695 +
1697105158.5542424-UTR-S-firma_M_contig9478:1606..16951697105158.5542424-UTR-S-firma_M_contig9478:1606..1695Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9478 1607..1695 +
1622828780.9951258-UTR-S-firma_M_contig9478:3111..31161622828780.9951258-UTR-S-firma_M_contig9478:3111..3116Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9478 3112..3116 +
1697105158.586575-UTR-S-firma_M_contig9478:3111..31161697105158.586575-UTR-S-firma_M_contig9478:3111..3116Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9478 3112..3116 +
1622828781.0073798-UTR-S-firma_M_contig9478:3630..39171622828781.0073798-UTR-S-firma_M_contig9478:3630..3917Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9478 3631..3917 +
1697105158.5969548-UTR-S-firma_M_contig9478:3630..39171697105158.5969548-UTR-S-firma_M_contig9478:3630..3917Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9478 3631..3917 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828780.9814093-CDS-S-firma_M_contig9478:1695..31111622828780.9814093-CDS-S-firma_M_contig9478:1695..3111Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9478 1696..3111 +
1697105158.5745091-CDS-S-firma_M_contig9478:1695..31111697105158.5745091-CDS-S-firma_M_contig9478:1695..3111Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9478 1696..3111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9478.20456.1

>prot_S-firma_M_contig9478.20456.1 ID=prot_S-firma_M_contig9478.20456.1|Name=mRNA_S-firma_M_contig9478.20456.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=472bp
MEAPPASERPTGQNLHYLLLRSIQEEDNRDEHPQQPPRVANRERRESLRG
VEEEIFDLLSEALTLDEWSEFLTAPLERAAAKGNGGLAQKLRLAGAAVGD
ALHHAVRGGHAGIVYEVLQGGASAADEDANGDTPLHVAARGGNTEMVELL
ILEGADGDATNESDCTPLYLAVRFGQVGAALALLAAGADIDLRCRHRQEW
VVHLAARKGCVEILRAAMERGADVLAVDQLEYTTLHVAAVRNQVETIDVL
VKAGANIEARTHFGGTPLFYAALHLHLDALLALVKHGAGVNTADMHGETP
LHAAARMAGTRGAVQVVDSLLRSGADETLLSEEREVAADVVGVHSDEEED
SDDDDSDEEEDSSDAEDVEPVRKLLVNAPVDRAWRRRGYLVLCRAHPERV
KLIQESSRTSAPADLARKTCRGTMMAASGRTRTAGSSTAEDERTSGDWTG
LVEMVLGLQEEDIFRTIIGFL*
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mRNA from alignment at S-firma_M_contig9478:1607..3917+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9478.20456.1 ID=mRNA_S-firma_M_contig9478.20456.1|Name=mRNA_S-firma_M_contig9478.20456.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2311bp|location=Sequence derived from alignment at S-firma_M_contig9478:1607..3917+ (Sphaerotrichia firma Sfir_13m male)
CGATGCACAACGCACGTACACGAAACCTTAGCGTTAGTGTTCCAACTTCT
CTGTAACCTGCGTCTCCAAAGAGCTGAGACTAGGTCAGGATGGAGGCACC
CCCTGCTTCCGAAAGACCCACAGGCCAAAACCTACACTATCTGCTACTTC
GAAGTATACAGGAAGAAGACAACAGGGACGAGCATCCACAGCAGCCACCC
CGTGTGGCGAACCGGGAAAGAAGGGAATCCCTTCGAGGAGTAGAGGAGGA
AATTTTCGACCTCCTCTCCGAAGCCTTGACATTAGATGAATGGTCGGAAT
TTTTGACAGCTCCACTCGAGCGTGCAGCGGCCAAGGGCAACGGAGGTCTC
GCCCAGAAGCTGCGTTTGGCAGGAGCAGCGGTCGGGGATGCACTGCATCA
TGCCGTTCGGGGCGGTCATGCAGGGATCGTGTATGAAGTCCTGCAAGGTG
GAGCTTCTGCCGCTGACGAGGACGCGAACGGTGACACCCCTCTTCACGTT
GCTGCCCGAGGAGGCAACACGGAGATGGTGGAACTGCTTATTCTAGAGGG
GGCCGACGGAGACGCGACGAACGAGTCCGACTGTACACCGCTTTATCTCG
CAGTCCGTTTCGGTCAAGTGGGTGCCGCGCTGGCCCTTTTGGCTGCTGGC
GCGGACATCGACCTTCGGTGCCGACACCGCCAGGAATGGGTGGTCCATTT
GGCGGCTCGAAAAGGTTGTGTGGAGATCTTGAGGGCCGCGATGGAGCGTG
GAGCGGATGTACTTGCCGTTGACCAACTCGAATACACCACCCTCCACGTC
GCCGCTGTCCGCAACCAGGTCGAGACAATCGATGTGCTCGTTAAGGCTGG
GGCCAACATCGAAGCACGCACCCACTTCGGAGGCACACCTCTTTTCTATG
CTGCCCTCCATCTCCACCTTGACGCCTTACTGGCCCTGGTGAAGCATGGT
GCTGGCGTCAACACCGCTGATATGCACGGAGAAACGCCGCTGCACGCTGC
AGCGCGCATGGCCGGGACACGAGGAGCCGTGCAGGTGGTGGACTCTCTGC
TGAGGTCGGGCGCAGATGAGACTCTTCTCAGTGAGGAACGTGAGGTGGCC
GCGGATGTTGTCGGTGTCCACAGCGATGAAGAGGAGGACAGCGATGATGA
CGACAGCGATGAAGAGGAGGACAGCAGTGATGCTGAGGATGTCGAGCCCG
TGCGCAAGCTGTTGGTGAACGCTCCGGTGGACCGGGCATGGCGTCGCCGG
GGCTACCTGGTGCTGTGCCGCGCTCACCCCGAGAGGGTGAAGCTGATACA
GGAAAGCAGCCGCACGAGTGCACCTGCCGATCTAGCACGGAAGACTTGCC
GCGGTACTATGATGGCTGCGAGTGGTCGCACTAGGACAGCCGGGAGTAGC
ACAGCGGAGGACGAGCGGACGAGCGGCGACTGGACCGGTTTGGTGGAAAT
GGTGCTTGGGTTGCAGGAAGAGGACATATTCCGGACGATCATCGGGTTTC
TGTGACGCCGGTGAGAGCACGTTTCGTGACCGGTAGGCCATCTCGTTCAG
CAAAACAATCGCGTGTATTCCGTGTATTTGCTCGTACCGTTCGGGCAGAA
TGATGGATGCAAACCTTCTACACTGGCTAGTTGGGCGCGACATGATTGTT
CTTGACCAACTCTCTCTAGGAGCATTCGTCAGCGTGTTTGAAGTGTCGTC
CTGGCTTGATTCGCAACCAGCCTAGGGCTTTTCTCGGTACGTAACCGCGG
CTTGCTGTTTTACCGTCGTGCCCCAAAACATCGTTCAGTGCGCTCTCATC
CACATGGTATCCTTCCTCTGTTCCGAGATGGACGCGAACACAATCTGGGG
AAAGACACACAAAGACTGAAGTCGCAAGGTGGAAGAAATTAATGTAGTTG
GACGATTACTCAGCCCGTGGTGCTCTGTGTTTGTATTCTGAACCATCAGC
CATTCTGTCATTCTGACTCTTTCGATTTTTTTCGTCTGTCCATCTCCCCT
TCTTCTCCTCGCTGCCTCGGCAAGGTTTTCGCCTAGTCATGAACCAAAAC
GAGGGGGGGGGTCTTTCTAGCGAGCAAGGCTAGACTCACCCTCAAGGTGG
ACCGATACCTTCTTGCTGCTGCGCACCCGCCGCGAGGCGTGCGTAGTGGT
GGAGCTGGGTCGGGACTGGTGCGTTAGGCACAAAAATTCAGATGCACGGG
TCTCTATGGCCGTCGGTGTCGGCAGCAATGCCCATCTCATTTTTGTGCGC
GGAGGCAGACGCCACCAGAGGTGAACGGACACTACGAACACAGCCCTAGC
TTCGCCAGCGG
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Coding sequence (CDS) from alignment at S-firma_M_contig9478:1607..3917+

>mRNA_S-firma_M_contig9478.20456.1 ID=mRNA_S-firma_M_contig9478.20456.1|Name=mRNA_S-firma_M_contig9478.20456.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=2832bp|location=Sequence derived from alignment at S-firma_M_contig9478:1607..3917+ (Sphaerotrichia firma Sfir_13m male)
ATGGAGGCACCCCCTGCTTCCGAAAGACCCACAGGCCAAAACCTACACTA
TCTGCTACTTCGAAGTATACAGGAAGAAGACAACAGGGACGAGCATCCAC
AGCAGCCACCCCGTGTGGCGAACCGGGAAAGAAGGGAATCCCTTCGAGGA
GTAGAGGAGGAAATTTTCGACCTCCTCTCCGAAGCCTTGACATTAGATGA
ATGGTCGGAATTTTTGACAGCTCCACTCGAGCGTGCAGCGGCCAAGGGCA
ACGGAGGTCTCGCCCAGAAGCTGCGTTTGGCAGGAGCAGCGGTCGGGGAT
GCACTGCATCATGCCGTTCGGGGCGGTCATGCAGGGATCGTGTATGAAGT
CCTGCAAGGTGGAGCTTCTGCCGCTGACGAGGACGCGAACGGTGACACCC
CTCTTCACGTTGCTGCCCGAGGAGGCAACACGGAGATGGTGGAACTGCTT
ATTCTAGAGGGGGCCGACGGAGACGCGACGAACGAGTCCGACTGTACACC
GCTTTATCTCGCAGTCCGTTTCGGTCAAGTGGGTGCCGCGCTGGCCCTTT
TGGCTGCTGGCGCGGACATCGACCTTCGGTGCCGACACCGCCAGGAATGG
GTGGTCCATTTGGCGGCTCGAAAAGGTTGTGTGGAGATCTTGAGGGCCGC
GATGGAGCGTGGAGCGGATGTACTTGCCGTTGACCAACTCGAATACACCA
CCCTCCACGTCGCCGCTGTCCGCAACCAGGTCGAGACAATCGATGTGCTC
GTTAAGGCTGGGGCCAACATCGAAGCACGCACCCACTTCGGAGGCACACC
TCTTTTCTATGCTGCCCTCCATCTCCACCTTGACGCCTTACTGGCCCTGG
TGAAGCATGGTGCTGGCGTCAACACCGCTGATATGCACGGAGAAACGCCG
CTGCACGCTGCAGCGCGCATGGCCGGGACACGAGGAGCCGTGCAGGTGGT
GGACTCTCTGCTGAGGTCGGGCGCAGATGAGACTCTTCTCAGTGAGGAAC
GTGAGGTGGCCGCGGATGTTGTCGGTGTCCACAGCGATGAAGAGGAGGAC
AGCGATGATGACGACAGCGATGAAGAGGAGGACAGCAGTGATGCTGAGGA
TGTCGAGCCCGTGCGCAAGCTGTTGGTGAACGCTCCGGTGGACCGGGCAT
GGCGTCGCCGGGGCTACCTGGTGCTGTGCCGCGCTCACCCCGAGAGGGTG
AAGCTGATACAGGAAAGCAGCCGCACGAGTGCACCTGCCGATCTAGCACG
GAAGACTTGCCGCGGTACTATGATGGCTGCGAGTGGTCGCACTAGGACAG
CCGGGAGTAGCACAGCGGAGGACGAGCGGACGAGCGGCGACTGGACCGGT
TTGGTGGAAATGGTGCTTGGGTTGCAGGAAGAGGACATATTCCGGACGAT
CATCGGGTTTCTGTGAATGGAGGCACCCCCTGCTTCCGAAAGACCCACAG
GCCAAAACCTACACTATCTGCTACTTCGAAGTATACAGGAAGAAGACAAC
AGGGACGAGCATCCACAGCAGCCACCCCGTGTGGCGAACCGGGAAAGAAG
GGAATCCCTTCGAGGAGTAGAGGAGGAAATTTTCGACCTCCTCTCCGAAG
CCTTGACATTAGATGAATGGTCGGAATTTTTGACAGCTCCACTCGAGCGT
GCAGCGGCCAAGGGCAACGGAGGTCTCGCCCAGAAGCTGCGTTTGGCAGG
AGCAGCGGTCGGGGATGCACTGCATCATGCCGTTCGGGGCGGTCATGCAG
GGATCGTGTATGAAGTCCTGCAAGGTGGAGCTTCTGCCGCTGACGAGGAC
GCGAACGGTGACACCCCTCTTCACGTTGCTGCCCGAGGAGGCAACACGGA
GATGGTGGAACTGCTTATTCTAGAGGGGGCCGACGGAGACGCGACGAACG
AGTCCGACTGTACACCGCTTTATCTCGCAGTCCGTTTCGGTCAAGTGGGT
GCCGCGCTGGCCCTTTTGGCTGCTGGCGCGGACATCGACCTTCGGTGCCG
ACACCGCCAGGAATGGGTGGTCCATTTGGCGGCTCGAAAAGGTTGTGTGG
AGATCTTGAGGGCCGCGATGGAGCGTGGAGCGGATGTACTTGCCGTTGAC
CAACTCGAATACACCACCCTCCACGTCGCCGCTGTCCGCAACCAGGTCGA
GACAATCGATGTGCTCGTTAAGGCTGGGGCCAACATCGAAGCACGCACCC
ACTTCGGAGGCACACCTCTTTTCTATGCTGCCCTCCATCTCCACCTTGAC
GCCTTACTGGCCCTGGTGAAGCATGGTGCTGGCGTCAACACCGCTGATAT
GCACGGAGAAACGCCGCTGCACGCTGCAGCGCGCATGGCCGGGACACGAG
GAGCCGTGCAGGTGGTGGACTCTCTGCTGAGGTCGGGCGCAGATGAGACT
CTTCTCAGTGAGGAACGTGAGGTGGCCGCGGATGTTGTCGGTGTCCACAG
CGATGAAGAGGAGGACAGCGATGATGACGACAGCGATGAAGAGGAGGACA
GCAGTGATGCTGAGGATGTCGAGCCCGTGCGCAAGCTGTTGGTGAACGCT
CCGGTGGACCGGGCATGGCGTCGCCGGGGCTACCTGGTGCTGTGCCGCGC
TCACCCCGAGAGGGTGAAGCTGATACAGGAAAGCAGCCGCACGAGTGCAC
CTGCCGATCTAGCACGGAAGACTTGCCGCGGTACTATGATGGCTGCGAGT
GGTCGCACTAGGACAGCCGGGAGTAGCACAGCGGAGGACGAGCGGACGAG
CGGCGACTGGACCGGTTTGGTGGAAATGGTGCTTGGGTTGCAGGAAGAGG
ACATATTCCGGACGATCATCGGGTTTCTGTGA
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