mRNA_S-firma_M_contig9472.20451.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9472.20451.1
Unique NamemRNA_S-firma_M_contig9472.20451.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9472.20451.1 vs. uniprot
Match: A0A6H5K771_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K771_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 1.410e-59
Identity = 98/105 (93.33%), Postives = 102/105 (97.14%), Query Frame = 3 
Query:  474 RGFVFGSEHFAYQNQNLMITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVHKDGRVDITVGWLKFDLAAAALAS 788
            RG+V+G+EHFAYQ QN+MITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVH  GRVDITVGWLKFDLAAAALAS
Sbjct:  292 RGYVYGAEHFAYQTQNMMITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVHNHGRVDITVGWLKFDLAAAALAS 396
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BLAST of mRNA_S-firma_M_contig9472.20451.1 vs. uniprot
Match: D7G3Z3_ECTSI (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z3_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 1.230e-58
Identity = 97/105 (92.38%), Postives = 101/105 (96.19%), Query Frame = 3 
Query:  474 RGFVFGSEHFAYQNQNLMITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVHKDGRVDITVGWLKFDLAAAALAS 788
            RG+V+G+EHFAYQ QN+MITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVH  GRVDITVGWLKFDLAAAA AS
Sbjct:  852 RGYVYGAEHFAYQTQNMMITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVHNHGRVDITVGWLKFDLAAAAHAS 956
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BLAST of mRNA_S-firma_M_contig9472.20451.1 vs. uniprot
Match: A0A7S0FC12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0FC12_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.900e-20
Identity = 39/75 (52.00%), Postives = 59/75 (78.67%), Query Frame = 3 
Query:  504 AYQNQNLMITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVHKDG 728
            A+++Q+++ITS+WMT+ +QCC A++K   YY  + D +LG+FL D+CFN +LKCQN +CK+S  +H LSF+H DG
Sbjct:   37 AFEHQSILITSVWMTEKSQCCPAEVKGICYYSLQ-DVSLGQFLRDSCFNLSLKCQNTSCKKSVLEHSLSFIHNDG 110
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BLAST of mRNA_S-firma_M_contig9472.20451.1 vs. uniprot
Match: A0A448ZKD0_9STRA (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKD0_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.040e-19
Identity = 45/81 (55.56%), Postives = 62/81 (76.54%), Query Frame = 3 
Query:  504 AYQNQNLMITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVHKDGRVDITV 746
            A+ +Q+++ITS+WMT  TQCC A++K   YY  + D +LG+FL D+CFN +LKCQN +CK+S  DH LSFVH DG ++ITV
Sbjct: 1123 AFDHQSILITSVWMTDKTQCCPAEVKGICYYSVQ-DVSLGQFLRDSCFNLSLKCQNPSCKKSVLDHSLSFVHNDGLINITV 1202
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BLAST of mRNA_S-firma_M_contig9472.20451.1 vs. uniprot
Match: F0YMC6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMC6_AURAN)

HSP 1 Score: 72.4 bits (176), Expect = 1.040e-10
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 3 
Query:  504 AYQNQNLMITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVHKDGRVDITV 746
            A+ +Q+L++TS+WM+Q  QC +A++K   YY  + D  LG+FL+D+CFN +LK  + + K+S  D    F H DGR+ ITV
Sbjct:  510 AFDHQSLLVTSVWMSQRAQCASAEVKGILYYTPQ-DVCLGQFLLDSCFNVDLKFPHGD-KKSVLDITQIFYHNDGRIPITV 588
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BLAST of mRNA_S-firma_M_contig9472.20451.1 vs. uniprot
Match: A0A482T4J2_9ARCH (PIPK domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T4J2_9ARCH)

HSP 1 Score: 61.2 bits (147), Expect = 5.600e-7
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 3 
Query:  483 VFGSEHFAY----QNQNLMITSLWMTQGT----QCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVHKDGRVDITV 746
            +F ++H A      +Q L+I SL + +GT    Q   +DLK  +YY  KHD A G+F++DNCF  +   +  N +    D  L+FVH+ GRVDITV
Sbjct:  191 LFRTKHLAKFQVESHQTLLINSLLIGEGTSFPQQKSPSDLKGIKYYT-KHDIAFGQFIIDNCFQLS---RGGNREPRMLDQTLTFVHRPGRVDITV 282
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BLAST of mRNA_S-firma_M_contig9472.20451.1 vs. uniprot
Match: A0A7S0SRH4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SRH4_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.200e-6
Identity = 31/78 (39.74%), Postives = 51/78 (65.38%), Query Frame = 3 
Query:  513 NQNLMITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVHKDGRVDITV 746
            +Q +++TSL M + TQ   A++K  RYY ++ D +LG+FL++NCF+     +    + S  D  LSF+H+ GR+DI+V
Sbjct:   65 HQTILVTSLLMHENTQRSRAEVKGIRYYTNQ-DLSLGQFLIENCFSI---IRTGYRESSMLDQTLSFIHRPGRLDISV 138
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9472.20451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K771_9PHAE1.410e-5993.33PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G3Z3_ECTSI1.230e-5892.381-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A7S0FC12_9STRA4.900e-2052.00Hypothetical protein (Fragment) n=1 Tax=Rhizosolen... [more]
A0A448ZKD0_9STRA1.040e-1955.561-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
F0YMC6_AURAN1.040e-1044.44Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A482T4J2_9ARCH5.600e-740.63PIPK domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A7S0SRH4_9STRA1.200e-639.74Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9472contigS-firma_M_contig9472:753..2108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size794
Cds size525
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9472.20451.1prot_S-firma_M_contig9472.20451.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9472 1568..2108 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828780.636205-UTR-S-firma_M_contig9472:752..9361622828780.636205-UTR-S-firma_M_contig9472:752..936Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9472 753..936 -
1697105158.3494391-UTR-S-firma_M_contig9472:752..9361697105158.3494391-UTR-S-firma_M_contig9472:752..936Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9472 753..936 -
1622828780.648432-UTR-S-firma_M_contig9472:1484..15671622828780.648432-UTR-S-firma_M_contig9472:1484..1567Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9472 1485..1567 -
1697105158.3608239-UTR-S-firma_M_contig9472:1484..15671697105158.3608239-UTR-S-firma_M_contig9472:1484..1567Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9472 1485..1567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828780.6619697-CDS-S-firma_M_contig9472:1567..17231622828780.6619697-CDS-S-firma_M_contig9472:1567..1723Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9472 1568..1723 -
1697105158.368495-CDS-S-firma_M_contig9472:1567..17231697105158.368495-CDS-S-firma_M_contig9472:1567..1723Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9472 1568..1723 -
1622828780.6756992-CDS-S-firma_M_contig9472:1739..21081622828780.6756992-CDS-S-firma_M_contig9472:1739..2108Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9472 1740..2108 -
1697105158.3763773-CDS-S-firma_M_contig9472:1739..21081697105158.3763773-CDS-S-firma_M_contig9472:1739..2108Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9472 1740..2108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9472.20451.1

>prot_S-firma_M_contig9472.20451.1 ID=prot_S-firma_M_contig9472.20451.1|Name=mRNA_S-firma_M_contig9472.20451.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=175bp
FLEAAGTVRVPPPLYPSAGDGGGRGGGLSPTAGEAAAGAGFESTPHQERE
AALLRRPGSDDEDDDGYEDDDTGSVLEQPAMLSASLGVDFGASPPFLQLH
KGVHGAAAARRFIESNHSVAAAARRWLGRAHRPVRRGRGPGGGKRRRRWS
APAAAAAGGGSCSAPSTLPTRTRT*
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mRNA from alignment at S-firma_M_contig9472:753..2108-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9472.20451.1 ID=mRNA_S-firma_M_contig9472.20451.1|Name=mRNA_S-firma_M_contig9472.20451.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1356bp|location=Sequence derived from alignment at S-firma_M_contig9472:753..2108- (Sphaerotrichia firma Sfir_13m male)
TTTCTCGAGGCCGCCGGCACGGTAAGGGTGCCGCCGCCGCTCTACCCTTC
CGCGGGGGACGGCGGCGGCCGTGGCGGCGGTCTTTCCCCCACGGCGGGCG
AAGCGGCAGCGGGGGCGGGCTTTGAGAGCACCCCCCACCAAGAGCGCGAA
GCGGCTTTGCTCAGGCGGCCGGGCAGTGACGACGAAGACGACGACGGATA
CGAAGACGACGATACGGGGAGCGTGCTGGAGCAGCCGGCCATGCTGTCGG
CGTCTCTCGGGGTTGACTTCGGCGCGTCGCCCCCGTTCTTGCAGCTCCAC
AAGGGGGTGCATGGCGCCGCCGCCGCCAGAAGGTTCATCGAAAGCAACCA
CTCAGTAGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGACGGTGGCTGGGA
AGAGCGCATCGGCCGGTAAGACGAGGGCGGGGGCCGGGAGGAGGGAAACG
CCGACGACGATGGTCGGCACCGGCGGCGGCGGCGGCGGGCGGGGGTTCGT
GTTCGGCTCCGAGCACTTTGCCTACCAGAACCAGAACCTGATGATCACGA
GCCTGTGGATGACGCAGGGGACGCAGTGCTGCAACGCCGACCTCAAGTTC
TTTCGGTACTACAAGCACAAGCACGTGAGTTACCACTGCCAGAAGTTTGA
AGGTTTGAAGGCTGAGCTCGGTTTATCGACCTCAAGTTCTTTCGGTACTA
CAAGCTCAAGCACGTGAGTTGCCACTGCTAGCAGTTGGAAGGTTTGAAGG
CTGAGCTCGGTTTGTCGACCTCAAGCTCTTTCGGTGCTACAAGCACAAGC
ACGTGAGTTACCACTGCCAGCAGTTGGAGGGTTTGAAGGTTGAGCCTCGG
TTTGTCGTAGGCCTGTACGCCACAAAGGCGCTCACGTCAGCTGAGCTTAG
GCCGAGGGGGTTAGTCGTCGTAGGTTGTGTGCTCGCTGCTGAGTAGCACC
AGCAGCAACAACAGCTGCTGAAGCAGGAATCGGTGACTTGGCCGTTTGGT
GCCGGGAGTCGAGCGGAGTCGAGTCGCGCCTTCCGTTTATTGTCGTCGGT
TTAATCTGTTCAAAACGTACCGCGTGATTTTCCACGCAACACGCCGCGCC
AATGTTGGGTACAAACGCTCGCGTTGCCGTTTTTCAAACCTTTTTTTCCC
CCCCCGTTTTTTTCGCGTTCAGGACACGGCGCTGGGCAAGTTCCTCGTGG
ACAACTGCTTCAACCCGAACCTCAAGTGCCAGAACGTTAACTGCAAGCGC
AGCGCCCGCGACCACGTGCTCAGCTTCGTGCACAAGGATGGCCGAGTGGA
CATCACCGTAGGCTGGCTCAAGTTCGACCTCGCTGCTGCCGCTCTCGCCT
CCGCCG
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Coding sequence (CDS) from alignment at S-firma_M_contig9472:753..2108-

>mRNA_S-firma_M_contig9472.20451.1 ID=mRNA_S-firma_M_contig9472.20451.1|Name=mRNA_S-firma_M_contig9472.20451.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1050bp|location=Sequence derived from alignment at S-firma_M_contig9472:753..2108- (Sphaerotrichia firma Sfir_13m male)
TTTCTCGAGGCCGCCGGCACGGTAAGGGTGCCGCCGCCGCTCTACCCTTC
CGCGGGGGACGGCGGCGGCCGTGGCGGCGGTCTTTCCCCCACGGCGGGCG
AAGCGGCAGCGGGGGCGGGCTTTGAGAGCACCCCCCACCAAGAGCGCGAA
GCGGCTTTGCTCAGGCGGCCGGGCAGTGACGACGAAGACGACGACGGATA
CGAAGACGACGATACGGGGAGCGTGCTGGAGCAGCCGGCCATGCTGTCGG
CGTCTCTCGGGGTTGACTTCGGCGCGTCGCCCCCGTTCTTGCAGCTCCAC
AAGGGGGTGCATGGCGCCGCCGCCGCCAGAAGGTTCATCGAAAGCAACCA
CTCAGTAGCGGCGGCGGCGTTTCTCGAGGCCGCCGGCACGGTAAGGGTGC
CGCCGCCGCTCTACCCTTCCGCGGGGGACGGCGGCGGCCGTGGCGGCGGT
CTTTCCCCCACGGCGGGCGAAGCGGCAGCGGGGGCGGGCTTTGAGAGCAC
CCCCCACCAAGAGCGCGAAGCGGCTTTGCTCAGGCGGCCGGGCAGTGACG
ACGAAGACGACGACGGATACGAAGACGACGATACGGGGAGCGTGCTGGAG
CAGCCGGCCATGCTGTCGGCGTCTCTCGGGGTTGACTTCGGCGCGTCGCC
CCCGTTCTTGCAGCTCCACAAGGGGGTGCATGGCGCCGCCGCCGCCAGAA
GGTTCATCGAAAGCAACCACTCAGTAGCGGCGGCGGCGCGACGGTGGCTG
GGAAGAGCGCATCGGCCGGTAAGACGAGGGCGGGGGCCGGGAGGAGGGAA
ACGCCGACGACGATGGTCGGCACCGGCGGCGGCGGCGGCGGGCGGGGGTT
CGTGTTCGGCTCCGAGCACTTTGCCTACCAGAACCAGAACCTGACGACGG
TGGCTGGGAAGAGCGCATCGGCCGGTAAGACGAGGGCGGGGGCCGGGAGG
AGGGAAACGCCGACGACGATGGTCGGCACCGGCGGCGGCGGCGGCGGGCG
GGGGTTCGTGTTCGGCTCCGAGCACTTTGCCTACCAGAACCAGAACCTGA
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