mRNA_S-firma_M_contig945.20432.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig945.20432.1 vs. uniprot
Match: A0A6H5K995_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K995_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 2.740e-14 Identity = 47/117 (40.17%), Postives = 61/117 (52.14%), Query Frame = 1
Query: 196 SNGEWSATESLVVLHIECIAAMATRRRTTASVGRIPVDRRLQSYPDCTGVVEWIGDGWCDD-TENTSGCSWDGGDCCECECV----DGEDWVCGEEADYNCIDPSSACYIYATPAPT 531
S W A +LV L C +AT T+ + + YPDC G ++ IGDG+CDD T N C +DGGDCCEC+CV ED + ++C D SSACY+ P PT
Sbjct: 8 SRARW-AVVALVALSAGC-GRVATATSTSVDL--------IDLYPDCEGELDHIGDGYCDDATNNLEECGFDGGDCCECDCVVPADASEDQLAYSCVQFSCDDTSSACYVVPAPTPT 114
BLAST of mRNA_S-firma_M_contig945.20432.1 vs. uniprot
Match: D7G9A3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A3_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 8.760e-14 Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 1
Query: 325 YPDCTGVVEWIGDGWCDD-TENTSGCSWDGGDCCECECV----DGEDWVCGEEADYNCIDPSSACYIYATPAPT 531
YPDC G ++ IGDG+CDD T N C +DGGDCCEC+CV ED + ++C D SSACY+ P PT
Sbjct: 5 YPDCEGELDLIGDGYCDDATNNLEECGFDGGDCCECDCVIPADASEDQLAYSCVQFSCDDTSSACYVVPAPTPT 78
BLAST of mRNA_S-firma_M_contig945.20432.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 7.310e-12 Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 307 DRRLQSYPDCTGVVEWIGDGWCDDTENTSGCSWDGGDCCECEC--VDGEDWVCGEEADYNCIDPSSACY 507
D + + +C G V IGDGWCD N C +DGGDCC C C V +D+ CGE+A ++C DPS+AC+
Sbjct: 46 DITVDMFDNC-GYVSGIGDGWCDSNNNKEACGYDGGDCCSCTCESVWDDDYTCGEDAFFDCKDPSAACF 113
BLAST of mRNA_S-firma_M_contig945.20432.1 vs. uniprot
Match: A0A2E8S136_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E8S136_9DELT) HSP 1 Score: 73.6 bits (179), Expect = 2.610e-11 Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 334 CTGVVEWIGDGWCDDTENTSGCSWDGGDCCECECVDGEDWVCGEEADYNCIDPSS 498
CTG W+GDGWCDD+ N + CSWDGGDCCE CV + CG +Y+C+DP+S
Sbjct: 268 CTGNEMWVGDGWCDDSNNNATCSWDGGDCCESACVSAS-YTCGAN-NYDCLDPNS 320
BLAST of mRNA_S-firma_M_contig945.20432.1 vs. uniprot
Match: D7FX76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX76_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 2.430e-10 Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 1
Query: 325 YPDCTGVVEWIGDGWCDDTENTSGCSWDGGDCCECECVDGEDWVCGEEAD-YNCIDPSSACYIYATPAPTVRPTPAPTTA 561
YPDC + +GD CD N + C +DGGDCCEC CVD D VCGE Y C+DP + ++P+PT +PT++
Sbjct: 59 YPDCEADMALVGDSLCDFDVNVAECGFDGGDCCECTCVDTGDQVCGEGGTGYFCVDPDAPQDCASSPSPTPNTPSSPTSS 138
BLAST of mRNA_S-firma_M_contig945.20432.1 vs. uniprot
Match: D7FSP3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP3_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 2.940e-10 Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1
Query: 322 SYPDCTGVVEWIGDGWCDDTENTSGCSWDGGDCCECECVDGEDWVCGEEADYNCIDPSSAC 504
++ DC EWI DG CD + N SGC +DGGDCC C+C D + + CG + + C+DPSS+C
Sbjct: 26 TFSDC--YQEWISDGMCDSSNNNSGCEYDGGDCCSCDCFD-DTYECGTDG-FTCLDPSSSC 82
BLAST of mRNA_S-firma_M_contig945.20432.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 5.960e-10 Identity = 36/80 (45.00%), Postives = 45/80 (56.25%), Query Frame = 1
Query: 325 YPDCTGVVEWIGDGWCDDTENTSGCSWDGGDCCECECVDGEDWVCGEEAD-YNCIDPSSACYIYATPAPTVRPTPAPTTA 561
YPDC +GD CD N + C +DGGDCCEC CVD D VCGE Y C+DP + + P+PT APT++
Sbjct: 61 YPDCEADTALVGDSICDLDFNVAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVDPDAPQDCASAPSPTPNTPSAPTSS 140
BLAST of mRNA_S-firma_M_contig945.20432.1 vs. uniprot
Match: A0A6H5K5D1_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5D1_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 7.660e-10 Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 1
Query: 286 SVGRIPVDRRLQSYPDCTGVVEWIGDGWCDDTENTSGCSWDGGDCCECECVDGEDWVCGEEADYNCIDPSSACY 507
+V I V +Y +I DG+CD + N SGC +DGGDCC C+C+D + + CG + CIDP+S+CY
Sbjct: 12 TVACISVATGFTTYDSSGCFTSYISDGFCDSSNNISGCDYDGGDCCSCDCLD-DTYQCGVVG-FTCIDPTSSCY 83
BLAST of mRNA_S-firma_M_contig945.20432.1 vs. uniprot
Match: D7FSN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN8_ECTSI) HSP 1 Score: 66.2 bits (160), Expect = 2.280e-9 Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1
Query: 310 RRLQSYPDCTGVV---EWIGDGWCDDTENTSGCSWDGGDCCECECVDGEDWVCGEEADYNCIDPSS 498
+R + YP + +I DGWCD NT C WDGGDCCEC+CVD + CG ADY+C++PS+
Sbjct: 48 KRAEIYPGHEFLFYSSSYISDGWCDSYYNTEECDWDGGDCCECDCVDAL-YTCGV-ADYDCLNPSA 111
BLAST of mRNA_S-firma_M_contig945.20432.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 67.8 bits (164), Expect = 2.560e-9 Identity = 31/71 (43.66%), Postives = 40/71 (56.34%), Query Frame = 1
Query: 328 PDCTGVVE-----------WIGDGWCDDTENTSGCSWDGGDCCECECVDGEDWVCGEEADYNCIDPSSACY 507
PDC E W+ DG+CD + N C +DGGDCCEC CVDG D+ CG ++C+DP AC+
Sbjct: 136 PDCGNTTETAPENTTCEESWMNDGYCDSSNNYPSCDYDGGDCCECSCVDGHDYECGSNG-FSCLDP--ACF 203 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig945.20432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig945.20432.1 >prot_S-firma_M_contig945.20432.1 ID=prot_S-firma_M_contig945.20432.1|Name=mRNA_S-firma_M_contig945.20432.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=237bp MDNVLVVVMESSDELQFFWRDTSTGRLSAGIAANVGALTASAPGKITGLAback to top mRNA from alignment at S-firma_M_contig945:21541..24354- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig945.20432.1 ID=mRNA_S-firma_M_contig945.20432.1|Name=mRNA_S-firma_M_contig945.20432.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2814bp|location=Sequence derived from alignment at S-firma_M_contig945:21541..24354- (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig945:21541..24354- >mRNA_S-firma_M_contig945.20432.1 ID=mRNA_S-firma_M_contig945.20432.1|Name=mRNA_S-firma_M_contig945.20432.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1422bp|location=Sequence derived from alignment at S-firma_M_contig945:21541..24354- (Sphaerotrichia firma Sfir_13m male)back to top |