mRNA_S-firma_M_contig9421.20405.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9421.20405.1
Unique NamemRNA_S-firma_M_contig9421.20405.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9421.20405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9421contigS-firma_M_contig9421:328..735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size409
Cds size363
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828775.1866608-UTR-S-firma_M_contig9421:327..3721622828775.1866608-UTR-S-firma_M_contig9421:327..372Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9421 328..372 +
1697105154.9809005-UTR-S-firma_M_contig9421:327..3721697105154.9809005-UTR-S-firma_M_contig9421:327..372Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9421 328..372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828775.2064104-CDS-S-firma_M_contig9421:372..7351622828775.2064104-CDS-S-firma_M_contig9421:372..735Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9421 373..735 +
1697105155.0038872-CDS-S-firma_M_contig9421:372..7351697105155.0038872-CDS-S-firma_M_contig9421:372..735Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9421 373..735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9421.20405.1prot_S-firma_M_contig9421.20405.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9421 373..735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9421.20405.1

>prot_S-firma_M_contig9421.20405.1 ID=prot_S-firma_M_contig9421.20405.1|Name=mRNA_S-firma_M_contig9421.20405.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=121bp
MEEGSVIFGVAIAFAVKPRAPRGAGHARAVHQSTITLNDHVGNAQTNHQK
PAPQIGGEDPKRRNETTELNKARQPPGQGAGRGRKWQHHTPCIPTFRTPN
QQPPPPPPPPHLSLDSPRRPL
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mRNA from alignment at S-firma_M_contig9421:328..735+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9421.20405.1 ID=mRNA_S-firma_M_contig9421.20405.1|Name=mRNA_S-firma_M_contig9421.20405.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=408bp|location=Sequence derived from alignment at S-firma_M_contig9421:328..735+ (Sphaerotrichia firma Sfir_13m male)
ATCCGTGCAAGTTGGCGCTAATTGACGTATCATGTATCATGTATCATGGA
GGAAGGATCGGTGATCTTCGGGGTTGCCATCGCGTTCGCAGTCAAGCCAC
GCGCGCCACGGGGGGCCGGCCATGCCCGGGCGGTGCATCAGTCGACAATC
ACGCTCAACGACCACGTCGGTAATGCACAAACAAACCACCAGAAACCAGC
ACCACAAATAGGAGGAGAGGACCCCAAGCGGAGGAATGAAACAACCGAGC
TAAACAAAGCAAGACAGCCACCAGGGCAGGGCGCTGGGCGGGGGAGAAAA
TGGCAACACCACACACCATGCATCCCGACTTTCAGAACTCCAAACCAACA
ACCACCACCACCACCACCACCACCACACTTGTCGCTCGACTCACCACGAA
GACCCCTT
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Coding sequence (CDS) from alignment at S-firma_M_contig9421:328..735+

>mRNA_S-firma_M_contig9421.20405.1 ID=mRNA_S-firma_M_contig9421.20405.1|Name=mRNA_S-firma_M_contig9421.20405.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=726bp|location=Sequence derived from alignment at S-firma_M_contig9421:328..735+ (Sphaerotrichia firma Sfir_13m male)
ATGGAGGAAGGATCGGTGATCTTCGGGGTTGCCATCGCGTTCGCAGTCAA
GCCACGCGCGCCACGGGGGGCCGGCCATGCCCGGGCGGTGCATCAGTCGA
CAATCACGCTCAACGACCACGTCGGTAATGCACAAACAAACCACCAGAAA
CCAGCACCACAAATAGGAGGAGAGGACCCCAAGCGGAGGAATGAAACAAC
CGAGCTAAACAAAGCAAGACAGCCACCAGGGCAGGGCGCTGGGCGGGGGA
GAAAATGGCAACACCACACACCATGCATCCCGACTTTCAGAACTCCAAAC
CAACAACCACCACCACCACCACCACCACCACACTTGTCGCTCGACTCACC
ACGAAGACCCCTTATGGAGGAAGGATCGGTGATCTTCGGGGTTGCCATCG
CGTTCGCAGTCAAGCCACGCGCGCCACGGGGGGCCGGCCATGCCCGGGCG
GTGCATCAGTCGACAATCACGCTCAACGACCACGTCGGTAATGCACAAAC
AAACCACCAGAAACCAGCACCACAAATAGGAGGAGAGGACCCCAAGCGGA
GGAATGAAACAACCGAGCTAAACAAAGCAAGACAGCCACCAGGGCAGGGC
GCTGGGCGGGGGAGAAAATGGCAACACCACACACCATGCATCCCGACTTT
CAGAACTCCAAACCAACAACCACCACCACCACCACCACCACCACACTTGT
CGCTCGACTCACCACGAAGACCCCTT
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