mRNA_S-firma_M_contig9421.20404.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig9421.20404.1 vs. uniprot
Match: D7G823_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G823_ECTSI) HSP 1 Score: 758 bits (1957), Expect = 2.630e-271 Identity = 416/533 (78.05%), Postives = 444/533 (83.30%), Query Frame = 1
Query: 1 QTWPEEDNEERVAYQMLHGMRMPDGSALASVPLHAVREGSGADTHFVEAFYASDARSWLLRSRIDPAGPSAGARVRKWENMGIVQRVNKAEWAGGHIHFRGDRHNGDTLLRFVDRWDVEHCGESAGAALRAGPLGRMSYHLVPPGRSAAGRETLYGKLLHAIGEEAASGLWTRLGAEDWLVRTVARSEFPFSYRHQLAELPSPRKSDTG-AAPPVVPIGLAPQTPAAAAAAAAELPCSLHDGNR-PERDAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVSLKRLEPAAGNGRXXXXXXXXXXXXXXXXQSQSHAXXTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMGGYDGGXXXXXXXXTAAGKGMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDREDIDEWVALRGDKGSSWFVNVRFNLRFVMVSVSDPIPDD-DSEEMAEVA--EEGPEMTLSFALADVDIM 1584
+ WP+ED+EERVAYQ+L+GMR PDGSALASVPLHAVREG+GADTHFVEAFYASDAR WL RSR+DPAGP+AG RVRKWE+MGIVQRV KAE G IHFRG RH+GD LLRFVDRWDVEHCGESAGAALRAGPLGR+SY LVP G SA GR TL+G+LL+AIGEEAA+ LWTRLGAEDWLVRTVAR+EFPFSYRHQLAEL S R S AA V A+LPCSLHDGNR PERDA+CLCVFEHLCRNALFRRLRLPHRFQALV+VQLLGLKNLSPHYHP+KTDVFAAVSLKRL+ A G XXXXXXXXXXXXX E AAKRRGRNTSVTAIKRLLPTANGQ SQQSRWGAKAAFRFPLPEEASP VLAYGDGAYELVMGG T G GMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLG+LDDR DIDEWVALRGDKGSSWFVNVRF+LRFVMVSVSDP+PD+ DSE++A VA EE P MTLSFALADVDI+
Sbjct: 19 EAWPDEDSEERVAYQLLNGMRRPDGSALASVPLHAVREGAGADTHFVEAFYASDARGWLTRSRVDPAGPAAGDRVRKWESMGIVQRVTKAERGGSQIHFRGGRHHGDALLRFVDRWDVEHCGESAGAALRAGPLGRVSYQLVPGGGSAPGRGTLHGELLYAIGEEAAAELWTRLGAEDWLVRTVARAEFPFSYRHQLAELASHRGSRVAPAADTAVTSAXXXXXXXXXXXXXADLPCSLHDGNRRPERDAYCLCVFEHLCRNALFRRLRLPHRFQALVSVQLLGLKNLSPHYHPAKTDVFAAVSLKRLDMTAAGGNGNDXXXXXXXXXXXXXXX---------EAAAKRRGRNTSVTAIKRLLPTANGQESQQSRWGAKAAFRFPLPEEASPLVLAYGDGAYELVMGG------------TGKG-GMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGKLDDRGDIDEWVALRGDKGSSWFVNVRFSLRFVMVSVSDPVPDEEDSEDLAAVAVEEENPGMTLSFALADVDII 529
BLAST of mRNA_S-firma_M_contig9421.20404.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE) HSP 1 Score: 753 bits (1943), Expect = 1.240e-242 Identity = 401/539 (74.40%), Postives = 433/539 (80.33%), Query Frame = 1
Query: 1 QTWPEEDNEERVAYQMLHGMRMPDGSALASVPLHAVREGSGADTHFVEAFYASDARSWLLRSRIDPAGPSAGARVRKWENMGIVQRVNKAEWAGGHIHFRGDRHNGDTLLRFVDRWDVEHCGESAGAALRAGPLGRMSYHLVPPGRSAAGRETLYGKLLHAIGEEAASGLWTRLGAEDWLVRTVARSEFPFSYRHQLAELPSPRKSDTGAAPPVVPIGLAPQTPAAAAAAA---AELPCSLHDGNR-PERDAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVSLKRLEPAA----GNGRXXXXXXXXXXXXXXXXQSQSHAXXTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMGGYDGGXXXXXXXXTAAGKGMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDREDIDEWVALRGDKGSSWFVNVRFNLRFVMVSVSDPIPDDD-SEEMAEVA--EEGPEMTLSFALADVDIM 1584
+ WP+ED+EERVAYQ+L+GMR PDGSALASVPLHAVREG+GADTHFVEAFYASDAR WL RSR+DPAGP+AG RVRKWE+MGIVQRV KAE G IH RG RH+GD LLRFVDRWDVEHCGESAGAALRAGPLGR+SY LVP G SA GR TL+G+LL+AIGEEAA+ LWTRLGAEDWLVRTVAR+EFPFSYRHQLAEL R S A A+LPCSLHDGNR PERDA+CLCVFEHLCRNALFRRLRLPHRFQALV+VQLLGLKNLSPHYHP+KTDVFAAVSLKRL+ A GNG + +GGE AAKRRGRNTSVTAIKRLLPTANGQ +QQSRWGAKAAFRFPLPEEASP+VLAYGDGAYELVMGG T G GMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLG+LDDR DIDEWVALRGDKGSSWFVNVRF+LRFVMVSVSDP+PD + SE++A VA EE P MTLS+ALADVDIM
Sbjct: 3446 EAWPDEDSEERVAYQLLNGMRRPDGSALASVPLHAVREGAGADTHFVEAFYASDARDWLTRSRVDPAGPAAGDRVRKWESMGIVQRVTKAERGGSQIHLRGGRHHGDALLRFVDRWDVEHCGESAGAALRAGPLGRVSYQLVPGGGSAPGRGTLHGELLYAIGEEAAAELWTRLGAEDWLVRTVARAEFPFSYRHQLAELAFHRGSHVAAXXXXXXXXXXXXXXXXXXXXXXXXADLPCSLHDGNRRPERDAYCLCVFEHLCRNALFRRLRLPHRFQALVSVQLLGLKNLSPHYHPAKTDVFAAVSLKRLDMTAAGSNGNGNYA---------------AXXXXGHSGGEAAAKRRGRNTSVTAIKRLLPTANGQENQQSRWGAKAAFRFPLPEEASPFVLAYGDGAYELVMGG------------TGKG-GMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGKLDDRGDIDEWVALRGDKGSSWFVNVRFSLRFVMVSVSDPVPDQEHSEDLAAVAVEEENPGMTLSYALADVDIM 3956
BLAST of mRNA_S-firma_M_contig9421.20404.1 vs. uniprot
Match: A0A836C890_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C890_9STRA) HSP 1 Score: 134 bits (338), Expect = 4.510e-32 Identity = 95/276 (34.42%), Postives = 126/276 (45.65%), Query Frame = 1
Query: 739 DAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVSLKRLEPAAGNGRXXXXXXXXXXXXXXXXQSQSHAXXTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMGGYDGGXXXXXXXXTAAGKGMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDREDIDEWVALRGDK-------------------------GSSWFVNVRFNLRFVMVSVSDP 1491
D + C+FEHL RNAL RRLRLPHRF ALV V+L LKNLSPH+ DVFA L+R A SH T G VT R++P A +A +Q WG FR+ LPE+A P + G + VM + G G+ GPP +++AV++K L+D LG +VPL L+ +DEW L+ K GSSWF+N+R LRFV++ V++P
Sbjct: 22 DPYSSCLFEHLARNALLRRLRLPHRFLALVQVELHDLKNLSPHFQAQPMDVFAVARLQRGASAPA----------------------SHKHPTLGSA----------VTDAHRVVPCAEAKAGRQ--WGGATIFRYALPEDALPLIDVSGALSAPAVMRRHPAG---------------GAPGPPSVLQLAVFKKSLLSDDCLGGTEVPLHSLNAHTTLDEWYPLKHVKHKRWGKVGAEGGAGGTWGAGFTXGAGSSWFLNLRITLRFVVMLVAEP 248
BLAST of mRNA_S-firma_M_contig9421.20404.1 vs. uniprot
Match: A0A7S3Y602_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y602_HETAK) HSP 1 Score: 128 bits (321), Expect = 4.700e-30 Identity = 94/336 (27.98%), Postives = 144/336 (42.86%), Query Frame = 1
Query: 481 AIGEEAASGLWTRLGAEDWLVRTVARSEFPFSYRHQLAELPSPRKSDTGAAPPVVPIGLAPQTPAAAAAAAAELPCSLHDGNRPERDAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVSLKRLEPAAGNGRXXXXXXXXXXXXXXXXQSQSHAXXTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMGGYDGGXXXXXXXXTAAGKGMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDREDIDEWVALRGDKGSSWFVNVRFNLRFVMVSVSD 1488
A G W L E WL++ VA + +P + R LA P SLH D + C HL R+ LF RLR+PHR+ ALV +LL LK L+P P+K +V+A + L+R + + K R ++ +T ++++ +S+ + WG KAAFRFPLPE Y+ G Y + ++G P+ + I V+ K F+ D LG+V++PL + D +DEW+ LR +KG+SWF++V+ LRFV++S+ D
Sbjct: 3 APGRPGLRPAWAALRGESWLLQAVASAGYPTAARGDLAA-----------------------------------PGSLHG-----LDPYAACAARHLYRSLLFARLRMPHRYLALVQAELLDLKKLAPTPSPAKMEVYAVLRLQRRGSSV-------------------------------VLSNKTRTLDSVMTQPEKIV---TDSSSRSTPWGGKAAFRFPLPEA---YLRLDGPADYRQAV----------------------NRGAPKVLHICVYSKHFIMDSCLGDVEIPLTAITDNNHLDEWLPLRCEKGTSWFLHVKLRLRFVLMSIVD 239
BLAST of mRNA_S-firma_M_contig9421.20404.1 vs. uniprot
Match: B8CG37_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CG37_THAPS) HSP 1 Score: 103 bits (257), Expect = 2.850e-19 Identity = 114/461 (24.73%), Postives = 173/461 (37.53%), Query Frame = 1
Query: 85 ASVPLHAVREGSGADTHFVEAFYASDARSWLLRSRIDPAGPSAGARVRKWENMGIVQRVNKAEWAGGHIHFRGDRHNGDTLLRFVDRWDVEHCGESAGAALRAGPLGRMSYHLVPPGRSAAGRETLYGKLLHAIGEEAASGLWTRLGAEDWLVRTVARSEFPFSYRHQLAELPSPRKSDTGAAPPVVPIGLAPQTPAAAAAAAAELPCSLHDGNRPERDAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVSLKRLEPAAGNGRXXXXXXXXXXXXXXXXQSQSHAXXTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSR---------WGAKAAFRFPLPEEASPYVLAYGDGAYELVMGGYDGGXXXXXXXXTAAGKGMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDREDIDEWVALR-GDKGSSW 1437
+ V +R G ++ V F DA WL+ + A R+R E + +++ + ++ + + + + RFVD W+VE AG A LGR YH + G AA E K++ A G GLW+ + L + + S P R +L + G E + + +HL N+LFRRL+LP RF AL+ V+LL LKN++ PS T A +L RL KR+G + + R L +A QA + S+ WG+ FRFPLPE+ + ++ L +GPP C+++ V+ K+F++D LG DV L L I+EWV LR G G +W
Sbjct: 3059 SGVDFRTLRVGEPGNSVIVVLFNKQDAIKWLVANETGNDETEALERLRVMELLRVIEPITSSDLSLPK-GYAATHPSTSSQYRFVDPWEVEALESKAGETASAA-LGRGKYHTLSVGLIAAACE----KIVRASGGLHLLGLWSTMKGGISLTKALC-SAHPAWERDAGGDL------------------------------------QMKGGFLMEPSPYENSIRQHLYGNSLFRRLKLPQRFLALIQVELLDLKNVTS---PSGTSSLTAYALLRL---------------------------------------KRQGSSAPLNHKARSLDSACTQARKISKISGPNAPASWGSLVRFRFPLPEDVNCEGKSFDSDRESLF------------------------KGPPTCLQVTVYEKKFMSDVELGGADVNLESLGSGGQIEEWVPLRVGKDGITW 3410
BLAST of mRNA_S-firma_M_contig9421.20404.1 vs. uniprot
Match: A0A7S3V8S0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V8S0_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 2.470e-16 Identity = 119/472 (25.21%), Postives = 177/472 (37.50%), Query Frame = 1
Query: 85 ASVPLHAVREGSGADTHFVEAFYASDARSWLLRSRIDPAGPSAGARVRKWENMGIVQRVNKAEWAGGHIHFRGDR----HNGDTLLRFVDRWDVEHCGESAGAALRAGPLGRMSYHLVPPGRSAAGRETLYGKL--LHAIGEEAASGLWTRLGAEDWLVRTVARSEFPFSYRHQLAELPSPRKSDTGAAPPVVPIGLAPQTPAAAAAAAAELPCSLHDGNRPERDAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNL-SPHYHPSKTDVFAAVSLKRLEPAAGNGRXXXXXXXXXXXXXXXXQSQSHAXXTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMGGYDGGXXXXXXXXTAAGKGMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDREDIDEWVALRGDKGS-SWFVNVRFNLRFVMV 1476
+ V +R G + V F S A W+++S + A R+ E ++++V+ A D + + RFVD W+VE ES A LR LGR Y G A E L LH + LW L + +A S +P P + D G + +G + + +HL RNALFRRLRLP RF A + V++L LKNL SP PS T A +L RL+ A N +H T SV+ + + +G + S WG+ FRFPLPE + +++ D E + +G P ++I+ + K+F+ + LG D+ L L ++EWV LR +WFV +R LRF ++
Sbjct: 704 SGVEFRTLRVGEAGHSAVVVLFRKSQAIKWMIKSGAESDETDAVKRLDIMEKRRVIEQVDINTIAFEKHQDSDDNEFTEYKKEIRYRFVDPWEVETI-ESKDAELRGASLGRQHYVPFTIGAVARACEDSQRHLGGLHLL------SLWAIARGGVCLTKALA-SVYP------------PWERDAGG------------------------DLQVREGIVTQPTTYANSFRQHLYRNALFRRLRLPQRFLAFIQVEILDLKNLTSPGGSPSVT----AYALLRLKRDASNAPL------------------THKART-----------LDSVSTDPKKISRGSGPNAPAS-WGSVVRFRFPLPEGVNCDGVSF-DSDREALF-----------------------KGAPSVLQISAYEKKFMTNSSLGGADIHLDALSTSGQLEEWVPLRSINDEITWFVRLRLTLRFELM 1073
BLAST of mRNA_S-firma_M_contig9421.20404.1 vs. uniprot
Match: A0A7S3V901_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V901_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 2.990e-16 Identity = 119/472 (25.21%), Postives = 177/472 (37.50%), Query Frame = 1
Query: 85 ASVPLHAVREGSGADTHFVEAFYASDARSWLLRSRIDPAGPSAGARVRKWENMGIVQRVNKAEWAGGHIHFRGDR----HNGDTLLRFVDRWDVEHCGESAGAALRAGPLGRMSYHLVPPGRSAAGRETLYGKL--LHAIGEEAASGLWTRLGAEDWLVRTVARSEFPFSYRHQLAELPSPRKSDTGAAPPVVPIGLAPQTPAAAAAAAAELPCSLHDGNRPERDAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNL-SPHYHPSKTDVFAAVSLKRLEPAAGNGRXXXXXXXXXXXXXXXXQSQSHAXXTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMGGYDGGXXXXXXXXTAAGKGMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDREDIDEWVALRGDKGS-SWFVNVRFNLRFVMV 1476
+ V +R G + V F S A W+++S + A R+ E ++++V+ A D + + RFVD W+VE ES A LR LGR Y G A E L LH + LW L + +A S +P P + D G + +G + + +HL RNALFRRLRLP RF A + V++L LKNL SP PS T A +L RL+ A N +H T SV+ + + +G + S WG+ FRFPLPE + +++ D E + +G P ++I+ + K+F+ + LG D+ L L ++EWV LR +WFV +R LRF ++
Sbjct: 1675 SGVEFRTLRVGEAGHSAVVVLFRKSQAIKWMIKSGAESDETDAVKRLDIMEKRRVIEQVDINTIAFEKHQDSDDNEFTEYKKEIRYRFVDPWEVETI-ESKDAELRGASLGRQHYVPFTIGAVARACEDSQRHLGGLHLL------SLWAIARGGVCLTKALA-SVYP------------PWERDAGG------------------------DLQVREGIVTQPTTYANSFRQHLYRNALFRRLRLPQRFLAFIQVEILDLKNLTSPGGSPSVT----AYALLRLKRDASNAPL------------------THKART-----------LDSVSTDPKKISRGSGPNAPAS-WGSVVRFRFPLPEGVNCDGVSF-DSDREALF-----------------------KGAPSVLQISAYEKKFMTNSSLGGADIHLDALSTSGQLEEWVPLRSINDEITWFVRLRLTLRFELM 2044
BLAST of mRNA_S-firma_M_contig9421.20404.1 vs. uniprot
Match: A0A8J2WZR4_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZR4_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 5.100e-9 Identity = 68/262 (25.95%), Postives = 97/262 (37.02%), Query Frame = 1
Query: 769 LCRNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKT-------------DVFAAVSLKRLEPAAGNGRXXXXXXXXXXXXXXXXQSQSHAXXTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMGGYDGGXXXXXXXXTAAGKGMGSQGPPRCVRIAVWRKQFLA---------DQRLGEVDVPLGRLDDREDIDEWVALRGDKGSSWFVNVRFNLRFVMVSVSD 1488
L RNA FRR L RF A V V L L+ ++ P D FA + L+ P S T AKRRG+ + G + WGA AAFRF LP+EA P + + ++GPP + V+R++ A + LG+V+VPL L + + + +W+ L G KG WF+ VR L FV+ ++D
Sbjct: 1778 LLRNAWFRRHGLKRRFSASVRVDLEALETMAGALSPGAAEAAQAAQRAPPVDDAFAVLRLRHARPKGSQAPPPL----------------SEKLRTRDSCIAKRRGK----------VHVGGG-----ATWGAAAAFRFALPDEALPPQNSVR----------------------------LPTRGPPTVAYVCVYRREKHALAALGVPAQETYLGDVEVPLDNLTEDQPLTQWLPLNGGKGQHWFLRVRVTLAFVLCELAD 1980 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9421.20404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig9421.20404.1 >prot_S-firma_M_contig9421.20404.1 ID=prot_S-firma_M_contig9421.20404.1|Name=mRNA_S-firma_M_contig9421.20404.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=514bp MLHGMRMPDGSALASVPLHAVREGSGADTHFVEAFYASDARSWLLRSRIDback to top mRNA from alignment at S-firma_M_contig9421:47..3982- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig9421.20404.1 ID=mRNA_S-firma_M_contig9421.20404.1|Name=mRNA_S-firma_M_contig9421.20404.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3936bp|location=Sequence derived from alignment at S-firma_M_contig9421:47..3982- (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig9421:47..3982- >mRNA_S-firma_M_contig9421.20404.1 ID=mRNA_S-firma_M_contig9421.20404.1|Name=mRNA_S-firma_M_contig9421.20404.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=3084bp|location=Sequence derived from alignment at S-firma_M_contig9421:47..3982- (Sphaerotrichia firma Sfir_13m male)back to top |