mRNA_S-firma_M_contig9421.20404.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9421.20404.1
Unique NamemRNA_S-firma_M_contig9421.20404.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig9421.20404.1 vs. uniprot
Match: D7G823_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G823_ECTSI)

HSP 1 Score: 758 bits (1957), Expect = 2.630e-271
Identity = 416/533 (78.05%), Postives = 444/533 (83.30%), Query Frame = 1
Query:    1 QTWPEEDNEERVAYQMLHGMRMPDGSALASVPLHAVREGSGADTHFVEAFYASDARSWLLRSRIDPAGPSAGARVRKWENMGIVQRVNKAEWAGGHIHFRGDRHNGDTLLRFVDRWDVEHCGESAGAALRAGPLGRMSYHLVPPGRSAAGRETLYGKLLHAIGEEAASGLWTRLGAEDWLVRTVARSEFPFSYRHQLAELPSPRKSDTG-AAPPVVPIGLAPQTPAAAAAAAAELPCSLHDGNR-PERDAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVSLKRLEPAAGNGRXXXXXXXXXXXXXXXXQSQSHAXXTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMGGYDGGXXXXXXXXTAAGKGMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDREDIDEWVALRGDKGSSWFVNVRFNLRFVMVSVSDPIPDD-DSEEMAEVA--EEGPEMTLSFALADVDIM 1584
            + WP+ED+EERVAYQ+L+GMR PDGSALASVPLHAVREG+GADTHFVEAFYASDAR WL RSR+DPAGP+AG RVRKWE+MGIVQRV KAE  G  IHFRG RH+GD LLRFVDRWDVEHCGESAGAALRAGPLGR+SY LVP G SA GR TL+G+LL+AIGEEAA+ LWTRLGAEDWLVRTVAR+EFPFSYRHQLAEL S R S    AA   V                A+LPCSLHDGNR PERDA+CLCVFEHLCRNALFRRLRLPHRFQALV+VQLLGLKNLSPHYHP+KTDVFAAVSLKRL+  A  G    XXXXXXXXXXXXX           E AAKRRGRNTSVTAIKRLLPTANGQ SQQSRWGAKAAFRFPLPEEASP VLAYGDGAYELVMGG            T  G GMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLG+LDDR DIDEWVALRGDKGSSWFVNVRF+LRFVMVSVSDP+PD+ DSE++A VA  EE P MTLSFALADVDI+
Sbjct:   19 EAWPDEDSEERVAYQLLNGMRRPDGSALASVPLHAVREGAGADTHFVEAFYASDARGWLTRSRVDPAGPAAGDRVRKWESMGIVQRVTKAERGGSQIHFRGGRHHGDALLRFVDRWDVEHCGESAGAALRAGPLGRVSYQLVPGGGSAPGRGTLHGELLYAIGEEAAAELWTRLGAEDWLVRTVARAEFPFSYRHQLAELASHRGSRVAPAADTAVTSAXXXXXXXXXXXXXADLPCSLHDGNRRPERDAYCLCVFEHLCRNALFRRLRLPHRFQALVSVQLLGLKNLSPHYHPAKTDVFAAVSLKRLDMTAAGGNGNDXXXXXXXXXXXXXXX---------EAAAKRRGRNTSVTAIKRLLPTANGQESQQSRWGAKAAFRFPLPEEASPLVLAYGDGAYELVMGG------------TGKG-GMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGKLDDRGDIDEWVALRGDKGSSWFVNVRFSLRFVMVSVSDPVPDEEDSEDLAAVAVEEENPGMTLSFALADVDII 529          
BLAST of mRNA_S-firma_M_contig9421.20404.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 753 bits (1943), Expect = 1.240e-242
Identity = 401/539 (74.40%), Postives = 433/539 (80.33%), Query Frame = 1
Query:    1 QTWPEEDNEERVAYQMLHGMRMPDGSALASVPLHAVREGSGADTHFVEAFYASDARSWLLRSRIDPAGPSAGARVRKWENMGIVQRVNKAEWAGGHIHFRGDRHNGDTLLRFVDRWDVEHCGESAGAALRAGPLGRMSYHLVPPGRSAAGRETLYGKLLHAIGEEAASGLWTRLGAEDWLVRTVARSEFPFSYRHQLAELPSPRKSDTGAAPPVVPIGLAPQTPAAAAAAA---AELPCSLHDGNR-PERDAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVSLKRLEPAA----GNGRXXXXXXXXXXXXXXXXQSQSHAXXTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMGGYDGGXXXXXXXXTAAGKGMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDREDIDEWVALRGDKGSSWFVNVRFNLRFVMVSVSDPIPDDD-SEEMAEVA--EEGPEMTLSFALADVDIM 1584
            + WP+ED+EERVAYQ+L+GMR PDGSALASVPLHAVREG+GADTHFVEAFYASDAR WL RSR+DPAGP+AG RVRKWE+MGIVQRV KAE  G  IH RG RH+GD LLRFVDRWDVEHCGESAGAALRAGPLGR+SY LVP G SA GR TL+G+LL+AIGEEAA+ LWTRLGAEDWLVRTVAR+EFPFSYRHQLAEL   R S   A                        A+LPCSLHDGNR PERDA+CLCVFEHLCRNALFRRLRLPHRFQALV+VQLLGLKNLSPHYHP+KTDVFAAVSLKRL+  A    GNG                  +      +GGE AAKRRGRNTSVTAIKRLLPTANGQ +QQSRWGAKAAFRFPLPEEASP+VLAYGDGAYELVMGG            T  G GMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLG+LDDR DIDEWVALRGDKGSSWFVNVRF+LRFVMVSVSDP+PD + SE++A VA  EE P MTLS+ALADVDIM
Sbjct: 3446 EAWPDEDSEERVAYQLLNGMRRPDGSALASVPLHAVREGAGADTHFVEAFYASDARDWLTRSRVDPAGPAAGDRVRKWESMGIVQRVTKAERGGSQIHLRGGRHHGDALLRFVDRWDVEHCGESAGAALRAGPLGRVSYQLVPGGGSAPGRGTLHGELLYAIGEEAAAELWTRLGAEDWLVRTVARAEFPFSYRHQLAELAFHRGSHVAAXXXXXXXXXXXXXXXXXXXXXXXXADLPCSLHDGNRRPERDAYCLCVFEHLCRNALFRRLRLPHRFQALVSVQLLGLKNLSPHYHPAKTDVFAAVSLKRLDMTAAGSNGNGNYA---------------AXXXXGHSGGEAAAKRRGRNTSVTAIKRLLPTANGQENQQSRWGAKAAFRFPLPEEASPFVLAYGDGAYELVMGG------------TGKG-GMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGKLDDRGDIDEWVALRGDKGSSWFVNVRFSLRFVMVSVSDPVPDQEHSEDLAAVAVEEENPGMTLSYALADVDIM 3956          
BLAST of mRNA_S-firma_M_contig9421.20404.1 vs. uniprot
Match: A0A836C890_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C890_9STRA)

HSP 1 Score: 134 bits (338), Expect = 4.510e-32
Identity = 95/276 (34.42%), Postives = 126/276 (45.65%), Query Frame = 1
Query:  739 DAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVSLKRLEPAAGNGRXXXXXXXXXXXXXXXXQSQSHAXXTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMGGYDGGXXXXXXXXTAAGKGMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDREDIDEWVALRGDK-------------------------GSSWFVNVRFNLRFVMVSVSDP 1491
            D +  C+FEHL RNAL RRLRLPHRF ALV V+L  LKNLSPH+     DVFA   L+R   A                        SH   T G            VT   R++P A  +A +Q  WG    FR+ LPE+A P +   G  +   VM  +  G               G+ GPP  +++AV++K  L+D  LG  +VPL  L+    +DEW  L+  K                         GSSWF+N+R  LRFV++ V++P
Sbjct:   22 DPYSSCLFEHLARNALLRRLRLPHRFLALVQVELHDLKNLSPHFQAQPMDVFAVARLQRGASAPA----------------------SHKHPTLGSA----------VTDAHRVVPCAEAKAGRQ--WGGATIFRYALPEDALPLIDVSGALSAPAVMRRHPAG---------------GAPGPPSVLQLAVFKKSLLSDDCLGGTEVPLHSLNAHTTLDEWYPLKHVKHKRWGKVGAEGGAGGTWGAGFTXGAGSSWFLNLRITLRFVVMLVAEP 248          
BLAST of mRNA_S-firma_M_contig9421.20404.1 vs. uniprot
Match: A0A7S3Y602_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y602_HETAK)

HSP 1 Score: 128 bits (321), Expect = 4.700e-30
Identity = 94/336 (27.98%), Postives = 144/336 (42.86%), Query Frame = 1
Query:  481 AIGEEAASGLWTRLGAEDWLVRTVARSEFPFSYRHQLAELPSPRKSDTGAAPPVVPIGLAPQTPAAAAAAAAELPCSLHDGNRPERDAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVSLKRLEPAAGNGRXXXXXXXXXXXXXXXXQSQSHAXXTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMGGYDGGXXXXXXXXTAAGKGMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDREDIDEWVALRGDKGSSWFVNVRFNLRFVMVSVSD 1488
            A G       W  L  E WL++ VA + +P + R  LA                                    P SLH       D +  C   HL R+ LF RLR+PHR+ ALV  +LL LK L+P   P+K +V+A + L+R   +                                  + K R  ++ +T  ++++      +S+ + WG KAAFRFPLPE    Y+   G   Y   +                      ++G P+ + I V+ K F+ D  LG+V++PL  + D   +DEW+ LR +KG+SWF++V+  LRFV++S+ D
Sbjct:    3 APGRPGLRPAWAALRGESWLLQAVASAGYPTAARGDLAA-----------------------------------PGSLHG-----LDPYAACAARHLYRSLLFARLRMPHRYLALVQAELLDLKKLAPTPSPAKMEVYAVLRLQRRGSSV-------------------------------VLSNKTRTLDSVMTQPEKIV---TDSSSRSTPWGGKAAFRFPLPEA---YLRLDGPADYRQAV----------------------NRGAPKVLHICVYSKHFIMDSCLGDVEIPLTAITDNNHLDEWLPLRCEKGTSWFLHVKLRLRFVLMSIVD 239          
BLAST of mRNA_S-firma_M_contig9421.20404.1 vs. uniprot
Match: B8CG37_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CG37_THAPS)

HSP 1 Score: 103 bits (257), Expect = 2.850e-19
Identity = 114/461 (24.73%), Postives = 173/461 (37.53%), Query Frame = 1
Query:   85 ASVPLHAVREGSGADTHFVEAFYASDARSWLLRSRIDPAGPSAGARVRKWENMGIVQRVNKAEWAGGHIHFRGDRHNGDTLLRFVDRWDVEHCGESAGAALRAGPLGRMSYHLVPPGRSAAGRETLYGKLLHAIGEEAASGLWTRLGAEDWLVRTVARSEFPFSYRHQLAELPSPRKSDTGAAPPVVPIGLAPQTPAAAAAAAAELPCSLHDGNRPERDAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVSLKRLEPAAGNGRXXXXXXXXXXXXXXXXQSQSHAXXTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSR---------WGAKAAFRFPLPEEASPYVLAYGDGAYELVMGGYDGGXXXXXXXXTAAGKGMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDREDIDEWVALR-GDKGSSW 1437
            + V    +R G   ++  V  F   DA  WL+ +        A  R+R  E + +++ +  ++ +     +     +  +  RFVD W+VE     AG    A  LGR  YH +  G  AA  E    K++ A G     GLW+ +     L + +  S  P   R    +L                                     +  G   E   +   + +HL  N+LFRRL+LP RF AL+ V+LL LKN++    PS T    A +L RL                                       KR+G +  +    R L +A  QA + S+         WG+   FRFPLPE+ +    ++      L                         +GPP C+++ V+ K+F++D  LG  DV L  L     I+EWV LR G  G +W
Sbjct: 3059 SGVDFRTLRVGEPGNSVIVVLFNKQDAIKWLVANETGNDETEALERLRVMELLRVIEPITSSDLSLPK-GYAATHPSTSSQYRFVDPWEVEALESKAGETASAA-LGRGKYHTLSVGLIAAACE----KIVRASGGLHLLGLWSTMKGGISLTKALC-SAHPAWERDAGGDL------------------------------------QMKGGFLMEPSPYENSIRQHLYGNSLFRRLKLPQRFLALIQVELLDLKNVTS---PSGTSSLTAYALLRL---------------------------------------KRQGSSAPLNHKARSLDSACTQARKISKISGPNAPASWGSLVRFRFPLPEDVNCEGKSFDSDRESLF------------------------KGPPTCLQVTVYEKKFMSDVELGGADVNLESLGSGGQIEEWVPLRVGKDGITW 3410          
BLAST of mRNA_S-firma_M_contig9421.20404.1 vs. uniprot
Match: A0A7S3V8S0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V8S0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.470e-16
Identity = 119/472 (25.21%), Postives = 177/472 (37.50%), Query Frame = 1
Query:   85 ASVPLHAVREGSGADTHFVEAFYASDARSWLLRSRIDPAGPSAGARVRKWENMGIVQRVNKAEWAGGHIHFRGDR----HNGDTLLRFVDRWDVEHCGESAGAALRAGPLGRMSYHLVPPGRSAAGRETLYGKL--LHAIGEEAASGLWTRLGAEDWLVRTVARSEFPFSYRHQLAELPSPRKSDTGAAPPVVPIGLAPQTPAAAAAAAAELPCSLHDGNRPERDAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNL-SPHYHPSKTDVFAAVSLKRLEPAAGNGRXXXXXXXXXXXXXXXXQSQSHAXXTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMGGYDGGXXXXXXXXTAAGKGMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDREDIDEWVALRGDKGS-SWFVNVRFNLRFVMV 1476
            + V    +R G    +  V  F  S A  W+++S  +     A  R+   E   ++++V+    A        D     +  +   RFVD W+VE   ES  A LR   LGR  Y     G  A   E     L  LH +       LW        L + +A S +P            P + D G                            + +G   +   +     +HL RNALFRRLRLP RF A + V++L LKNL SP   PS T    A +L RL+  A N                     +H   T             SV+   + +   +G  +  S WG+   FRFPLPE  +   +++ D   E +                        +G P  ++I+ + K+F+ +  LG  D+ L  L     ++EWV LR      +WFV +R  LRF ++
Sbjct:  704 SGVEFRTLRVGEAGHSAVVVLFRKSQAIKWMIKSGAESDETDAVKRLDIMEKRRVIEQVDINTIAFEKHQDSDDNEFTEYKKEIRYRFVDPWEVETI-ESKDAELRGASLGRQHYVPFTIGAVARACEDSQRHLGGLHLL------SLWAIARGGVCLTKALA-SVYP------------PWERDAGG------------------------DLQVREGIVTQPTTYANSFRQHLYRNALFRRLRLPQRFLAFIQVEILDLKNLTSPGGSPSVT----AYALLRLKRDASNAPL------------------THKART-----------LDSVSTDPKKISRGSGPNAPAS-WGSVVRFRFPLPEGVNCDGVSF-DSDREALF-----------------------KGAPSVLQISAYEKKFMTNSSLGGADIHLDALSTSGQLEEWVPLRSINDEITWFVRLRLTLRFELM 1073          
BLAST of mRNA_S-firma_M_contig9421.20404.1 vs. uniprot
Match: A0A7S3V901_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V901_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.990e-16
Identity = 119/472 (25.21%), Postives = 177/472 (37.50%), Query Frame = 1
Query:   85 ASVPLHAVREGSGADTHFVEAFYASDARSWLLRSRIDPAGPSAGARVRKWENMGIVQRVNKAEWAGGHIHFRGDR----HNGDTLLRFVDRWDVEHCGESAGAALRAGPLGRMSYHLVPPGRSAAGRETLYGKL--LHAIGEEAASGLWTRLGAEDWLVRTVARSEFPFSYRHQLAELPSPRKSDTGAAPPVVPIGLAPQTPAAAAAAAAELPCSLHDGNRPERDAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNL-SPHYHPSKTDVFAAVSLKRLEPAAGNGRXXXXXXXXXXXXXXXXQSQSHAXXTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMGGYDGGXXXXXXXXTAAGKGMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDREDIDEWVALRGDKGS-SWFVNVRFNLRFVMV 1476
            + V    +R G    +  V  F  S A  W+++S  +     A  R+   E   ++++V+    A        D     +  +   RFVD W+VE   ES  A LR   LGR  Y     G  A   E     L  LH +       LW        L + +A S +P            P + D G                            + +G   +   +     +HL RNALFRRLRLP RF A + V++L LKNL SP   PS T    A +L RL+  A N                     +H   T             SV+   + +   +G  +  S WG+   FRFPLPE  +   +++ D   E +                        +G P  ++I+ + K+F+ +  LG  D+ L  L     ++EWV LR      +WFV +R  LRF ++
Sbjct: 1675 SGVEFRTLRVGEAGHSAVVVLFRKSQAIKWMIKSGAESDETDAVKRLDIMEKRRVIEQVDINTIAFEKHQDSDDNEFTEYKKEIRYRFVDPWEVETI-ESKDAELRGASLGRQHYVPFTIGAVARACEDSQRHLGGLHLL------SLWAIARGGVCLTKALA-SVYP------------PWERDAGG------------------------DLQVREGIVTQPTTYANSFRQHLYRNALFRRLRLPQRFLAFIQVEILDLKNLTSPGGSPSVT----AYALLRLKRDASNAPL------------------THKART-----------LDSVSTDPKKISRGSGPNAPAS-WGSVVRFRFPLPEGVNCDGVSF-DSDREALF-----------------------KGAPSVLQISAYEKKFMTNSSLGGADIHLDALSTSGQLEEWVPLRSINDEITWFVRLRLTLRFELM 2044          
BLAST of mRNA_S-firma_M_contig9421.20404.1 vs. uniprot
Match: A0A8J2WZR4_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZR4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.100e-9
Identity = 68/262 (25.95%), Postives = 97/262 (37.02%), Query Frame = 1
Query:  769 LCRNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKT-------------DVFAAVSLKRLEPAAGNGRXXXXXXXXXXXXXXXXQSQSHAXXTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMGGYDGGXXXXXXXXTAAGKGMGSQGPPRCVRIAVWRKQFLA---------DQRLGEVDVPLGRLDDREDIDEWVALRGDKGSSWFVNVRFNLRFVMVSVSD 1488
            L RNA FRR  L  RF A V V L  L+ ++    P                D FA + L+   P                         S    T     AKRRG+          +    G     + WGA AAFRF LP+EA P   +                              + ++GPP    + V+R++  A         +  LG+V+VPL  L + + + +W+ L G KG  WF+ VR  L FV+  ++D
Sbjct: 1778 LLRNAWFRRHGLKRRFSASVRVDLEALETMAGALSPGAAEAAQAAQRAPPVDDAFAVLRLRHARPKGSQAPPPL----------------SEKLRTRDSCIAKRRGK----------VHVGGG-----ATWGAAAAFRFALPDEALPPQNSVR----------------------------LPTRGPPTVAYVCVYRREKHALAALGVPAQETYLGDVEVPLDNLTEDQPLTQWLPLNGGKGQHWFLRVRVTLAFVLCELAD 1980          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9421.20404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G823_ECTSI2.630e-27178.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K928_9PHAE1.240e-24274.40PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836C890_9STRA4.510e-3234.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3Y602_HETAK4.700e-3027.98Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
B8CG37_THAPS2.850e-1924.73Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S3V8S0_9STRA2.470e-1625.21Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A7S3V901_9STRA2.990e-1625.21Hypothetical protein (Fragment) n=2 Tax=Chaetocero... [more]
A0A8J2WZR4_9STRA5.100e-925.95Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9421contigS-firma_M_contig9421:47..3982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue1.1e-20
Seed eggNOG ortholog2850.Phatr49814
EggNOG free text desc.RAVE protein 1 C terminal
EggNOG OGs2XA4N@2836,KOG1064@1,KOG1064@2759
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size1641
Cds size1542
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9421.20404.1prot_S-firma_M_contig9421.20404.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9421 101..3937 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828775.2477288-UTR-S-firma_M_contig9421:46..1001622828775.2477288-UTR-S-firma_M_contig9421:46..100Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9421 47..100 -
1697105155.0163417-UTR-S-firma_M_contig9421:46..1001697105155.0163417-UTR-S-firma_M_contig9421:46..100Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9421 47..100 -
1622828775.6253946-UTR-S-firma_M_contig9421:3937..39821622828775.6253946-UTR-S-firma_M_contig9421:3937..3982Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9421 3938..3982 -
1697105155.0945365-UTR-S-firma_M_contig9421:3937..39821697105155.0945365-UTR-S-firma_M_contig9421:3937..3982Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9421 3938..3982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828775.259062-CDS-S-firma_M_contig9421:100..2511622828775.259062-CDS-S-firma_M_contig9421:100..251Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9421 101..251 -
1697105155.029271-CDS-S-firma_M_contig9421:100..2511697105155.029271-CDS-S-firma_M_contig9421:100..251Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9421 101..251 -
1622828775.2693846-CDS-S-firma_M_contig9421:721..13811622828775.2693846-CDS-S-firma_M_contig9421:721..1381Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9421 722..1381 -
1697105155.042769-CDS-S-firma_M_contig9421:721..13811697105155.042769-CDS-S-firma_M_contig9421:721..1381Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9421 722..1381 -
1622828775.2813208-CDS-S-firma_M_contig9421:1981..21981622828775.2813208-CDS-S-firma_M_contig9421:1981..2198Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9421 1982..2198 -
1697105155.0539317-CDS-S-firma_M_contig9421:1981..21981697105155.0539317-CDS-S-firma_M_contig9421:1981..2198Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9421 1982..2198 -
1622828775.298667-CDS-S-firma_M_contig9421:2492..27071622828775.298667-CDS-S-firma_M_contig9421:2492..2707Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9421 2493..2707 -
1697105155.0626905-CDS-S-firma_M_contig9421:2492..27071697105155.0626905-CDS-S-firma_M_contig9421:2492..2707Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9421 2493..2707 -
1622828775.311525-CDS-S-firma_M_contig9421:3276..33531622828775.311525-CDS-S-firma_M_contig9421:3276..3353Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9421 3277..3353 -
1697105155.0713546-CDS-S-firma_M_contig9421:3276..33531697105155.0713546-CDS-S-firma_M_contig9421:3276..3353Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9421 3277..3353 -
1622828775.3237195-CDS-S-firma_M_contig9421:3715..39371622828775.3237195-CDS-S-firma_M_contig9421:3715..3937Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9421 3716..3937 -
1697105155.0832584-CDS-S-firma_M_contig9421:3715..39371697105155.0832584-CDS-S-firma_M_contig9421:3715..3937Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9421 3716..3937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9421.20404.1

>prot_S-firma_M_contig9421.20404.1 ID=prot_S-firma_M_contig9421.20404.1|Name=mRNA_S-firma_M_contig9421.20404.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=514bp
MLHGMRMPDGSALASVPLHAVREGSGADTHFVEAFYASDARSWLLRSRID
PAGPSAGARVRKWENMGIVQRVNKAEWAGGHIHFRGDRHNGDTLLRFVDR
WDVEHCGESAGAALRAGPLGRMSYHLVPPGRSAAGRETLYGKLLHAIGEE
AASGLWTRLGAEDWLVRTVARSEFPFSYRHQLAELPSPRKSDTGAAPPVV
PIGLAPQTPAAAAAAAAELPCSLHDGNRPERDAFCLCVFEHLCRNALFRR
LRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVSLKRLEPAAGNGRN
GRNGGGGGGGSNGGSQSQSHAGHTGGETAAKRRGRNTSVTAIKRLLPTAN
GQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMGGYDGGGGGGG
SGGTAAGKGMGSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDREDI
DEWVALRGDKGSSWFVNVRFNLRFVMVSVSDPIPDDDSEEMAEVAEEGPE
MTLSFALADVDIM*
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mRNA from alignment at S-firma_M_contig9421:47..3982-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9421.20404.1 ID=mRNA_S-firma_M_contig9421.20404.1|Name=mRNA_S-firma_M_contig9421.20404.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3936bp|location=Sequence derived from alignment at S-firma_M_contig9421:47..3982- (Sphaerotrichia firma Sfir_13m male)
CAGACGTGGCCGGAGGAAGACAACGAGGAGAGGGTGGCCTACCAGATGCT CCACGGCATGAGGATGCCCGACGGTTCTGCTCTCGCCAGCGTGCCGCTGC ACGCCGTGCGGGAAGGGTCCGGGGCTGACACCCACTTCGTCGAGGCGTTC TACGCCTCCGACGCCCGGAGCTGGCTGCTGCGGTCGAGGATCGACCCCGC GGGGCCGTCGGCCGGAGCCAGGGTCCGGAAGTGGGAGAACATGGGCATCG TCCAGAGGGTCAACAAGGTCAGTGCGTGCGTGCATGTTTTTTTTTTTGTT TTTTTTTTGGTCCTTCCCATTGGGGATTCTGTCGTCTGCCCCACTCGCTG GTCCGCATCCACCCGGGGTCACGCCTGTGCATGTACAATAGCTATGTCGT TCGTTTTTGTTTCGCGTTGGCGCGGTGCTGGTACGTGGGCTTGGTCGCCT CCCCCACCCCCCTGTTTAAGAACAATCCCCACGGTGCCCCCCTTCGACTT TCCCCCCTCCACGCTGAATACATCCGTCCAACGCTTGTCGCGGATGTCTG TTTGATGTTTCTGGCTGGTGGCTTCGTTGTGCGCTTTTTTTTTTCTTTTT TTTTCTGTCTGGAATCTTAATCTTTGCAGGCGGAGTGGGCGGGAGGCCAC ATCCACTTTCGGGGCGATCGGCACAACGGCGACACCCTCTTGCGGTTCGT CGACAGGTGTGTGTGTGCGAAGCCCAAGAAACAGCTGAGCAGCGAGAGCG CGTTGCCCTTTCATCCCCCTCCTTTCCCATCAGTGCATTTCCACTCCCCA CGCAAACACACGCGCACCCACCGTTCGGACGCCACAAACAAAACGCGCTG AAGTCAATCATTCGCCTTTTTTCGCGCCAACAACAAACGAAAACTACCAC TACAGTATAGGTGGGACGTATCATAAAACGCGCAAAGTCGAATCATTCGC CTTTTTTCGCGTCAACAACAAACGAAAAATACCATCATCATAGGTATATT TGTCGCTCTGCCGACCCTTGGGGTCCATTTTATTTTTTGTATACCTTTTT TTGGTATGTTAACCTGTGACCACGGAAATTGGCCGCGTCAAGTGATGGAT TCGTACGGAGAGATTGAGACAGAGGGAGGTACTGGATAGAGAGACCGGGA TGGTTTTTAATGTGAAGACAACAACAACAACAAACAACAACATAGGTGGG ATGTGAAACGCGCAAAGCCAAATCATTCGCCCTTTTTTTCGCGCCAACAA CGAACGAAAAATACCACCATCAAAGGTGGGACGTGGAGCACTGCGGCGAG TCCGCCGGAGCCGCTCTCCGCGCGGGGCCGCTGGGGCGCATGTCGTACCA CCTCGTGCCGCCGGGGAGGTCGGCGGCCGGCCGGGAGACCCTGTACGGCA AGCTGCTGCACGCCATCGGGGAGGAGGCCGCGTCCGGCCTCTGGACGCGC CTCGGGGCGGAGGACTGGCTCGTGCGCACGGTCGCCAGGTGTGTGTGTGT GTGTGTGTGTGTGTGTTTGTGTGCATGTGTGTGTTTTTCGTCCTTGACGC TGACTGACTGACAACGCCACAAGCTTTTCGCGCCTGTCGGCCGTTTCGTT TCGTTTCGTTGTTTTTTTTTTTTGGTTTGCTGCTGTCTCCAGCTATTTCA TGTGTGCAATACCGCCGTGAGCGCCCGTCCCCCAATTCGCCAACCCAGCC ACGCACCCATCCCTCACTTTCCATCCGCCGACCCCCCCCCTCCCCTCCCT GTGTTCTTGGGGTCACTTTCGCCCAAACCCAGAGCGGAGTTTCCGTTTTC CTACCGCCACCAGCTTGCCGAGTTGCCCTCCCCCCGCAAGTCGGACACGG GGGCCGCCCCCCCGGTGGTGCCCATCGGTTTGGCGCCGCAGACGCCGGCG GCGGCGGCGGCGGCGGCGGCCGAGCTGCCGTGCTCTCTCCACGACGGCAA CCGGCCGGAGCGGGACGCCTTCTGCCTCTGCGTCTTCGAGCACCTCTGCC GGTGAGTCTGTCTGGTCTCGCGTTCAGGCTTCCTCCGCGCACTTTTCCCC CCCTGCAGCAGTGACGTAATATAGCGTAGCGAGATGTTGGCGCGATGGAA TGGCATGCAAGGGTGGTGTTAGTGCGTGGCACGTGCAGACGTTCCCGCTG CACACCACCTCGCCTGCTGTAGGCTGGGCGTGCGAAGGCTGTGTGCCTTG CCTCCCGCCCCGGCGCCGCGTTTTCTTGGAAGCGACGCGCCGTGCTTGTT TTCGAGCCGTCGGCGCAGGCTGGTAGGGCTGCCACACAGAGGGAGCAAAA TCATATCATAGCTTCTTCGACCCATTGTCTTGGCGGTGATGCGGGAATAA GCTGATAAGCTCCTCTCATCACCCGACAAGAGAGCCCAAAATCCTTCTTT GTTGCGCAAAACTGGGCGGTGATGCGGGAATAAGCTGATAAGCTCCTCTC ATCACCCGACAAGAGAGCCCAAAATCCTTCTTTGTTGCGCAAAACTGGCT CTTGTCCGCTCAATCAAGGAGAAAAAAACGCCCCTCCCCTCCCCCTAACC CCAAAAGCAACCAGCATCTCTCCTCCAAAACTCCAACCCACCGTTACCCA GGAACGCCCTCTTCCGGCGACTGCGCCTGCCGCACCGGTTCCAAGCCCTG GTGACCGTCCAGCTCCTGGGGCTCAAGAACCTCAGCCCGCACTACCACCC ATCCAAGACGGACGTCTTCGCGGCGGTGAGCCTCAAGCGCCTGGAGCCCG CCGCCGGCAACGGCCGCAACGGCCGCAACGGCGGCGGCGGCGGCGGCGGC AGCAACGGCGGGAGCCAGAGCCAGAGCCACGCCGGCCACACCGGCGGCGA GACCGCCGCGAAGCGCCGCGGCCGCAACACGTCGGTGACGGCGATCAAGC GGCTGCTCCCGACCGCCAACGGGCAGGCCAGCCAGCAGAGCCGGTGGGGC GCCAAGGCGGCGTTCCGCTTCCCGCTCCCCGAGGAGGCCTCGCCGTACGT GCTCGCCTACGGGGACGGGGCGTACGAGCTTGTCATGGGCGGGTACGACG GCGGCGGCGGCGGCGGCGGCAGCGGCGGCACCGCGGCCGGGAAGGGGATG GGGAGCCAGGGGCCGCCGAGGTGCGTGCGCATCGCGGTGTGGCGGAAGCA GTTCCTGGCGGACCAGAGGCTCGGGGAGGTGGACGTCCCCCTCGGAAGGC TGGACGATCGCGAGGATATCGACGAGTGGGTGGCGCTTCGGGGCGACAAG GGGTCTTCGTGGTGAGTCGAGCGACAAGTGTGGTGGTGGTGGTGGTGGTG GTGGTTGTTGGTTTGGAGTTCTGAAAGTCGGGATGCATGGTGTGTGGTGT TGCCATTTTCTCCCCCGCCCAGCGCCCTGCCCTGGTGGCTGTCTTGCTTT GTTTAGCTCGGTTGTTTCATTCCTCCGCTTGGGGTCCTCTCCTCCTATTT GTGGTGCTGGTTTCTGGTGGTTTGTTTGTGCATTACCGACGTGGTCGTTG AGCGTGATTGTCGACTGATGCACCGCCCGGGCATGGCCGGCCCCCCGTGG CGCGCGTGGCTTGACTGCGAACGCGATGGCAACCCCGAAGATCACCGATC CTTCCTCCATGATACATGATACATGATACGTCAATTAGCGCCAACTTGCA CGGATCCTGATGACCACCGTACCCCCCCCCCCCCTTCCTCCCTTTCCTCC GGAACCGAACCGAACCGCACCGAACCTTAAGGTTCGTGAACGTCCGTTTC AACCTGCGGTTCGTGATGGTGAGCGTGTCCGACCCCATCCCCGACGACGA CTCCGAGGAGATGGCAGAGGTGGCCGAGGAAGGCCCAGAGATGACGCTGT CTTTCGCCCTCGCCGACGTCGACATCATGTAGTGCCGGGTGATGCCCTGT AGTGAGCGGCGAGGGGGGCCGCGGCGATGAAGCACT
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Coding sequence (CDS) from alignment at S-firma_M_contig9421:47..3982-

>mRNA_S-firma_M_contig9421.20404.1 ID=mRNA_S-firma_M_contig9421.20404.1|Name=mRNA_S-firma_M_contig9421.20404.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=3084bp|location=Sequence derived from alignment at S-firma_M_contig9421:47..3982- (Sphaerotrichia firma Sfir_13m male)
ATGCTCCACGGCATGAGGATGCCCGACGGTTCTGCTCTCGCCAGCGTGCC
GCTGCACGCCGTGCGGGAAGGGTCCGGGGCTGACACCCACTTCGTCGAGG
CGTTCTACGCCTCCGACGCCCGGAGCTGGCTGCTGCGGTCGAGGATCGAC
CCCGCGGGGCCGTCGGCCGGAGCCAGGGTCCGGAAGTGGGAGAACATGGG
CATCGTCCAGAGGGTCAACAAGATGCTCCACGGCATGAGGATGCCCGACG
GTTCTGCTCTCGCCAGCGTGCCGCTGCACGCCGTGCGGGAAGGGTCCGGG
GCTGACACCCACTTCGTCGAGGCGTTCTACGCCTCCGACGCCCGGAGCTG
GCTGCTGCGGTCGAGGATCGACCCCGCGGGGCCGTCGGCCGGAGCCAGGG
TCCGGAAGTGGGAGAACATGGGCATCGTCCAGAGGGTCAACAAGGCGGAG
TGGGCGGGAGGCCACATCCACTTTCGGGGCGATCGGCACAACGGCGACAC
CCTCTTGCGGTTCGTCGACAGGCGGAGTGGGCGGGAGGCCACATCCACTT
TCGGGGCGATCGGCACAACGGCGACACCCTCTTGCGGTTCGTCGACAGGT
GGGACGTGGAGCACTGCGGCGAGTCCGCCGGAGCCGCTCTCCGCGCGGGG
CCGCTGGGGCGCATGTCGTACCACCTCGTGCCGCCGGGGAGGTCGGCGGC
CGGCCGGGAGACCCTGTACGGCAAGCTGCTGCACGCCATCGGGGAGGAGG
CCGCGTCCGGCCTCTGGACGCGCCTCGGGGCGGAGGACTGGCTCGTGCGC
ACGGTCGCCAGGTGTGGGACGTGGAGCACTGCGGCGAGTCCGCCGGAGCC
GCTCTCCGCGCGGGGCCGCTGGGGCGCATGTCGTACCACCTCGTGCCGCC
GGGGAGGTCGGCGGCCGGCCGGGAGACCCTGTACGGCAAGCTGCTGCACG
CCATCGGGGAGGAGGCCGCGTCCGGCCTCTGGACGCGCCTCGGGGCGGAG
GACTGGCTCGTGCGCACGGTCGCCAGGTCGGAGTTTCCGTTTTCCTACCG
CCACCAGCTTGCCGAGTTGCCCTCCCCCCGCAAGTCGGACACGGGGGCCG
CCCCCCCGGTGGTGCCCATCGGTTTGGCGCCGCAGACGCCGGCGGCGGCG
GCGGCGGCGGCGGCCGAGCTGCCGTGCTCTCTCCACGACGGCAACCGGCC
GGAGCGGGACGCCTTCTGCCTCTGCGTCTTCGAGCACCTCTGCCGCGGAG
TTTCCGTTTTCCTACCGCCACCAGCTTGCCGAGTTGCCCTCCCCCCGCAA
GTCGGACACGGGGGCCGCCCCCCCGGTGGTGCCCATCGGTTTGGCGCCGC
AGACGCCGGCGGCGGCGGCGGCGGCGGCGGCCGAGCTGCCGTGCTCTCTC
CACGACGGCAACCGGCCGGAGCGGGACGCCTTCTGCCTCTGCGTCTTCGA
GCACCTCTGCCGGAACGCCCTCTTCCGGCGACTGCGCCTGCCGCACCGGT
TCCAAGCCCTGGTGACCGTCCAGCTCCTGGGGCTCAAGAACCTCAGCCCG
CACTACCACCCATCCAAGACGGACGTCTTCGCGGCGGTGAGCCTCAAGCG
CCTGGAGCCCGCCGCCGGCAACGGCCGCAACGGCCGCAACGGCGGCGGCG
GCGGCGGCGGCAGCAACGGCGGGAGCCAGAGCCAGAGCCACGCCGGCCAC
ACCGGCGGCGAGACCGCCGCGAAGCGCCGCGGCCGCAACACGTCGGTGAC
GGCGATCAAGCGGCTGCTCCCGACCGCCAACGGGCAGGCCAGCCAGCAGA
GCCGGTGGGGCGCCAAGGCGGCGTTCCGCTTCCCGCTCCCCGAGGAGGCC
TCGCCGTACGTGCTCGCCTACGGGGACGGGGCGTACGAGCTTGTCATGGG
CGGGTACGACGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCACCGCGGCCG
GGAAGGGGATGGGGAGCCAGGGGCCGCCGAGGTGCGTGCGCATCGCGGTG
TGGCGGAAGCAGTTCCTGGCGGACCAGAGGCTCGGGGAGGTGGACGTCCC
CCTCGGAAGGCTGGACGATCGCGAGGATATCGACGAGTGGGTGGCGCTTC
GGGGCGACAAGGGGTCTTCGTGGAACGCCCTCTTCCGGCGACTGCGCCTG
CCGCACCGGTTCCAAGCCCTGGTGACCGTCCAGCTCCTGGGGCTCAAGAA
CCTCAGCCCGCACTACCACCCATCCAAGACGGACGTCTTCGCGGCGGTGA
GCCTCAAGCGCCTGGAGCCCGCCGCCGGCAACGGCCGCAACGGCCGCAAC
GGCGGCGGCGGCGGCGGCGGCAGCAACGGCGGGAGCCAGAGCCAGAGCCA
CGCCGGCCACACCGGCGGCGAGACCGCCGCGAAGCGCCGCGGCCGCAACA
CGTCGGTGACGGCGATCAAGCGGCTGCTCCCGACCGCCAACGGGCAGGCC
AGCCAGCAGAGCCGGTGGGGCGCCAAGGCGGCGTTCCGCTTCCCGCTCCC
CGAGGAGGCCTCGCCGTACGTGCTCGCCTACGGGGACGGGGCGTACGAGC
TTGTCATGGGCGGGTACGACGGCGGCGGCGGCGGCGGCGGCAGCGGCGGC
ACCGCGGCCGGGAAGGGGATGGGGAGCCAGGGGCCGCCGAGGTGCGTGCG
CATCGCGGTGTGGCGGAAGCAGTTCCTGGCGGACCAGAGGCTCGGGGAGG
TGGACGTCCCCCTCGGAAGGCTGGACGATCGCGAGGATATCGACGAGTGG
GTGGCGCTTCGGGGCGACAAGGGGTCTTCGTGGTTCGTGAACGTCCGTTT
CAACCTGCGGTTCGTGATGGTGAGCGTGTCCGACCCCATCCCCGACGACG
ACTCCGAGGAGATGGCAGAGGTGGCCGAGGAAGGCCCAGAGATGACGCTG
TCTTTCGCCCTCGCCGACGTCGACATCATGTAGGTTCGTGAACGTCCGTT
TCAACCTGCGGTTCGTGATGGTGAGCGTGTCCGACCCCATCCCCGACGAC
GACTCCGAGGAGATGGCAGAGGTGGCCGAGGAAGGCCCAGAGATGACGCT
GTCTTTCGCCCTCGCCGACGTCGACATCATGTAG
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