mRNA_S-firma_M_contig9418.20401.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9418.20401.1
Unique NamemRNA_S-firma_M_contig9418.20401.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9418.20401.1 vs. uniprot
Match: A0A6H5L4A0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4A0_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 9.880e-5
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 2 
Query:  452 MAMA*LPAAFSF-VCTGTNPFTSICMGFGCGEFQGL 556
            ++ A +PAAF+  +  GTNPFTSICMGFGCGEFQGL
Sbjct:   67 LSTASVPAAFAEELPPGTNPFTSICMGFGCGEFQGL 102
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9418.20401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4A0_9PHAE9.880e-569.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9418contigS-firma_M_contig9418:2918..3484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size569
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828774.7221696-CDS-S-firma_M_contig9418:2917..32591622828774.7221696-CDS-S-firma_M_contig9418:2917..3259Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9418 2918..3259 +
1697105154.711361-CDS-S-firma_M_contig9418:2917..32591697105154.711361-CDS-S-firma_M_contig9418:2917..3259Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9418 2918..3259 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828774.7423472-UTR-S-firma_M_contig9418:3259..34841622828774.7423472-UTR-S-firma_M_contig9418:3259..3484Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9418 3260..3484 +
1697105154.7202654-UTR-S-firma_M_contig9418:3259..34841697105154.7202654-UTR-S-firma_M_contig9418:3259..3484Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9418 3260..3484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9418.20401.1prot_S-firma_M_contig9418.20401.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9418 2918..3259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9418.20401.1

>prot_S-firma_M_contig9418.20401.1 ID=prot_S-firma_M_contig9418.20401.1|Name=mRNA_S-firma_M_contig9418.20401.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=114bp
AVAVATSVVALGVASAPVALADELPPGAEKLEACPVQINAHVFFCAETRS
VFFSHRGVFSSVWQVSRDADTAPRAFTKQVLDKDPVNVGYKCTCVFCHCL
PMCCVDPGRKVPP*
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mRNA from alignment at S-firma_M_contig9418:2918..3484+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9418.20401.1 ID=mRNA_S-firma_M_contig9418.20401.1|Name=mRNA_S-firma_M_contig9418.20401.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=567bp|location=Sequence derived from alignment at S-firma_M_contig9418:2918..3484+ (Sphaerotrichia firma Sfir_13m male)
GCTGTTGCTGTGGCCACCTCTGTTGTCGCCCTTGGCGTCGCGTCTGCGCC
GGTAGCGCTGGCGGATGAACTCCCGCCAGGTGCAGAAAAGCTGGAAGCGT
GTCCTGTTCAAATAAATGCTCATGTTTTTTTTTGCGCAGAAACGCGGAGT
GTTTTTTTTAGCCACCGCGGAGTTTTCTCCTCTGTATGGCAAGTTTCCAG
GGATGCAGATACCGCCCCCCGTGCATTCACCAAACAAGTACTGGACAAGG
ATCCAGTAAATGTGGGTTATAAATGCACATGTGTGTTTTGTCATTGTCTA
CCTATGTGCTGTGTCGACCCTGGGCGTAAAGTACCGCCGTAGTAGTGATA
CACCGTCCGAGTTTGCAACTGAAAAACATTGGCGTGGTCGGCGGCGGATA
CATACATAGTCTATAGGTTCGGTTTCTCCGAAGTGCTTGCTGTCGATGAA
AATGGCAATGGCATGACTCCCAGCTGCTTTTTCCTTCGTGTGTACAGGGA
CTAATCCGTTCACGTCCATCTGCATGGGCTTTGGATGTGGCGAGTTCCAA
GGGCTGGTGAGAGGAAG
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Coding sequence (CDS) from alignment at S-firma_M_contig9418:2918..3484+

>mRNA_S-firma_M_contig9418.20401.1 ID=mRNA_S-firma_M_contig9418.20401.1|Name=mRNA_S-firma_M_contig9418.20401.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=684bp|location=Sequence derived from alignment at S-firma_M_contig9418:2918..3484+ (Sphaerotrichia firma Sfir_13m male)
GCTGTTGCTGTGGCCACCTCTGTTGTCGCCCTTGGCGTCGCGTCTGCGCC
GGTAGCGCTGGCGGATGAACTCCCGCCAGGTGCAGAAAAGCTGGAAGCGT
GTCCTGTTCAAATAAATGCTCATGTTTTTTTTTGCGCAGAAACGCGGAGT
GTTTTTTTTAGCCACCGCGGAGTTTTCTCCTCTGTATGGCAAGTTTCCAG
GGATGCAGATACCGCCCCCCGTGCATTCACCAAACAAGTACTGGACAAGG
ATCCAGTAAATGTGGGTTATAAATGCACATGTGTGTTTTGTCATTGTCTA
CCTATGTGCTGTGTCGACCCTGGGCGTAAAGTACCGCCGTAGGCTGTTGC
TGTGGCCACCTCTGTTGTCGCCCTTGGCGTCGCGTCTGCGCCGGTAGCGC
TGGCGGATGAACTCCCGCCAGGTGCAGAAAAGCTGGAAGCGTGTCCTGTT
CAAATAAATGCTCATGTTTTTTTTTGCGCAGAAACGCGGAGTGTTTTTTT
TAGCCACCGCGGAGTTTTCTCCTCTGTATGGCAAGTTTCCAGGGATGCAG
ATACCGCCCCCCGTGCATTCACCAAACAAGTACTGGACAAGGATCCAGTA
AATGTGGGTTATAAATGCACATGTGTGTTTTGTCATTGTCTACCTATGTG
CTGTGTCGACCCTGGGCGTAAAGTACCGCCGTAG
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