mRNA_S-firma_M_contig9400.20387.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9400.20387.1
Unique NamemRNA_S-firma_M_contig9400.20387.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9400.20387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9400contigS-firma_M_contig9400:3606..3937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size294
Cds size165
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9400.20387.1prot_S-firma_M_contig9400.20387.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9400 3735..3937 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828773.7281106-UTR-S-firma_M_contig9400:3605..37341622828773.7281106-UTR-S-firma_M_contig9400:3605..3734Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9400 3606..3734 -
1697105154.1969163-UTR-S-firma_M_contig9400:3605..37341697105154.1969163-UTR-S-firma_M_contig9400:3605..3734Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9400 3606..3734 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828773.7458904-CDS-S-firma_M_contig9400:3734..38441622828773.7458904-CDS-S-firma_M_contig9400:3734..3844Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9400 3735..3844 -
1697105154.2084672-CDS-S-firma_M_contig9400:3734..38441697105154.2084672-CDS-S-firma_M_contig9400:3734..3844Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9400 3735..3844 -
1622828773.759747-CDS-S-firma_M_contig9400:3882..39371622828773.759747-CDS-S-firma_M_contig9400:3882..3937Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9400 3883..3937 -
1697105154.217432-CDS-S-firma_M_contig9400:3882..39371697105154.217432-CDS-S-firma_M_contig9400:3882..3937Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9400 3883..3937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9400.20387.1

>prot_S-firma_M_contig9400.20387.1 ID=prot_S-firma_M_contig9400.20387.1|Name=mRNA_S-firma_M_contig9400.20387.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=55bp
IGYNAIPRNLTGFYGKSHGSAPPLYYFPAFLKYLRKQAPVGPNTIFNLYT
YTRT*
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mRNA from alignment at S-firma_M_contig9400:3606..3937-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9400.20387.1 ID=mRNA_S-firma_M_contig9400.20387.1|Name=mRNA_S-firma_M_contig9400.20387.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=332bp|location=Sequence derived from alignment at S-firma_M_contig9400:3606..3937- (Sphaerotrichia firma Sfir_13m male)
ATCGGATACAATGCAATCCCGAGAAACCTCACAGGGTTCTACGGGAAATC
CCATGGCAAATCCCATGGGAAATCCCGTGGGACATCCACTGAGGAAGCGC
TCCACCATTGTACTACTTCCCTGCCTTTTTGAAGTATTTACGAAAACAAG
CACCCGTTGGCCCGAATACGATATTTAACCTATACACGTACACGCGAACG
TGAGCAAGGAGGGCGTCACCAACACGATCGATGGCCCAACGGTCGGAAGA
GGCGTGGTCACTGTTTTGGTGCCTACAGGATACGATGCAACCCCCTAAGT
CTAATAAATAAATCGCATCCCATGGGAAATCC
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Coding sequence (CDS) from alignment at S-firma_M_contig9400:3606..3937-

>mRNA_S-firma_M_contig9400.20387.1 ID=mRNA_S-firma_M_contig9400.20387.1|Name=mRNA_S-firma_M_contig9400.20387.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=330bp|location=Sequence derived from alignment at S-firma_M_contig9400:3606..3937- (Sphaerotrichia firma Sfir_13m male)
ATCGGATACAATGCAATCCCGAGAAACCTCACAGGGTTCTACGGGAAATC
CCATGATCGGATACAATGCAATCCCGAGAAACCTCACAGGGTTCTACGGG
AAATCCCATGGAAGCGCTCCACCATTGTACTACTTCCCTGCCTTTTTGAA
GTATTTACGAAAACAAGCACCCGTTGGCCCGAATACGATATTTAACCTAT
ACACGTACACGCGAACGTGAGAAGCGCTCCACCATTGTACTACTTCCCTG
CCTTTTTGAAGTATTTACGAAAACAAGCACCCGTTGGCCCGAATACGATA
TTTAACCTATACACGTACACGCGAACGTGA
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