mRNA_S-firma_M_contig9396.20375.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9396.20375.1
Unique NamemRNA_S-firma_M_contig9396.20375.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9396.20375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9396contigS-firma_M_contig9396:2091..3875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size485
Cds size483
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9396.20375.1prot_S-firma_M_contig9396.20375.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9396 2091..3873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828771.67523-CDS-S-firma_M_contig9396:2090..22071622828771.67523-CDS-S-firma_M_contig9396:2090..2207Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9396 2091..2207 +
1697105152.7677777-CDS-S-firma_M_contig9396:2090..22071697105152.7677777-CDS-S-firma_M_contig9396:2090..2207Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9396 2091..2207 +
1622828771.6931949-CDS-S-firma_M_contig9396:3182..34341622828771.6931949-CDS-S-firma_M_contig9396:3182..3434Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9396 3183..3434 +
1697105152.7768128-CDS-S-firma_M_contig9396:3182..34341697105152.7768128-CDS-S-firma_M_contig9396:3182..3434Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9396 3183..3434 +
1622828771.7084768-CDS-S-firma_M_contig9396:3759..38731622828771.7084768-CDS-S-firma_M_contig9396:3759..3873Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9396 3760..3873 +
1697105152.7873998-CDS-S-firma_M_contig9396:3759..38731697105152.7873998-CDS-S-firma_M_contig9396:3759..3873Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9396 3760..3873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9396.20375.1

>prot_S-firma_M_contig9396.20375.1 ID=prot_S-firma_M_contig9396.20375.1|Name=mRNA_S-firma_M_contig9396.20375.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=161bp
PSAANRRRGAATGARRASARGSGRSKVSYAEEDDGDSSEVEEVAPTRGRS
ARATRGGGGGGGGRASDSFNPLDIDDDDDEEEHVEDEDDDSEFDADDSED
DGTVGRGRHGVKKTKAKTKATTKAAAPSRSSRSSRAAPAAPSRVKKRTAA
AAAVDTQQSEA
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mRNA from alignment at S-firma_M_contig9396:2091..3875+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9396.20375.1 ID=mRNA_S-firma_M_contig9396.20375.1|Name=mRNA_S-firma_M_contig9396.20375.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1785bp|location=Sequence derived from alignment at S-firma_M_contig9396:2091..3875+ (Sphaerotrichia firma Sfir_13m male)
CCCTCGGCAGCAAACCGGCGTCGGGGAGCGGCGACGGGAGCTAGGAGGGC
GAGCGCACGGGGCTCGGGGCGGTCGAAGGTTAGCTACGCCGAGGAGGACG
ATGGCGACAGCAGCGAGGTGAGACGAAAAGCAGAAAATACGAGCGCGGAG
TCGCCTGCCTGAGCTGACCAGGATTCGTGCTGAAATGTATTTACATGCTT
GCAGGGTGGTGGAGCGAGAGGCAGGGCGGCGGGAGTTGGGGGCTGACGGT
GGTTTGTTTTTTTGTTTGCGGTGGCTGTGAGCGGCGATCTGAGCGTCCCG
GTGTCCGGTTGGTGGACGAAGTCTAGGGGGTTTTCCGATTGCGGTTGGCG
TTAAGGGCAAGAGTTCGGGTGAGGGCCAGAGAGCAACGGTGGTGACATCT
GCGAGGAGAGAGTCAGAGTAAGGGCGATGGAGATCGGGGGGGGCGGGGGT
GCGGTGCGGTGCTTGTTTCGGTGCCTGTTGGCGGTGGTTTGGGTCGTCGT
GAACGTTCCAACGACCGGTAGGTAGGGGCAGCAGTGCGCGGGGTAGGGTC
TGCGTGAAGCGACGGTTTTGTCCGGGTTCGGGTGTTTGAGAGCGGGAGAT
ACGTGGGCCAACGCTCGATTCCTTCGTGCAGCAGGGCGCTGGAAAGCCTC
AGGGCAAGGTCGTGCTGAGAGACAGTGCCAGCATGCCTACCTTCGTGCCT
CCGCGACGGGAGAATGAACAGACGGTGGGAGGGAGCTCACGGTGCGCACG
TTGTTTGGTTTGGCGGTTGTTAGCCCGAACGAACACCGCGTTCGTGAGAA
TGGTTTCGGTGGTCGGAAGGAGGGAGCTCATCGTGAACCGAGATCATGTT
GGCCCCATCAACAACGAAACCGCAGCCCAAAGCACCCCGCTTGCAGGCAG
GCAAGGAGGGAGCAAGCTTAATGTCAGAAACATTGCGTCTCTCGTCCTTT
ATCCGATCCAACTGCGCAAGAGAAAAGAAGCAGCAACCAAGCATCCATGA
GAATGTGCGTGAGAAGGTGGAAGTTGTCCGACCCAAACGATTGTAAGAAC
ACAACCCGAACATGTACATGCTTGCGCGTCTTGCATGGGAAGGTGGAAGA
GGTGGCGCCGACGCGCGGAAGGAGCGCCAGAGCGACGAGGGGCGGCGGCG
GCGGCGGCGGCGGCAGGGCTAGCGACAGCTTCAACCCCTTAGACATCGAC
GACGACGACGACGAAGAAGAGCACGTGGAGGACGAAGACGACGACTCCGA
GTTCGACGCAGACGACAGCGAAGACGACGGGACTGTCGGGAGGGGGCGCC
ATGGTGTCAAGAAGACCAAGGCGAAGACCAAGGCTACGACCAAGGTGCTC
TTGGGCGATGGTGTAGGTTTTTATGGAAGGGGTAGGAGTTGAGCCTGATG
GGTGGCGGACTCTGCGGTGTGTTCTTTGGGGGGGGGGGTTGAGCCCTTGG
GTGATGGTGGTAGTTCTGGGTGTGTTCATCAACATCTATCCACACCGACC
CCACCTACAGACGTCGCGCCGGTTTCCTCTGCTGTGGATCGTATTCCCGC
GAGCTGACAACCCCAACGCATCTATCGTATTCCCATGAGCTGACAACCCC
AACGCATCTATCGTGTTTCCATGAGCTGACAACCCCAACGCATCTCTCGC
CCTGTTTTTACCCTTCCAGGCCGCGGCTCCTTCTAGATCCAGCAGGTCGT
CCAGAGCAGCCCCGGCGGCCCCGTCGCGCGTCAAGAAGCGCACCGCCGCT
GCAGCCGCCGTGGACACCCAGCAGTCCGAGGCGTC
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Coding sequence (CDS) from alignment at S-firma_M_contig9396:2091..3875+

>mRNA_S-firma_M_contig9396.20375.1 ID=mRNA_S-firma_M_contig9396.20375.1|Name=mRNA_S-firma_M_contig9396.20375.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=966bp|location=Sequence derived from alignment at S-firma_M_contig9396:2091..3875+ (Sphaerotrichia firma Sfir_13m male)
CCCTCGGCAGCAAACCGGCGTCGGGGAGCGGCGACGGGAGCTAGGAGGGC
GAGCGCACGGGGCTCGGGGCGGTCGAAGGTTAGCTACGCCGAGGAGGACG
ATGGCGACAGCAGCGAGCCCTCGGCAGCAAACCGGCGTCGGGGAGCGGCG
ACGGGAGCTAGGAGGGCGAGCGCACGGGGCTCGGGGCGGTCGAAGGTTAG
CTACGCCGAGGAGGACGATGGCGACAGCAGCGAGGTGGAAGAGGTGGCGC
CGACGCGCGGAAGGAGCGCCAGAGCGACGAGGGGCGGCGGCGGCGGCGGC
GGCGGCAGGGCTAGCGACAGCTTCAACCCCTTAGACATCGACGACGACGA
CGACGAAGAAGAGCACGTGGAGGACGAAGACGACGACTCCGAGTTCGACG
CAGACGACAGCGAAGACGACGGGACTGTCGGGAGGGGGCGCCATGGTGTC
AAGAAGACCAAGGCGAAGACCAAGGCTACGACCAAGGTGGAAGAGGTGGC
GCCGACGCGCGGAAGGAGCGCCAGAGCGACGAGGGGCGGCGGCGGCGGCG
GCGGCGGCAGGGCTAGCGACAGCTTCAACCCCTTAGACATCGACGACGAC
GACGACGAAGAAGAGCACGTGGAGGACGAAGACGACGACTCCGAGTTCGA
CGCAGACGACAGCGAAGACGACGGGACTGTCGGGAGGGGGCGCCATGGTG
TCAAGAAGACCAAGGCGAAGACCAAGGCTACGACCAAGGCCGCGGCTCCT
TCTAGATCCAGCAGGTCGTCCAGAGCAGCCCCGGCGGCCCCGTCGCGCGT
CAAGAAGCGCACCGCCGCTGCAGCCGCCGTGGACACCCAGCAGTCCGAGG
CGGCCGCGGCTCCTTCTAGATCCAGCAGGTCGTCCAGAGCAGCCCCGGCG
GCCCCGTCGCGCGTCAAGAAGCGCACCGCCGCTGCAGCCGCCGTGGACAC
CCAGCAGTCCGAGGCG
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