mRNA_S-firma_M_contig939.20368.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig939.20368.1
Unique NamemRNA_S-firma_M_contig939.20368.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig939.20368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig939contigS-firma_M_contig939:24528..24851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size324
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828770.464798-UTR-S-firma_M_contig939:24527..245301622828770.464798-UTR-S-firma_M_contig939:24527..24530Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig939 24528..24530 +
1697105152.021775-UTR-S-firma_M_contig939:24527..245301697105152.021775-UTR-S-firma_M_contig939:24527..24530Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig939 24528..24530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828770.47954-CDS-S-firma_M_contig939:24530..248511622828770.47954-CDS-S-firma_M_contig939:24530..24851Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig939 24531..24851 +
1697105152.0318403-CDS-S-firma_M_contig939:24530..248511697105152.0318403-CDS-S-firma_M_contig939:24530..24851Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig939 24531..24851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig939.20368.1prot_S-firma_M_contig939.20368.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig939 24531..24851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig939.20368.1

>prot_S-firma_M_contig939.20368.1 ID=prot_S-firma_M_contig939.20368.1|Name=mRNA_S-firma_M_contig939.20368.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=107bp
MSSVARRCLKKRPLVYAVLYTHHRPWWPWDGGFRASKQSRYSVGNAKGYD
GLRPPSTRSCLPSSEQLSVTATLSTNTHSRRTHRMYSPRMYVCMYVRTST
TSSSSPT
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mRNA from alignment at S-firma_M_contig939:24528..24851+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig939.20368.1 ID=mRNA_S-firma_M_contig939.20368.1|Name=mRNA_S-firma_M_contig939.20368.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=324bp|location=Sequence derived from alignment at S-firma_M_contig939:24528..24851+ (Sphaerotrichia firma Sfir_13m male)
GGAATGAGTTCCGTCGCAAGACGGTGCTTGAAGAAACGCCCTCTAGTGTA
TGCGGTTCTGTACACGCACCATAGACCTTGGTGGCCGTGGGATGGGGGGT
TCAGGGCATCCAAACAAAGCCGATACAGCGTTGGTAACGCAAAAGGATAT
GACGGCCTTCGTCCCCCCAGCACCCGGAGTTGTCTACCCTCCTCCGAGCA
GTTGTCGGTCACAGCAACACTCAGCACAAACACACACTCAAGAAGAACCC
ATCGCATGTATTCGCCACGTATGTACGTATGCATGTATGTACGTACCTCG
ACCACATCCTCGTCCTCGCCGACA
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Coding sequence (CDS) from alignment at S-firma_M_contig939:24528..24851+

>mRNA_S-firma_M_contig939.20368.1 ID=mRNA_S-firma_M_contig939.20368.1|Name=mRNA_S-firma_M_contig939.20368.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=642bp|location=Sequence derived from alignment at S-firma_M_contig939:24528..24851+ (Sphaerotrichia firma Sfir_13m male)
ATGAGTTCCGTCGCAAGACGGTGCTTGAAGAAACGCCCTCTAGTGTATGC
GGTTCTGTACACGCACCATAGACCTTGGTGGCCGTGGGATGGGGGGTTCA
GGGCATCCAAACAAAGCCGATACAGCGTTGGTAACGCAAAAGGATATGAC
GGCCTTCGTCCCCCCAGCACCCGGAGTTGTCTACCCTCCTCCGAGCAGTT
GTCGGTCACAGCAACACTCAGCACAAACACACACTCAAGAAGAACCCATC
GCATGTATTCGCCACGTATGTACGTATGCATGTATGTACGTACCTCGACC
ACATCCTCGTCCTCGCCGACAATGAGTTCCGTCGCAAGACGGTGCTTGAA
GAAACGCCCTCTAGTGTATGCGGTTCTGTACACGCACCATAGACCTTGGT
GGCCGTGGGATGGGGGGTTCAGGGCATCCAAACAAAGCCGATACAGCGTT
GGTAACGCAAAAGGATATGACGGCCTTCGTCCCCCCAGCACCCGGAGTTG
TCTACCCTCCTCCGAGCAGTTGTCGGTCACAGCAACACTCAGCACAAACA
CACACTCAAGAAGAACCCATCGCATGTATTCGCCACGTATGTACGTATGC
ATGTATGTACGTACCTCGACCACATCCTCGTCCTCGCCGACA
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