mRNA_S-firma_M_contig9387.20360.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9387.20360.1
Unique NamemRNA_S-firma_M_contig9387.20360.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9387.20360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9387contigS-firma_M_contig9387:2980..3801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size822
Cds size150
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9387.20360.1prot_S-firma_M_contig9387.20360.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9387 3031..3180 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828770.0984464-UTR-S-firma_M_contig9387:2979..30301622828770.0984464-UTR-S-firma_M_contig9387:2979..3030Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9387 2980..3030 +
1697105151.8077257-UTR-S-firma_M_contig9387:2979..30301697105151.8077257-UTR-S-firma_M_contig9387:2979..3030Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9387 2980..3030 +
1622828770.129576-UTR-S-firma_M_contig9387:3180..38011622828770.129576-UTR-S-firma_M_contig9387:3180..3801Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9387 3181..3801 +
1697105151.8280299-UTR-S-firma_M_contig9387:3180..38011697105151.8280299-UTR-S-firma_M_contig9387:3180..3801Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9387 3181..3801 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828770.1168933-CDS-S-firma_M_contig9387:3030..31801622828770.1168933-CDS-S-firma_M_contig9387:3030..3180Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9387 3031..3180 +
1697105151.817642-CDS-S-firma_M_contig9387:3030..31801697105151.817642-CDS-S-firma_M_contig9387:3030..3180Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9387 3031..3180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9387.20360.1

>prot_S-firma_M_contig9387.20360.1 ID=prot_S-firma_M_contig9387.20360.1|Name=mRNA_S-firma_M_contig9387.20360.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=50bp
MGHFVTVVRQTAQPGSMWWLCNDGKVSTVSWTEVTMNAVAVLYRRVPVS*
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mRNA from alignment at S-firma_M_contig9387:2980..3801+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9387.20360.1 ID=mRNA_S-firma_M_contig9387.20360.1|Name=mRNA_S-firma_M_contig9387.20360.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=822bp|location=Sequence derived from alignment at S-firma_M_contig9387:2980..3801+ (Sphaerotrichia firma Sfir_13m male)
CGAACCTCGTACACGGCCCACGCGGTCATCCAGCACCTCGGGGTTGACAA
CATGGGCCACTTCGTGACCGTTGTGAGACAGACGGCACAGCCTGGGTCCA
TGTGGTGGCTCTGCAACGATGGGAAAGTCTCGACCGTATCGTGGACCGAG
GTCACGATGAACGCGGTTGCGGTTCTCTACCGACGGGTGCCGGTTTCCTA
AGCTGACAAGGCGACGGGGCGGGCTTTCGATCAAGGAGCGGTGCCGAGAT
GGTCCCTGTTGTTGTACACGAAGCAGCCCATGCATCACACACGAAGCGTG
AAGTGTCCTACCGCTACGAGATTCCCCAGGGGTGCCAGCAATTTGGTTCA
GGGTTTATCGATGCGGATAGATGACGTTCTGGGAGCTTCAACGTTATCCG
ATGGATCTCGCGCTCGCAGTTGACTTTGGTCGCGCTGTTCCCGTTGTAGC
ATACAGGCATTGACACGTCGTGGGATCTTGCCGTGGAGCATGACGTTTGG
GTGGTTGTGTTGGTTCTTTCTCTCGTGAGTGGTTGGGAGTGCTGCTTGAA
CTCTACGCATCTCAATCTGAGATGCAGTGTCCTTTGTTCGGATCTAGGTA
CACGTAGTTCGGAGCGTTGGCGGCATAGATTCAATCAGTTTGTCTCCAGG
CGAAAGGAGAGAGGGTACATCACGATTTGTACCGGGTCGGCAATTTTCTC
TGAGTTTCTCTCCGTTCCGCTGTCGCACCATTTCAACACCCACCTAGGAG
AGGCCTCGATAGTCTCTTAATGCTCTGGTTTTCTTTGGGGTGTTTGTCTC
CTGTCTGGTATGATGATGGCAC
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Coding sequence (CDS) from alignment at S-firma_M_contig9387:2980..3801+

>mRNA_S-firma_M_contig9387.20360.1 ID=mRNA_S-firma_M_contig9387.20360.1|Name=mRNA_S-firma_M_contig9387.20360.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=300bp|location=Sequence derived from alignment at S-firma_M_contig9387:2980..3801+ (Sphaerotrichia firma Sfir_13m male)
ATGGGCCACTTCGTGACCGTTGTGAGACAGACGGCACAGCCTGGGTCCAT
GTGGTGGCTCTGCAACGATGGGAAAGTCTCGACCGTATCGTGGACCGAGG
TCACGATGAACGCGGTTGCGGTTCTCTACCGACGGGTGCCGGTTTCCTAA
ATGGGCCACTTCGTGACCGTTGTGAGACAGACGGCACAGCCTGGGTCCAT
GTGGTGGCTCTGCAACGATGGGAAAGTCTCGACCGTATCGTGGACCGAGG
TCACGATGAACGCGGTTGCGGTTCTCTACCGACGGGTGCCGGTTTCCTAA
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