mRNA_S-firma_M_contig938.20353.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig938.20353.1
Unique NamemRNA_S-firma_M_contig938.20353.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig938.20353.1 vs. uniprot
Match: D7G503_ECTSI (Protein-ribulosamine 3-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G503_ECTSI)

HSP 1 Score: 278 bits (710), Expect = 7.630e-90
Identity = 132/207 (63.77%), Postives = 160/207 (77.29%), Query Frame = 1
Query:  493 MTTMTLDEERKFGTKLARMHMHRGSDHFGFPLNTWLETSLQINDWSDDWCEFFSKHRLGHQAQRILEKYEDDKLAAKVEMLRVGLRERFFKGVDIKPSLLHGNLGSQNWGADTTGRAVVCDPACYFGHSEMELAMLTLFGSPCKAGFFVMYHELLPRKEPGYENRMFLYKLHHYLNLYLQFGRGFRGTCMALLNLLLGPSVRGGSSA 1113
            M TM+ +E+RKFG KLARM       +FG+  NTW   SLQINDW DDWC  FSKHRLG QA+ ILEK+ D ++A KVE LR+ LRERFFK + I PSLLHGNL S+NWG D +G+ V+ DPA YFGH EME++MLT+FGSPCK GFFV YH+LLPR+EPGY++R+ LY+L+HYLNLYLQ GR FR  CMAL+  LL PS+  GSS+
Sbjct:    1 METMSTEEQRKFGEKLARMQRTFICPNFGYFRNTWCGESLQINDWEDDWCNLFSKHRLGQQAEMILEKHRDHEVATKVEKLRMNLRERFFKDLKITPSLLHGNLWSRNWGVDHSGKPVIYDPAVYFGHYEMEMSMLTMFGSPCK-GFFVKYHDLLPREEPGYQDRILLYQLYHYLNLYLQHGRDFRSPCMALVKTLLAPSIPSGSSS 206          
BLAST of mRNA_S-firma_M_contig938.20353.1 vs. uniprot
Match: A0A6H5L5M7_9PHAE (Protein-ribulosamine 3-kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M7_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 5.090e-58
Identity = 122/266 (45.86%), Postives = 161/266 (60.53%), Query Frame = 1
Query:  400 RRTRSVRVPKVIAVTTLPCGPAAALILEYVEMTTMTLDEERKFGT--KLARMHMHRGSDHFGFPLNTWLETSLQINDWSDDWCEFFSKHRLGHQAQRILEKYEDDKLAAKVEMLRV----------------GLR----------ERFFKGVDIKPSLLHGNLGSQNWGADTTGRAVVCDPACYFGHSEMELAMLTLFGSPCKAGFFVMYHELLPRKEPGYENRMFLYKLHHYLNLYLQFGRGFRGTCMALLNLLLGPSVRGGSSA 1113
            R TR+VRVP+VIA+ TLP    AALILEYV+M TM+ +E+RK G   +LA           G  L+ +   S Q+    D+ C     H + H  +R+     D +L  ++  L +                G R          E   + ++I PSLLHGNL S+NWG D +G+ V+ DPA YFGH EME++MLT+FGSPCK GFFV YH+LLPR+EPGY++R+ LY+L+HYLNLYLQ GRGFR  CMAL+  LL PS+  GSS+
Sbjct:   16 RLTRTVRVPRVIALATLPERRGAALILEYVKMETMSTEEQRKVGCGEELAMS----APQELG-ALSPYGARSCQL---VDEPC-----HPVKHLVRRVA---ADQRLGRRLVQLLIQAQAGPTGRDDPGEARGSRGSHQGVETQGEPSREDLEITPSLLHGNLWSRNWGVDYSGKPVIYDPAVYFGHYEMEMSMLTMFGSPCK-GFFVRYHDLLPREEPGYQDRIMLYQLYHYLNLYLQHGRGFRSPCMALVKTLLAPSIPSGSSS 264          
BLAST of mRNA_S-firma_M_contig938.20353.1 vs. uniprot
Match: UPI000E7038B4 (protein-ribulosamine 3-kinase, chloroplastic-like n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E7038B4)

HSP 1 Score: 174 bits (442), Expect = 6.130e-48
Identity = 105/264 (39.77%), Postives = 154/264 (58.33%), Query Frame = 1
Query:  292 AFKAETKDGQFFFVKLDTTGDARAKLDGEVQGLHFMRRTRSVRVPKVIAVTTLPCGPAAALILEYVEMTTMTLDEERKFGTKLARMHMHRGSDH-FGFPLNTWLETSLQINDWSDDWCEFFSKHRLGHQAQRILEKYEDDKLAAKVEMLRVGLRERFFKGVDIKPSLLHGNLGSQNWGADTTGRAVVCDPACYFGHSEMELAMLTL--FGSPCKAGFFVMYHELLPRKEPGYENRMFLYKLHHYLNLYLQFGRGFRGTCMALLN 1074
            A++ +T  G FF       G +    +GE  GL  M  T+SVRVPK++ V +LP G  + +I+EY+E  +   D+    G KLA MH    S+  FGF ++  + ++ QIN W+ DW +FF++HRLG+Q Q   E++ D  +  K + L V    R F+ V I+P LLHG+L S N  +D  G  V+ DPACY+GH+E E  M     FG P    F+  Y E++P K+ G+E R  LY L+HYLN Y  FG G+R + M++++
Sbjct:   76 AYRYDTDAGSFFVKTNRRIGVS--MFEGEALGLTAMYDTKSVRVPKLLKVGSLPSG-GSFIIMEYIEFGSSRGDQS-VLGKKLAEMHKAGKSNKGFGFDVDNTIGSTPQINTWTSDWVDFFAEHRLGYQLQLAREEHGDSAIYEKGQRL-VKSMGRLFENVTIEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGGP----FYSSYFEVMP-KQQGFERRRDLYMLYHYLNHYNLFGSGYRSSAMSIID 329          
BLAST of mRNA_S-firma_M_contig938.20353.1 vs. uniprot
Match: A0A1Y1ICK8_KLENI (Protein-ribulosamine 3-kinase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ICK8_KLENI)

HSP 1 Score: 174 bits (441), Expect = 3.510e-47
Identity = 102/264 (38.64%), Postives = 152/264 (57.58%), Query Frame = 1
Query:  292 AFKAETKDGQFFFVKLDTTGDARAKLDGEVQGLHFMRRTRSVRVPKVIAVTTLPCGPAAALILEYVEMTTMTLDEERKFGTKLARMHMHRG--SDH-FGFPLNTWLETSLQINDWSDDWCEFFSKHRLGHQAQRILEKYEDDKLAAKVEMLRVGLRERFFKGVDIKPSLLHGNLGSQNWGADTTGRAVVCDPACYFGHSEMELAMLTLFGSPCKAGFFVMYHELLPRKEPGYENRMFLYKLHHYLNLYLQFGRGFRGTCMALLN 1074
            A+K +T  G FF     +TG A    + E  GL  M  T+++RVPK + V TLP G  + +I+E++E  + +   +   G  L  MH      S H FGF ++  + ++ Q N W+ DW +FF +HRLG Q      +Y ++ L  K + L   L E    GV++ P LLHG+L S N  +D  GR V+ DPACY+GHSE E  M    G    + F+  YH+++P K+PG+E R+ +YKL+HYLN    FG G+RG+CM++++
Sbjct:  138 AYKYDTDAGPFFVKSNRSTGPA--MFEAEAAGLEKMWETKTIRVPKPLKVGTLP-GGGSFIIMEFIEFGSRS--SQADLGRALGEMHKASTGQSPHGFGFFMDNTIGSTHQPNTWTSDWVDFFREHRLGFQLDLARRQYAENTLYEKGQKLLAKLPE-LLGGVEVAPVLLHGDLWSGNVASDKDGRPVILDPACYYGHSEAEFGMSWCAGF--NSSFYEAYHKVIP-KQPGFERRVEIYKLYHYLNHLNLFGSGYRGSCMSIID 392          
BLAST of mRNA_S-firma_M_contig938.20353.1 vs. uniprot
Match: B4FVQ9_MAIZE (Protein-ribulosamine 3-kinase, chloroplastic n=15 Tax=Panicoideae TaxID=147369 RepID=B4FVQ9_MAIZE)

HSP 1 Score: 172 bits (437), Expect = 3.790e-47
Identity = 102/263 (38.78%), Postives = 148/263 (56.27%), Query Frame = 1
Query:  286 HKAFKAETKDGQFFFVKLDTTGDARAKLDGEVQGLHFMRRTRSVRVPKVIAVTTLPCGPAAALILEYVEMTTMTLDEERKFGTKLARMHMHRGSDH-FGFPLNTWLETSLQINDWSDDWCEFFSKHRLGHQAQRILEKYEDDKLAAKVEMLRVGLRERFFKGVDIKPSLLHGNLGSQNWGADTTGRAVVCDPACYFGHSEMELAMLTLFGSPCKAGFFVMYHELLPRKEPGYENRMFLYKLHHYLNLYLQFGRGFRGTCMALL 1071
            + A + +T  G FF       G      +GE  GL  M  T+S+RVP    V +LP G  + +I+E++E      D+    G KLA MH    SD  +GFP++  + ++ QIN W+DDW EF+SKHRLG+Q +    +Y D  +  K + L   +R   F G  I+P LLHG+L S N  +D+ G  V+ DPACY+GH+E E  M    G      F+  Y +++P K+PG+E R  LY L+HYLN Y  FG G+R + M+++
Sbjct:   79 NSAQRYDTDAGPFFVKTNSRIGPE--MFEGEALGLKAMYDTKSIRVPLPYKVGSLPTG-GSFIIMEFIEFGRSRGDQS-DLGRKLAEMHKAAKSDKGYGFPVDNTIGSTPQINTWTDDWIEFYSKHRLGYQLELASRRYGDSAILEKGQRLIKNIRP-LFDGAVIEPCLLHGDLWSGNISSDSNGDPVILDPACYYGHNEAEFGMSWCAGFG--GDFYNAYFQVMP-KQPGFEKRRDLYLLYHYLNHYNLFGSGYRSSAMSII 333          
BLAST of mRNA_S-firma_M_contig938.20353.1 vs. uniprot
Match: UPI000C03D473 (ketosamine-3-kinase-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C03D473)

HSP 1 Score: 171 bits (434), Expect = 5.530e-47
Identity = 114/308 (37.01%), Postives = 165/308 (53.57%), Query Frame = 1
Query:  259 KPIGCEEPQHKAFKAE--TKDGQFF-------FVKLDTTGDARAKLDGEVQGLHFMRRTRSVRVPKVIAVTTLPCGPAAALILEYVEMTTMTLDEERKFGTKLARMHMHR--------------GSDH-------FGFPLNTWLETSLQINDWSDDWCEFFSKHRLGHQAQRILEKYEDDKLAAKVEMLRVGLRERFFKGVDIKPSLLHGNLGSQNWGADTTGRAVVCDPACYFGHSEMELAMLTLFGSPCKAGFFVMYHELLPRKEPGYENRMFLYKLHHYLNLYLQFGRGFRGTCMALLNLLLGPS 1092
            K + CE+ +   F +     +GQ F       FVKL+T   AR   DGE Q L  + RT ++RVPK I V   P G  A L+ EY+EM ++  + +   GT LAR+H+                G  H       FGFP  T      Q N+W DDW  F+++ RL  Q   I ++Y D +  +    L++ + E +F G+DIKPSLLHG+L S N  A+T    V  DPA ++GH E +LA+  +FG   KA F+  YH+L+P KE G+E R  LY L H+LN +  FG  ++ + +++++ LLG S
Sbjct:   15 KELKCEKCESLGFASGGCISEGQSFDIDNGKIFVKLNTKSQAREMFDGEFQSLEEIYRTDTLRVPKPIKVLPHPAGSGAVLVAEYLEMKSLR-NYQSHLGTDLARLHLDNINKLEKETSGESKIGESHNPTTVKKFGFPCTTSCGYIGQNNEWHDDWTSFYTRSRLQCQMDLIDKQYGDTETRSLWTRLKLKIPE-YFNGMDIKPSLLHGDLWSGNV-AETEDGPVAFDPASFYGHHEFDLAIAGMFGGFTKA-FYDAYHKLIP-KEKGFEQRHQLYVLFHHLNHWNHFGTSYKSSSLSIMHGLLGKS 317          
BLAST of mRNA_S-firma_M_contig938.20353.1 vs. uniprot
Match: D8SZT1_SELML (Protein-ribulosamine 3-kinase, chloroplastic n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SZT1_SELML)

HSP 1 Score: 169 bits (429), Expect = 1.930e-46
Identity = 95/255 (37.25%), Postives = 146/255 (57.25%), Query Frame = 1
Query:  313 DGQFFFVKLDTTGDARAKLDGEVQGLHFMRRTRSVRVPKVIAVTTLPCGPAAALILEYVEMTTMTLDEERKFGTKLARMHMHRGSDH-FGFPLNTWLETSLQINDWSDDWCEFFSKHRLGHQAQRILEKYEDDKLAAKVEMLRVGLRERFFKGVDIKPSLLHGNLGSQNWGADTTGRAVVCDPACYFGHSEMELAMLTLFGSPCKAGFFVMYHELLPRKEPGYENRMFLYKLHHYLNLYLQFGRGFRGTCMALLN 1074
            D   FFVK +   D+ +  + E  GL  M RT +VRVPK +   +LP G  + +I+EY+E    TL  +R+ G  L +MH    SD  FGF ++  + ++ Q N W+ DW  FF  HR+GHQ + +L  Y D ++  K + L   +        D++P LLHG+L S N   D  G+ V+ DPACY+GH+E E  M   + +   + F+  Y + +P K+ G+E+R+ LYKL+HYLN Y  FG  +R  C+++++
Sbjct:   45 DAGSFFVKTNRGIDS-SMFEAEAAGLDAMYRTNTVRVPKPLKAGSLPRG-GSFIIMEYIEFGGSTLHGQRELGRMLGKMHKAGISDRGFGFEMDNTIGSTPQPNPWTPDWITFFRDHRIGHQLELLLTNYSDQQIYEKGKKLLEKIPYLLRDLKDVQPCLLHGDLWSGNMAYDKDGKPVILDPACYYGHNEAEFGMS--WCASFNSSFYDAYFKEMP-KQKGFEDRLHLYKLYHYLNHYNLFGSSYRTQCISIIS 294          
BLAST of mRNA_S-firma_M_contig938.20353.1 vs. uniprot
Match: A0A6M1ZXQ1_9BACT (Uncharacterized protein n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1ZXQ1_9BACT)

HSP 1 Score: 169 bits (427), Expect = 2.680e-46
Identity = 94/249 (37.75%), Postives = 142/249 (57.03%), Query Frame = 1
Query:  325 FFVKLDTTGDARAKLDGEVQGLHFMRRTRSVRVPKVIAVTTLPCGPAAALILEYVEMTTMTLDEERKFGTKLARMHMHRGSDHFGFPLNTWLETSLQINDWSDDWCEFFSKHRLGHQAQRILEKYEDDKLAAKVEMLRVGLRERFFKGVDIKPSLLHGNLGSQNWGADTTGRAVVCDPACYFGHSEMELAMLTLFGSPCKAGFFVMYHELLPRKEPGYENRMFLYKLHHYLNLYLQFGRGFRGTCMALL 1071
            FFVK+  + D  + L+ E +GL  M +T++VRVP   +  +      A LI+E++++ + T       G  LA+MH+H G + +G   +  +  + Q+N W+  W EF+  +RL  Q + I EKY D  L    E L     +  F G+++KPSLLHG+L   N  A   G  VV DPACY+GH E +L+M  +FG    + FF  YHEL+P + PG   R+ +Y+L+HYLN YL FG  +R  C+ ++
Sbjct:   42 FFVKISASRDF-SMLEAEGKGLELMEKTQTVRVPH--SYLSGIKDSTAFLIIEFLDLRSHTSQSHEDLGRGLAQMHLHPGPEDYGLDHDNTIGLTPQVNTWTSSWIEFYRTYRLEFQLRMIEEKYSDTDLLEMAEPLLNRFPD-LFAGLEVKPSLLHGDLWGGNTAALADGTPVVYDPACYYGHHEADLSMTGMFGG-FSSYFFSAYHELIP-ESPGSAERIKVYQLYHYLNHYLLFGSSYRSACVDIM 284          
BLAST of mRNA_S-firma_M_contig938.20353.1 vs. uniprot
Match: A0A1B6KN19_9HEMI (Protein-ribulosamine 3-kinase n=5 Tax=Cicadellinae TaxID=33370 RepID=A0A1B6KN19_9HEMI)

HSP 1 Score: 167 bits (423), Expect = 1.930e-45
Identity = 103/262 (39.31%), Postives = 148/262 (56.49%), Query Frame = 1
Query:  328 FVKLDTTGDARAKLDGEVQGLHFMRRTRSVRVPKVIAVTTLPCGPAAALILEYVEMTTMTLDEERKFGTKLARMHMHRGS----------DHFGFPLNTWLETSLQINDWSDDWCEFFSKHRLGHQAQRILEKYEDDKLAAKVEMLRVGLRERFFKGVDIKPSLLHGNLGSQNWGADTTGRAVVCDPACYFGHSEMELAMLTLFGSPCKAGFFVMYHELLPRKEPGYENRMFLYKLHHYLNLYLQFGRGFRGTCMALLNLLL 1083
            FVK +    AR   DGE +GL  +  T +V VPK I V   P G  A L++E+ EM  +    ++  G  LA++H+H  S            FGF   T      Q N W DDW  FF+++RL +Q  ++LEK + D+ A ++      +   FFK ++IKPSLLHG+L S N  A+T    V+ DPA ++GH E +LA+  +FG      F+  YH+L+PR  PG+ENR  LY+L HYLN +  FG G+RG+C++ +  LL
Sbjct:   54 FVKSNKKSKARLMFDGEFEGLSAIAATNTVVVPKPIKVLDNPDG-GACLVMEFFEMKGLRRFSQQ-LGDSLAKLHLHNESLRNSKDPSYVKEFGFHTTTCCGYIPQENSWKDDWVSFFAQNRLDYQF-KLLEKEKGDREANELWSRLQIVLPTFFKDLEIKPSLLHGDLWSGN-AAETKTNPVIFDPAAFYGHHEYDLAIAGMFGG-FNRSFYDTYHKLIPRA-PGFENRHKLYQLFHYLNHWNHFGSGYRGSCISTMKSLL 309          
BLAST of mRNA_S-firma_M_contig938.20353.1 vs. uniprot
Match: A0A446TMC1_TRITD (Protein-ribulosamine 3-kinase, chloroplastic n=29 Tax=Triticeae TaxID=147389 RepID=A0A446TMC1_TRITD)

HSP 1 Score: 167 bits (424), Expect = 2.540e-45
Identity = 103/261 (39.46%), Postives = 147/261 (56.32%), Query Frame = 1
Query:  292 AFKAETKDGQFFFVKLDTTGDARAKLDGEVQGLHFMRRTRSVRVPKVIAVTTLPCGPAAALILEYVEMTTMTLDEERKFGTKLARMHMHRGSDH-FGFPLNTWLETSLQINDWSDDWCEFFSKHRLGHQAQRILEKYEDDKLAAKVEMLRVGLRERFFKGVDIKPSLLHGNLGSQNWGADTTGRAVVCDPACYFGHSEMELAMLTLFGSPCKAGFFVMYHELLPRKEPGYENRMFLYKLHHYLNLYLQFGRGFRGTCMALL 1071
            A + +T  G FF       G A  K  GE  GL  M  T+S+ VP    V +LP G ++ +I+EY++      D+    G KLA MH    SD  +GF +   + ++ QIN W+ DW EF+SKHRLG+Q + I +++ D  +  K + L +      F G  I+P LLHG+L S N  ADT G  V+ DPACY+GH+E E  M    G   +  F+  Y E++P K+PG+E R  LY L+HYLN Y  FG G+R + M+++
Sbjct:   73 AQRYDTDAGSFFVKTSRRIGPAMFK--GEALGLKAMYDTKSIHVPLPYKVGSLPTG-SSFIIMEYIQFGRSRGDQTA-LGRKLAEMHKAAKSDKGYGFYVENTIGSTPQINTWTADWIEFYSKHRLGYQLKLISQRFGDSAIYEKGQQL-IEKMHPLFDGAVIEPCLLHGDLWSGNISADTNGDPVILDPACYYGHNEAEFGMSWCAGFGGE--FYRSYFEVMP-KQPGFEKRRDLYLLYHYLNHYNLFGSGYRSSAMSII 325          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig938.20353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G503_ECTSI7.630e-9063.77Protein-ribulosamine 3-kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5L5M7_9PHAE5.090e-5845.86Protein-ribulosamine 3-kinase n=1 Tax=Ectocarpus s... [more]
UPI000E7038B46.130e-4839.77protein-ribulosamine 3-kinase, chloroplastic-like ... [more]
A0A1Y1ICK8_KLENI3.510e-4738.64Protein-ribulosamine 3-kinase n=1 Tax=Klebsormidiu... [more]
B4FVQ9_MAIZE3.790e-4738.78Protein-ribulosamine 3-kinase, chloroplastic n=15 ... [more]
UPI000C03D4735.530e-4737.01ketosamine-3-kinase-like n=1 Tax=Stylophora pistil... [more]
D8SZT1_SELML1.930e-4637.25Protein-ribulosamine 3-kinase, chloroplastic n=4 T... [more]
A0A6M1ZXQ1_9BACT2.680e-4637.75Uncharacterized protein n=1 Tax=Chlamydiae bacteri... [more]
A0A1B6KN19_9HEMI1.930e-4539.31Protein-ribulosamine 3-kinase n=5 Tax=Cicadellinae... [more]
A0A446TMC1_TRITD2.540e-4539.46Protein-ribulosamine 3-kinase, chloroplastic n=29 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig938contigS-firma_M_contig938:18522..22867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score279.6
Seed ortholog evalue2.1e-72
Seed eggNOG ortholog2880.D7G503
KEGG rclassRC00002,RC00078
KEGG koko:K00921,ko:K15523
KEGG ReactionR05802,R10951
KEGG Pathwayko00562,ko04070,ko04145,ko04810,map00562,map04070,map04145,map04810
EggNOG free text desc.protein-ribulosamine 3-kinase activity
EggNOG OGsCOG3001@1,KOG3021@2759
EC2.7.1.150,2.7.1.172
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-04_002400.1
Exons8
Model size1115
Cds size1113
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig938.20353.1prot_S-firma_M_contig938.20353.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig938 18522..22867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828768.968807-CDS-S-firma_M_contig938:18521..185671622828768.968807-CDS-S-firma_M_contig938:18521..18567Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 18522..18567 +
1697105151.3673296-CDS-S-firma_M_contig938:18521..185671697105151.3673296-CDS-S-firma_M_contig938:18521..18567Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 18522..18567 +
1622828768.981023-CDS-S-firma_M_contig938:19153..193681622828768.981023-CDS-S-firma_M_contig938:19153..19368Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 19154..19368 +
1697105151.3803442-CDS-S-firma_M_contig938:19153..193681697105151.3803442-CDS-S-firma_M_contig938:19153..19368Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 19154..19368 +
1622828768.9950774-CDS-S-firma_M_contig938:19955..200931622828768.9950774-CDS-S-firma_M_contig938:19955..20093Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 19956..20093 +
1697105151.3908494-CDS-S-firma_M_contig938:19955..200931697105151.3908494-CDS-S-firma_M_contig938:19955..20093Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 19956..20093 +
1622828769.008353-CDS-S-firma_M_contig938:20315..204411622828769.008353-CDS-S-firma_M_contig938:20315..20441Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 20316..20441 +
1697105151.401889-CDS-S-firma_M_contig938:20315..204411697105151.401889-CDS-S-firma_M_contig938:20315..20441Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 20316..20441 +
1622828769.0259488-CDS-S-firma_M_contig938:20922..209841622828769.0259488-CDS-S-firma_M_contig938:20922..20984Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 20923..20984 +
1697105151.4128075-CDS-S-firma_M_contig938:20922..209841697105151.4128075-CDS-S-firma_M_contig938:20922..20984Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 20923..20984 +
1622828769.0393808-CDS-S-firma_M_contig938:21659..218271622828769.0393808-CDS-S-firma_M_contig938:21659..21827Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 21660..21827 +
1697105151.4235802-CDS-S-firma_M_contig938:21659..218271697105151.4235802-CDS-S-firma_M_contig938:21659..21827Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 21660..21827 +
1622828769.054795-CDS-S-firma_M_contig938:22145..223151622828769.054795-CDS-S-firma_M_contig938:22145..22315Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 22146..22315 +
1697105151.433882-CDS-S-firma_M_contig938:22145..223151697105151.433882-CDS-S-firma_M_contig938:22145..22315Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 22146..22315 +
1622828769.0729802-CDS-S-firma_M_contig938:22679..228671622828769.0729802-CDS-S-firma_M_contig938:22679..22867Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 22680..22867 +
1697105151.4425683-CDS-S-firma_M_contig938:22679..228671697105151.4425683-CDS-S-firma_M_contig938:22679..22867Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 22680..22867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig938.20353.1

>prot_S-firma_M_contig938.20353.1 ID=prot_S-firma_M_contig938.20353.1|Name=mRNA_S-firma_M_contig938.20353.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=371bp
RGREELPRGEGGSAFGSLHRISRGTAKTSKAKATQTRTRIMSSTTNTFIG
VDKILVAHQRAISEAAFAATGKRITSFVSIGSATDSKPIGCEEPQHKAFK
AETKDGQFFFVKLDTTGDARAKLDGEVQGLHFMRRTRSVRVPKVIAVTTL
PCGPAAALILEYVEMTTMTLDEERKFGTKLARMHMHRGSDHFGFPLNTWL
ETSLQINDWSDDWCEFFSKHRLGHQAQRILEKYEDDKLAAKVEMLRVGLR
ERFFKGVDIKPSLLHGNLGSQNWGADTTGRAVVCDPACYFGHSEMELAML
TLFGSPCKAGFFVMYHELLPRKEPGYENRMFLYKLHHYLNLYLQFGRGFR
GTCMALLNLLLGPSVRGGSSA
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mRNA from alignment at S-firma_M_contig938:18522..22867+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig938.20353.1 ID=mRNA_S-firma_M_contig938.20353.1|Name=mRNA_S-firma_M_contig938.20353.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=4346bp|location=Sequence derived from alignment at S-firma_M_contig938:18522..22867+ (Sphaerotrichia firma Sfir_13m male)
AGAGGGAGAGAGGAGCTACCAAGAGGCGAGGGGGGATCTGCGTTCGGTGA GGTACTGGTAGCGTTTTCCATGCCTGAACTACTGTAGTTTCGTGTGACGT ATATAAAGTCAGTCTTCCAAAGTTGCAGTGAGAACAAATCCTACAAGAGG TTTTGTTTTTGAATGCGCCGTCTCTGATCAAGAAGAATCCACCATGAGCA GCGACACCTACGCCTGGACAGGCCCAACATCTGCTGATGAGGCTGTGATG TTGGTGGTTCAAGCTGTGTATTTCGGCAAAAGGTCCTCATCTGATGAATA ATTGACCAACGACGCCTACTTCGTAACACTGCTGTCATCATGCGCACCAT CCTATCGGGTAAGCTAAAATTGTTTGCAGCAGTTGTGGACATGAAACGGC CATCTGTTAGACTGCTACCATCCCACCTCTCTCCCGTGCCGGGGGCACTC TCGCAATGCACGCGCACGCGTAGTACAATTAGAGGAGGTACCTTCTTCTA AGACCCAGCACGGCAGTTTTCCACCCTTTGGCAAAGGCACAGACTCAAAA AAGTGAGAGACATTGTGGAGGCCAACAACAACAGCAGACAACAACAGCAG TGTTACCCGCTCGTTGCTCTGCCGTAAACCAGGTAGCCTGCACAGGATTT CAAGAGGCACGGCTAAGACGTCGAAGGCCAAGGCCACACAAACGCGCACT AGAATCATGTCCAGCACTACCAACACCTTCATCGGGGTTGACAAGATATT GGTTGCCCACCAGCGGGCGATCTCAGAGGCGGCCTTCGCTGCGACGGGCA AGAGGATCACAAGCTTCGTCTCCATCGGCTCCGCGACAGATTCCAAGGTA CAGGCAACTATGTACTTGGCATTTCTTCAGGCTCGCTGTCTACGTACGTT TGCATGTACCTCGAGAATACAAGCATGCTCGGAACAAAGATACGGTGTGC TGTCCAGATGCAGACTATCAGGACTGAGGACGGGTATGTGTACGTGTCAC GCCACACAATTATTGCGAGGCGACAGTGCCTCAGGAGACACGGAAGCGCG GTGGAGAAAGGGGGGCATGCTCTTCGGCGGCCTTGCAGACTCCGTCTTCC ACTTGTCGTGGCCAGACGCCGAAGATGGCCGACCAGTGCAACAAGCTTTC AGAATTGCATATTCGGCTGTTTTTTTCTGACGTGCTATGCATAGATAGAC TACACGTCTTCTCGTGTCCTAGCGAAGCATCTGCGAATCGAAGAGATGAT ACCGGCTCTTGATTTTGGTGCTTCTTTCGTTGCGAACGCTTTTTTATACT ATGTCCTCTGCTCCCATCGGTCATCTTTCCTTGGTGCCAAGTTCAAGCTT TCAGCCCTTTCGCTATCGTGCACTCCGTAACCAGCCGTCAGCTTCTTTGC TCCCGTCTATTTTCGGCCAACCTATCAAAACCAGCCGATAGGCTGTGAGG AACCCCAGCACAAGGCCTTCAAGGCCGAGACCAAGGACGGACAGTTCTTC TTCGTCAAGCTCGACACCACCGGCGACGCCCGAGCCAAGCTCGATGGAGA GGTACAGGGGCTGCACTTCATGGTGAGTGAGTCGTGGATTATGGAAATTA ATATAGTCGTGCTAGTTTACCACCCGCTACACAACAATTTTGATCGCGGA TCGGAGCAAAAATTTGTCGCTGCAATCCCAGTTGTTTTCGTAGTGCCCTG AGTTGTGCCCACGGACTATTGTACGGACTGCAACTTGGCGCTTGGAGATG GGCTAACCAACTTCTTGCCATGAATGCGTGCCCGCGCGAGGAAGAGGCGC ACCCGTAGCGTACGGGTCCCGAAGGTGATCGCGGTGACCACGCTCCCGTG TGGACCAGCAGCGGCGTTGATCTTGGAGTACGTCGAGATGACCACCATGA CCCTGGACGAAGAGAGGAAGGTAGGCGTTCGAAAACCTTTTCTCGGTCAG TGTCAGGAGGGCAAGGCAAGGCTGGCAACAGCAGCGAAGGCCACCATTTG TTGTTTCCGAGTTTTTTTTTTATCGCAATCGATTGCCATCACGGTTCCTG TGCTGCTGAGTTGGTATCTCGTGAGCCTACAGTAGATGTTCCCTTTCTGG CGGCAATCTGGTGCCCTCACGGACTACAACCAAGCACTGAAGAACCTCCT TGACGCCATACCGAGATATGAAATCAGTATCACAAACGCGTCGAAAATCA TCCATCGTCGCCGTTTTTCCCGTTCATGATGTTTTGCCTTGTAAACTTGT CTCCGAGAGGCATCGAATGTCCTATGCGTTGTCACTATCACTCCACTTCC TATGCTTTTACGGAATGCTTTGTCTAACTGCGTATTCTTCGCCCACCCCC TTCATGCTTGGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCA GTTCGGGACCAAGCTTGCTCGGATGCACATGCACAGGGGCAGCGATCACT TTGGCTTCCCTCTGTGAGACCATAGTTGATTGTCGTACCGGCGTGTGTGG TCAGGGAAGGGGGGGGGGGTTCACTCACGCAAGGGAACGACCGTTGTCGG AAAAAATTCGCAGACGGTATGCACGAGGCATTAAACCGCGCATTCCTACG ACACGAACAAAGAGGCGTAAATATAATACGACATCAGGTCCTGGTTGAGT AGAAGTCGCAAGAATCTGAAAATTCGGGTTGACGCGACGGGGAGGAGGGC AAGGTAGGTTAGAACGGATGGGGCGGGCTCTGTTCTCGTCTCTGTTCTCG TGCGATGCACCTGTCCTTTTGCTGTCCTCCAAGTAGTGATGGTTCGCGGT ATCAGCAGCAATGCTGATGGTGGGGGTGGTTGCTTTAGGCTAGGTTTTGG CAGGGGTTATTTGTGCTTTTCAATCCCCTCTCCCGCCCTCTTTCCTGGGT CTCGTCTTTAAAAACTCTGATGATTACGAATCTAGATGGGGGTTTTATTT AAAAAGTGAAATTTTAAATGGCCGTGTTGCAATGATTGCTTTAATAATAA TATTAGGAATTGAGATTTTAACAAAGCAGACATTAAAGTGAGCACCTCCT TTCCATGCAGAAACACCCACATCGTCGACCCCCTCCGCCCCCCGCCCGAA CCCTTGATCGATGATGGCTCGCTTGTTCGCCCACTTAGCAACACCTGGCT CGAGACGTCGCTGCAGATCAACGACTGGAGCGACGACTGGTGCGAATTCT TTTCCAAGCACAGGCTGGGTCATCAGGCACAGAGAATTCTGGAGAAGTAC GAAGACGACAAGCTGGCCGCGAAAGTGGAGATGCTGAGGGTGGGCCTTCG AGAGAGGTGAGGGGAGAGCACGAGGGTGCGGGAGGTTTGGGTTGGTGGGT GATGTCGTTTGGTTGATTTGCGCGGGATGGTTTCCGTGTGCCACTGGTGG GCGTTTTTTTTGACGTTTTGTTGGAGAGAGCAGGATGTTGTTGTTGTTGT TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCGATCT TTGCCGTTGTGCTTCACTGAGCTCTACCTGACGCCATGTCCTCCACGCGC ACCCCTTCTTCGTCTTCCTCGGCTTTTACGAAATACATCTCTCGCCTCCT GATAAAATGCCAACCCCGCGAAAGGTTTTTTAAAGGCGTGGACATCAAGC CTTCCCTCTTGCACGGCAACCTCGGGAGCCAAAACTGGGGGGCGGACACC ACTGGCAGGGCAGTGGTGTGCGATCCCGCTTGTTACTTCGGGCATTCCGA GATGGAGTTGGCGATGCTCACCCTCTTCGGATCGCCTTGCAAAGGTAAGT ACGCACGTGTGTGCCTCTGCCTAGCGTTGTTTGTCTGAACGAACGCAGTT GTTTGAGGCACAGACAGCTAGATTCATACGTCGAAGTGCGTGCGAGGGAA GGACGACACCGTAGCGAGAAAGAGACAGGGATGAAAAATATCTAGAGGGC GACAGAGATGGATCGATGAACCGAAGGGCCAACAAGACGAAAATAAAACT TCGTGCAAGCGATGCATTGTGGACTTGCTAGCAAGACCTCCACTGTAGGC GGTGCTTTCCTCCCGAGCTTTCCCGGTACTCCCAACCGAAGGAGATGTAA GGTCAACGCGACTACCACGGTAAGCACCGACCCCCCCCCCTCCCGCACGA ATCACGAGCAGGGTTTTTCGTCATGTACCATGAGCTCCTGCCCAGGAAGG AGCCGGGCTACGAGAACAGGATGTTTCTCTACAAGCTCCACCACTACCTG AACCTGTACCTCCAGTTCGGCCGCGGCTTCCGAGGCACCTGCATGGCGCT GCTCAACCTTCTCTTGGGGCCCAGCGTTCGCGGCGGCAGCAGCGCC
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Coding sequence (CDS) from alignment at S-firma_M_contig938:18522..22867+

>mRNA_S-firma_M_contig938.20353.1 ID=mRNA_S-firma_M_contig938.20353.1|Name=mRNA_S-firma_M_contig938.20353.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=2226bp|location=Sequence derived from alignment at S-firma_M_contig938:18522..22867+ (Sphaerotrichia firma Sfir_13m male)
AGAGGGAGAGAGGAGCTACCAAGAGGCGAGGGGGGATCTGCGTTCGAGAG
GGAGAGAGGAGCTACCAAGAGGCGAGGGGGGATCTGCGTTCGGTAGCCTG
CACAGGATTTCAAGAGGCACGGCTAAGACGTCGAAGGCCAAGGCCACACA
AACGCGCACTAGAATCATGTCCAGCACTACCAACACCTTCATCGGGGTTG
ACAAGATATTGGTTGCCCACCAGCGGGCGATCTCAGAGGCGGCCTTCGCT
GCGACGGGCAAGAGGATCACAAGCTTCGTCTCCATCGGCTCCGCGACAGA
TTCCAAGGTAGCCTGCACAGGATTTCAAGAGGCACGGCTAAGACGTCGAA
GGCCAAGGCCACACAAACGCGCACTAGAATCATGTCCAGCACTACCAACA
CCTTCATCGGGGTTGACAAGATATTGGTTGCCCACCAGCGGGCGATCTCA
GAGGCGGCCTTCGCTGCGACGGGCAAGAGGATCACAAGCTTCGTCTCCAT
CGGCTCCGCGACAGATTCCAAGCCGATAGGCTGTGAGGAACCCCAGCACA
AGGCCTTCAAGGCCGAGACCAAGGACGGACAGTTCTTCTTCGTCAAGCTC
GACACCACCGGCGACGCCCGAGCCAAGCTCGATGGAGAGGTACAGGGGCT
GCACTTCATGCCGATAGGCTGTGAGGAACCCCAGCACAAGGCCTTCAAGG
CCGAGACCAAGGACGGACAGTTCTTCTTCGTCAAGCTCGACACCACCGGC
GACGCCCGAGCCAAGCTCGATGGAGAGGTACAGGGGCTGCACTTCATGAG
GCGCACCCGTAGCGTACGGGTCCCGAAGGTGATCGCGGTGACCACGCTCC
CGTGTGGACCAGCAGCGGCGTTGATCTTGGAGTACGTCGAGATGACCACC
ATGACCCTGGACGAAGAGAGGAAGAGGCGCACCCGTAGCGTACGGGTCCC
GAAGGTGATCGCGGTGACCACGCTCCCGTGTGGACCAGCAGCGGCGTTGA
TCTTGGAGTACGTCGAGATGACCACCATGACCCTGGACGAAGAGAGGAAG
TTCGGGACCAAGCTTGCTCGGATGCACATGCACAGGGGCAGCGATCACTT
TGGCTTCCCTCTTTCGGGACCAAGCTTGCTCGGATGCACATGCACAGGGG
CAGCGATCACTTTGGCTTCCCTCTCAACACCTGGCTCGAGACGTCGCTGC
AGATCAACGACTGGAGCGACGACTGGTGCGAATTCTTTTCCAAGCACAGG
CTGGGTCATCAGGCACAGAGAATTCTGGAGAAGTACGAAGACGACAAGCT
GGCCGCGAAAGTGGAGATGCTGAGGGTGGGCCTTCGAGAGAGCAACACCT
GGCTCGAGACGTCGCTGCAGATCAACGACTGGAGCGACGACTGGTGCGAA
TTCTTTTCCAAGCACAGGCTGGGTCATCAGGCACAGAGAATTCTGGAGAA
GTACGAAGACGACAAGCTGGCCGCGAAAGTGGAGATGCTGAGGGTGGGCC
TTCGAGAGAGGTTTTTTAAAGGCGTGGACATCAAGCCTTCCCTCTTGCAC
GGCAACCTCGGGAGCCAAAACTGGGGGGCGGACACCACTGGCAGGGCAGT
GGTGTGCGATCCCGCTTGTTACTTCGGGCATTCCGAGATGGAGTTGGCGA
TGCTCACCCTCTTCGGATCGCCTTGCAAAGGTTTTTTAAAGGCGTGGACA
TCAAGCCTTCCCTCTTGCACGGCAACCTCGGGAGCCAAAACTGGGGGGCG
GACACCACTGGCAGGGCAGTGGTGTGCGATCCCGCTTGTTACTTCGGGCA
TTCCGAGATGGAGTTGGCGATGCTCACCCTCTTCGGATCGCCTTGCAAAG
CAGGGTTTTTCGTCATGTACCATGAGCTCCTGCCCAGGAAGGAGCCGGGC
TACGAGAACAGGATGTTTCTCTACAAGCTCCACCACTACCTGAACCTGTA
CCTCCAGTTCGGCCGCGGCTTCCGAGGCACCTGCATGGCGCTGCTCAACC
TTCTCTTGGGGCCCAGCGTTCGCGGCGGCAGCAGCGCCCAGGGTTTTTCG
TCATGTACCATGAGCTCCTGCCCAGGAAGGAGCCGGGCTACGAGAACAGG
ATGTTTCTCTACAAGCTCCACCACTACCTGAACCTGTACCTCCAGTTCGG
CCGCGGCTTCCGAGGCACCTGCATGGCGCTGCTCAACCTTCTCTTGGGGC
CCAGCGTTCGCGGCGGCAGCAGCGCC
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