mRNA_S-firma_M_contig938.20352.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig938.20352.1
Unique NamemRNA_S-firma_M_contig938.20352.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig938.20352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig938contigS-firma_M_contig938:15135..15441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size307
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828768.5367277-CDS-S-firma_M_contig938:15134..154401622828768.5367277-CDS-S-firma_M_contig938:15134..15440Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 15135..15440 +
1697105151.076871-CDS-S-firma_M_contig938:15134..154401697105151.076871-CDS-S-firma_M_contig938:15134..15440Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig938 15135..15440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig938.20352.1prot_S-firma_M_contig938.20352.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig938 15135..15440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig938.20352.1

>prot_S-firma_M_contig938.20352.1 ID=prot_S-firma_M_contig938.20352.1|Name=mRNA_S-firma_M_contig938.20352.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=102bp
VTTGTLQRLAYAESTQDRCQTGSTKPQKQQLCDGAAVGRSSCILGLALPG
SRPWFKAWVSATLLAHSMALEDCRSYDCRCQKSCLSKKYEGTQPNLKPET
IS
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mRNA from alignment at S-firma_M_contig938:15135..15441+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig938.20352.1 ID=mRNA_S-firma_M_contig938.20352.1|Name=mRNA_S-firma_M_contig938.20352.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=307bp|location=Sequence derived from alignment at S-firma_M_contig938:15135..15441+ (Sphaerotrichia firma Sfir_13m male)
GTCACCACCGGCACCCTCCAACGCCTTGCGTATGCAGAAAGTACACAAGA
TCGCTGTCAAACAGGGTCGACCAAACCACAAAAACAGCAGCTCTGCGACG
GCGCAGCGGTGGGGCGTTCAAGCTGCATTTTGGGGCTTGCACTACCAGGC
AGTAGACCGTGGTTCAAGGCGTGGGTCTCAGCAACCCTGCTGGCACACAG
TATGGCTCTCGAAGATTGCAGGAGCTACGACTGCCGATGTCAAAAGTCGT
GTCTCTCGAAGAAATACGAAGGTACGCAGCCGAATCTCAAACCAGAAACG
ATTTCAC
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Coding sequence (CDS) from alignment at S-firma_M_contig938:15135..15441+

>mRNA_S-firma_M_contig938.20352.1 ID=mRNA_S-firma_M_contig938.20352.1|Name=mRNA_S-firma_M_contig938.20352.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=612bp|location=Sequence derived from alignment at S-firma_M_contig938:15135..15441+ (Sphaerotrichia firma Sfir_13m male)
GTCACCACCGGCACCCTCCAACGCCTTGCGTATGCAGAAAGTACACAAGA
TCGCTGTCAAACAGGGTCGACCAAACCACAAAAACAGCAGCTCTGCGACG
GCGCAGCGGTGGGGCGTTCAAGCTGCATTTTGGGGCTTGCACTACCAGGC
AGTAGACCGTGGTTCAAGGCGTGGGTCTCAGCAACCCTGCTGGCACACAG
TATGGCTCTCGAAGATTGCAGGAGCTACGACTGCCGATGTCAAAAGTCGT
GTCTCTCGAAGAAATACGAAGGTACGCAGCCGAATCTCAAACCAGAAACG
ATTTCAGTCACCACCGGCACCCTCCAACGCCTTGCGTATGCAGAAAGTAC
ACAAGATCGCTGTCAAACAGGGTCGACCAAACCACAAAAACAGCAGCTCT
GCGACGGCGCAGCGGTGGGGCGTTCAAGCTGCATTTTGGGGCTTGCACTA
CCAGGCAGTAGACCGTGGTTCAAGGCGTGGGTCTCAGCAACCCTGCTGGC
ACACAGTATGGCTCTCGAAGATTGCAGGAGCTACGACTGCCGATGTCAAA
AGTCGTGTCTCTCGAAGAAATACGAAGGTACGCAGCCGAATCTCAAACCA
GAAACGATTTCA
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