mRNA_S-firma_M_contig9379.20346.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9379.20346.1
Unique NamemRNA_S-firma_M_contig9379.20346.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9379.20346.1 vs. uniprot
Match: D8LCT6_ECTSI (Vacuolar proton pump subunit B n=3 Tax=PX clade TaxID=569578 RepID=D8LCT6_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 8.200e-104
Identity = 157/163 (96.32%), Postives = 158/163 (96.93%), Query Frame = 1 
Query:    1 DPTIERIITPRLTLTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVNGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQARENGQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYAQ 489
            DPTIERIITPRLTLTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRV GRNGSITQLPILTMPNDDITHPIPDLTGYITEGQ   + QLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYAQ
Sbjct:  236 DPTIERIITPRLTLTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVTGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYAQ 398
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BLAST of mRNA_S-firma_M_contig9379.20346.1 vs. uniprot
Match: B8C0L1_THAPS (Vacuolar proton pump subunit B n=21 Tax=Bacillariophyta TaxID=2836 RepID=B8C0L1_THAPS)

HSP 1 Score: 297 bits (760), Expect = 1.300e-96
Identity = 150/162 (92.59%), Postives = 153/162 (94.44%), Query Frame = 1 
Query:    1 DPTIERIITPRLTLTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVNGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQARENGQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYA 486
            DPTIERIITPRL LTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRV GRNGSITQLPILTMPNDDITHPIPDLTGYITEGQ   + QLHTK IFPPINVLPSLSRLMKSAIGEGMTR+DH +VSNQLYA YA
Sbjct:  251 DPTIERIITPRLALTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVVGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLHTKGIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYASYA 412
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BLAST of mRNA_S-firma_M_contig9379.20346.1 vs. uniprot
Match: F0Y5A7_AURAN (Vacuolar proton pump subunit B n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0Y5A7_AURAN)

HSP 1 Score: 295 bits (754), Expect = 5.750e-96
Identity = 147/162 (90.74%), Postives = 152/162 (93.83%), Query Frame = 1 
Query:    1 DPTIERIITPRLTLTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVNGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQARENGQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYA 486
            DPTIERIITPRL LTTAEYLAYE+DLHVL ILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRV+GRNGSITQLPILTMPNDDITHPIPDLTGYITEGQ   + Q+H KEIFPPINVLPSLSRLMKSAIGEGMTR+DH  VSNQLYA YA
Sbjct:  230 DPTIERIITPRLALTTAEYLAYEKDLHVLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVDGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQMHNKEIFPPINVLPSLSRLMKSAIGEGMTRDDHGAVSNQLYASYA 391
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BLAST of mRNA_S-firma_M_contig9379.20346.1 vs. uniprot
Match: A0A7S2BPA0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BPA0_9STRA)

HSP 1 Score: 290 bits (742), Expect = 1.170e-95
Identity = 146/163 (89.57%), Postives = 150/163 (92.02%), Query Frame = 1 
Query:    1 DPTIERIITPRLTLTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVNGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQARENGQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYAQ 489
            DPTIERIITPRL LTTAEYLAYERD HVL ILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRV GRNGSITQLPILTMPNDDITHPIPDLTGYITEGQ   +  +  KEIFPPINVLPSLSRLMKSAIGEGMTR+DH +VSNQLYA YAQ
Sbjct:  114 DPTIERIITPRLALTTAEYLAYERDYHVLCILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVVGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRMMQNKEIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYASYAQ 276
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BLAST of mRNA_S-firma_M_contig9379.20346.1 vs. uniprot
Match: K3X8G8_GLOUD (Vacuolar proton pump subunit B n=39 Tax=Oomycota TaxID=4762 RepID=K3X8G8_GLOUD)

HSP 1 Score: 293 bits (751), Expect = 2.160e-95
Identity = 146/162 (90.12%), Postives = 152/162 (93.83%), Query Frame = 1 
Query:    1 DPTIERIITPRLTLTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVNGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQARENGQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYA 486
            DPTIERIITP+L LTTAEYLAYERD+HVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRV GRNGSITQLPILTMPNDDITHPIPDLTGYITEGQ   + QLH ++IFPPINVLPSLSRLMKSAIGEGMTR+DH  VSNQLYA YA
Sbjct:  245 DPTIERIITPKLALTTAEYLAYERDMHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVTGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIFPPINVLPSLSRLMKSAIGEGMTRDDHSAVSNQLYASYA 406
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BLAST of mRNA_S-firma_M_contig9379.20346.1 vs. uniprot
Match: W4FRS5_9STRA (Vacuolar proton pump subunit B n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FRS5_9STRA)

HSP 1 Score: 293 bits (751), Expect = 3.570e-95
Identity = 147/162 (90.74%), Postives = 152/162 (93.83%), Query Frame = 1 
Query:    1 DPTIERIITPRLTLTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVNGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQARENGQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYA 486
            DPTIERIITPRL LTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRV GRNGSITQLPILTMPNDDITHPIPDLTGYITEGQ   + QLH ++IFPPINVLPSLSRLMKSAIG+GMTR+DH  VSNQLYA YA
Sbjct:  254 DPTIERIITPRLALTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVMGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIFPPINVLPSLSRLMKSAIGDGMTRDDHSAVSNQLYASYA 415
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BLAST of mRNA_S-firma_M_contig9379.20346.1 vs. uniprot
Match: A0A7S2XY44_9STRA (Vacuolar proton pump subunit B n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY44_9STRA)

HSP 1 Score: 292 bits (748), Expect = 6.120e-95
Identity = 148/163 (90.80%), Postives = 151/163 (92.64%), Query Frame = 1 
Query:    1 DPTIERIITPRLTLTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVNGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQARENGQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYAQ 489
            DPTIERIITPRL LTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRV GRNGSITQLPILTMPNDDITHPIPDLTGYITEGQ   +  LH KE+FPPINVLPSLSRLMKSAIG GMTR+DH  VSNQLYA YAQ
Sbjct:  238 DPTIERIITPRLALTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVMGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRALHNKEVFPPINVLPSLSRLMKSAIGVGMTRDDHDCVSNQLYASYAQ 400
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BLAST of mRNA_S-firma_M_contig9379.20346.1 vs. uniprot
Match: A0A2D4CAE7_PYTIN (Vacuolar proton pump subunit B n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAE7_PYTIN)

HSP 1 Score: 292 bits (747), Expect = 1.390e-94
Identity = 145/162 (89.51%), Postives = 152/162 (93.83%), Query Frame = 1 
Query:    1 DPTIERIITPRLTLTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVNGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQARENGQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYA 486
            DPTIERIITPRL LTTAEYLAYER++HVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRV+GRNGSITQ PILTMPNDDITHPIPDLTGYITEGQ   + QLH ++IFPPINVLPSLSRLMKSAIGEGMTR+DH  VSNQLYA YA
Sbjct:  242 DPTIERIITPRLALTTAEYLAYEREMHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVSGRNGSITQFPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIFPPINVLPSLSRLMKSAIGEGMTRDDHSAVSNQLYASYA 403
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BLAST of mRNA_S-firma_M_contig9379.20346.1 vs. uniprot
Match: S7XUS6_SPRLO (Vacuolar proton pump subunit B n=1 Tax=Spraguea lophii (strain 42_110) TaxID=1358809 RepID=S7XUS6_SPRLO)

HSP 1 Score: 290 bits (742), Expect = 3.810e-94
Identity = 142/162 (87.65%), Postives = 152/162 (93.83%), Query Frame = 1 
Query:    1 DPTIERIITPRLTLTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVNGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQARENGQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYA 486
            DPTIERIITPRL LTTAEYLAYE + HVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGR+NGRNGSITQ+PILTMPNDDITHPIPDLTGYITEGQ   + Q+H ++I+PPINVLPSLSRLMKSAIGEGMTR+DH +VSNQLYA YA
Sbjct:  237 DPTIERIITPRLALTTAEYLAYEAEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRINGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQVYVDRQMHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYAKYA 398
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BLAST of mRNA_S-firma_M_contig9379.20346.1 vs. uniprot
Match: A0A7S0BF95_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BF95_9RHOD)

HSP 1 Score: 282 bits (721), Expect = 7.370e-94
Identity = 141/162 (87.04%), Postives = 149/162 (91.98%), Query Frame = 1 
Query:    1 DPTIERIITPRLTLTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVNGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQARENGQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYA 486
            DPTIERIITPRL LTTAEYLAYE   HVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDL+TIYERAGR+ GR GSITQLPILTMPNDDITHPIPDLTGYITEGQ   + QLH ++I+PPINVLPSLSRLMKSAIGEGMTR+DH +VSNQLYA YA
Sbjct:   15 DPTIERIITPRLALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRPGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYAAYA 176
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9379.20346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCT6_ECTSI8.200e-10496.32Vacuolar proton pump subunit B n=3 Tax=PX clade Ta... [more]
B8C0L1_THAPS1.300e-9692.59Vacuolar proton pump subunit B n=21 Tax=Bacillario... [more]
F0Y5A7_AURAN5.750e-9690.74Vacuolar proton pump subunit B n=2 Tax=Pelagomonad... [more]
A0A7S2BPA0_9STRA1.170e-9589.57Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
K3X8G8_GLOUD2.160e-9590.12Vacuolar proton pump subunit B n=39 Tax=Oomycota T... [more]
W4FRS5_9STRA3.570e-9590.74Vacuolar proton pump subunit B n=9 Tax=Aphanomyces... [more]
A0A7S2XY44_9STRA6.120e-9590.80Vacuolar proton pump subunit B n=1 Tax=Fibrocapsa ... [more]
A0A2D4CAE7_PYTIN1.390e-9489.51Vacuolar proton pump subunit B n=1 Tax=Pythium ins... [more]
S7XUS6_SPRLO3.810e-9487.65Vacuolar proton pump subunit B n=1 Tax=Spraguea lo... [more]
A0A7S0BF95_9RHOD7.370e-9487.04Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9379contigS-firma_M_contig9379:452..2504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score315.8
Seed ortholog evalue1.2e-83
Seed eggNOG ortholog2880.D8LCT6
Preferred nameATP6V1B1
KEGG koko:K02147
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
GOsGO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000331,GO:0001503,GO:0001666,GO:0001678,GO:0001726,GO:0003008,GO:0003674,GO:0003779,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0005902,GO:0005903,GO:0005911,GO:0006355,GO:0006357,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006874,GO:0006875,GO:0006885,GO:0006914,GO:0006950,GO:0006996,GO:0007010,GO:0007015,GO:0007035,GO:0007154,GO:0007155,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007423,GO:0007588,GO:0007600,GO:0007605,GO:0008064,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008286,GO:0008324,GO:0009056,GO:0009268,GO:0009405,GO:0009506,GO:0009507,GO:0009536,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009757,GO:0009790,GO:0009887,GO:0009889,GO:0009894,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010038,GO:0010182,GO:0010243,GO:0010255,GO:0010468,GO:0010494,GO:0010506,GO:0010556,GO:0010639,GO:0010941,GO:0010942,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015682,GO:0015833,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016043,GO:0016241,GO:0016323,GO:0016324,GO:0016328,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019725,GO:0019829,GO:0022603,GO:0022607,GO:0022610,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030029,GO:0030036,GO:0030054,GO:0030139,GO:0030641,GO:0030659,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030837,GO:0031090,GO:0031164,GO:0031224,GO:0031252,GO:0031323,GO:0031326,GO:0031329,GO:0031333,GO:0031410,GO:0031982,GO:0032271,GO:0032272,GO:0032501,GO:0032502,GO:0032535,GO:0032868,GO:0032869,GO:0032870,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033500,GO:0033572,GO:0034220,GO:0034284,GO:0034622,GO:0035770,GO:0036176,GO:0036293,GO:0036442,GO:0036464,GO:0042221,GO:0042470,GO:0042471,GO:0042472,GO:0042592,GO:0042593,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0042995,GO:0043067,GO:0043068,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043242,GO:0043244,GO:0043248,GO:0043254,GO:0043434,GO:0043492,GO:0043583,GO:0043933,GO:0044085,GO:0044087,GO:0044232,GO:0044237,GO:0044248,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044769,GO:0044877,GO:0045177,GO:0045184,GO:0045335,GO:0045851,GO:0046686,GO:0046961,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048598,GO:0048731,GO:0048770,GO:0048839,GO:0048856,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050877,GO:0050896,GO:0050954,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051452,GO:0051453,GO:0051493,GO:0051494,GO:0051693,GO:0051704,GO:0051716,GO:0055044,GO:0055065,GO:0055067,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060142,GO:0060255,GO:0061572,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070482,GO:0070887,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072503,GO:0072507,GO:0072512,GO:0080090,GO:0090066,GO:0090596,GO:0090662,GO:0097435,GO:0097708,GO:0098588,GO:0098590,GO:0098609,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0098858,GO:0098862,GO:0099131,GO:0099132,GO:0110053,GO:0120025,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901879,GO:1901880,GO:1902600,GO:1902903,GO:1902904,GO:1902906,GO:1903506,GO:1990816,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.ATP hydrolysis coupled proton transport
EggNOG OGsCOG1156@1,KOG1351@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size501
Cds size501
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9379.20346.1prot_S-firma_M_contig9379.20346.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9379 452..2504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828768.3311021-CDS-S-firma_M_contig9379:451..5831622828768.3311021-CDS-S-firma_M_contig9379:451..583Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9379 452..583 +
1697105150.9443414-CDS-S-firma_M_contig9379:451..5831697105150.9443414-CDS-S-firma_M_contig9379:451..583Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9379 452..583 +
1622828768.3452578-CDS-S-firma_M_contig9379:1452..16671622828768.3452578-CDS-S-firma_M_contig9379:1452..1667Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9379 1453..1667 +
1697105150.9639716-CDS-S-firma_M_contig9379:1452..16671697105150.9639716-CDS-S-firma_M_contig9379:1452..1667Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9379 1453..1667 +
1622828768.3595634-CDS-S-firma_M_contig9379:2350..25041622828768.3595634-CDS-S-firma_M_contig9379:2350..2504Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9379 2351..2504 +
1697105150.9793513-CDS-S-firma_M_contig9379:2350..25041697105150.9793513-CDS-S-firma_M_contig9379:2350..2504Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9379 2351..2504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9379.20346.1

>prot_S-firma_M_contig9379.20346.1 ID=prot_S-firma_M_contig9379.20346.1|Name=mRNA_S-firma_M_contig9379.20346.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=167bp
DPTIERIITPRLTLTTAEYLAYERDLHVLVILTDMSSYADALREVSAARE
EVPGRRGYPGYMYTDLSTIYERAGRVNGRNGSITQLPILTMPNDDITHPI
PDLTGYITEGQARENGQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDH
WNVSNQLYAMYAQVSF*
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mRNA from alignment at S-firma_M_contig9379:452..2504+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9379.20346.1 ID=mRNA_S-firma_M_contig9379.20346.1|Name=mRNA_S-firma_M_contig9379.20346.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2053bp|location=Sequence derived from alignment at S-firma_M_contig9379:452..2504+ (Sphaerotrichia firma Sfir_13m male)
GACCCCACGATCGAGCGCATCATCACGCCGCGCTTGACCCTCACCACCGC
CGAGTACCTCGCCTACGAGCGCGACCTGCACGTGCTGGTGATCCTCACCG
ACATGTCGTCGTACGCAGATGCCCTCCGTGAGGTGAGAGAGAGAGAGGCG
AAGCAAGCAAGCAAGGTGGAGAAGGAGGAGGAGGAGAGGCCAGCCCCGTG
TTGCCCGTGGTGCTGTGGTCGCAAGGCGTGTCGTTGTGAAAAGTGTCCGT
GAATCGCGGCGAGTTGGATGTTTCGATGTGTGTAGGGTGTGTTGTTGTCT
TGTAGGTTTGTGTTGACAAGGTAGGCGCGCCACGTGGCGCCTGTCACACG
TGTCTAGCTGCTGTCTTGTCATCTTAATACGGCGTGTGTTGACAAGCGCC
TGTCACACGTGCCTAGCTGCTGTCATCCTTGTACGGCATGTGTTGACAAG
ACAAGCGCGGTGGCGACTGTCACACGTGTCTAGCTGCTGTCATCCTAATA
CGGCGTGTCCAGCTAGCTAGCATCCCGGCGTGTTTAGCTGGCATCCTCAC
TGCGCAATCTAGCCACTGTAGCACTACTGCGTGCGCTCAGTACATGTAGT
GTAGGAGAGAAGAGGCGAGCAGGCTGCAACGCATGTCGATTGGTGCGTAG
GGTAGGCGAAAGCGGAGGCGTGATGTGATGTGATGTGATGTGATGTGACG
TTCGAAACACGGCCTGGGTGGGTTGCTTGCGGCGAGAAACGTGACGGTTC
GCGGCCGTGTCAACATGTACTTTACCGTCGGAGAGGACGTGCGATGCGTC
TGCTGACCTGCCTGCCTGCCTGCCTGGTGCTCTGGCTACGACGATCGGTT
TTGAGTCTCGCTATTCCCTCGCCTCCACTCTTCTCTCCTCCTACACACAC
GCCCCCCGCCGCAGACGGCCTGCTTTTCTTCCATCCCTCCGCGTTCGTGT
TGATCGCGCGTGTCTCATCTTTTGCCCAACGATCCGTCACGTCACGACCA
GGTGTCCGCCGCCCGTGAGGAAGTGCCCGGTCGCCGTGGTTACCCCGGGT
ACATGTACACCGATTTGTCCACCATCTACGAGCGCGCCGGCCGCGTGAAC
GGCCGCAACGGCTCCATCACCCAGCTGCCCATCCTCACGATGCCCAACGA
CGACATCACCCACCCCATCCCCGACCTGACGGGCTACATCACGGAGGGGC
AGGCGAGAGAGAACGGGTGCTTTGCGCCCCGGTAGTTCGTTACTAAGTTT
TCTACATTCGTCAGCCGTATACAGTACTTCCGTCCTGTGAATAAGTCGTT
CCAGGGGGACTGGCTGTTGTATACACACTAACCCTCCCCGTCCCAGCCAG
CAGCATGGTTTTTTGTGGGTTAGGGTTCGTGGCGCTGGTGTTGTTGTCGC
CGGTTTCCCGCGGCTGTGTGCCCGTGCGCGCGGCGGTATCGTGACAGCAG
CCGACAGCAGCTCCTGGACCTGTGTGTGTATTGCTCGAGACACGTTGTGT
ACACATCTCGCTGAGAGGCACACGCCTTCTAGGGAGGAGACTACTCCCCG
TGTGAGCCGTAGATGCAGAAGCCAGACGGCGGATAGTCTGCAGCAAGCAG
TGGTGGTGGTGGTGGTGTGGTTCTCGTTGTTGCGTGGCTTGCCTTTGCTC
CTGCTACCGTACCGCCCACGCCAACGCGAAAAAACGCCGTTGTTTGTGTC
ATGACACGGTATGTGGTTTGCTGCCGTGGGTCCTCCATGTACGGTACGGT
ACTTTCTCCCCGGCGCGTGCCGCATGATGTTGCGGTGCCCCCTGCTGCTG
CTGCTAACCCTGCCGCGGGTGTTTTTCGTTTGTCATGCCACCGCATCTCT
CGCCGATGTTTTTTTTTTTTTTTTTCGCTCTTCAGATCTACCTCGACAGG
CAGCTGCACACGAAGGAGATCTTCCCCCCCATCAACGTTCTGCCGTCGCT
GTCGCGGCTGATGAAGTCCGCCATCGGGGAGGGCATGACCCGCGAGGACC
ACTGGAACGTTTCCAACCAGCTGTACGCCATGTACGCCCAGGTGAGCTTT
TAG
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Coding sequence (CDS) from alignment at S-firma_M_contig9379:452..2504+

>mRNA_S-firma_M_contig9379.20346.1 ID=mRNA_S-firma_M_contig9379.20346.1|Name=mRNA_S-firma_M_contig9379.20346.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1002bp|location=Sequence derived from alignment at S-firma_M_contig9379:452..2504+ (Sphaerotrichia firma Sfir_13m male)
GACCCCACGATCGAGCGCATCATCACGCCGCGCTTGACCCTCACCACCGC
CGAGTACCTCGCCTACGAGCGCGACCTGCACGTGCTGGTGATCCTCACCG
ACATGTCGTCGTACGCAGATGCCCTCCGTGAGGACCCCACGATCGAGCGC
ATCATCACGCCGCGCTTGACCCTCACCACCGCCGAGTACCTCGCCTACGA
GCGCGACCTGCACGTGCTGGTGATCCTCACCGACATGTCGTCGTACGCAG
ATGCCCTCCGTGAGGTGTCCGCCGCCCGTGAGGAAGTGCCCGGTCGCCGT
GGTTACCCCGGGTACATGTACACCGATTTGTCCACCATCTACGAGCGCGC
CGGCCGCGTGAACGGCCGCAACGGCTCCATCACCCAGCTGCCCATCCTCA
CGATGCCCAACGACGACATCACCCACCCCATCCCCGACCTGACGGGCTAC
ATCACGGAGGGGCAGGCGAGAGAGAACGGGTGTCCGCCGCCCGTGAGGAA
GTGCCCGGTCGCCGTGGTTACCCCGGGTACATGTACACCGATTTGTCCAC
CATCTACGAGCGCGCCGGCCGCGTGAACGGCCGCAACGGCTCCATCACCC
AGCTGCCCATCCTCACGATGCCCAACGACGACATCACCCACCCCATCCCC
GACCTGACGGGCTACATCACGGAGGGGCAGGCGAGAGAGAACGGGCAGCT
GCACACGAAGGAGATCTTCCCCCCCATCAACGTTCTGCCGTCGCTGTCGC
GGCTGATGAAGTCCGCCATCGGGGAGGGCATGACCCGCGAGGACCACTGG
AACGTTTCCAACCAGCTGTACGCCATGTACGCCCAGGTGAGCTTTTAGGC
AGCTGCACACGAAGGAGATCTTCCCCCCCATCAACGTTCTGCCGTCGCTG
TCGCGGCTGATGAAGTCCGCCATCGGGGAGGGCATGACCCGCGAGGACCA
CTGGAACGTTTCCAACCAGCTGTACGCCATGTACGCCCAGGTGAGCTTTT
AG
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