mRNA_S-firma_M_contig9376.20344.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9376.20344.1
Unique NamemRNA_S-firma_M_contig9376.20344.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9376.20344.1 vs. uniprot
Match: D8LQA7_ECTSI (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQA7_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.910e-40
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 AVFPGLRAVSRLLVAEFYGSTLWYPAQCLMELNRLQENFHGHGEDADRHLMLLATSLDDGSLVGFVDVDGREKRPGQS 234
            A F  LRAVSRLLVAEFYGST+WYPAQCL+ELNRLQENFHG+GEDA RHLMLLATS++DGSL GFVD+DGREKRPGQ+
Sbjct:  104 AKFHNLRAVSRLLVAEFYGSTIWYPAQCLVELNRLQENFHGYGEDASRHLMLLATSVEDGSLAGFVDIDGREKRPGQT 181
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BLAST of mRNA_S-firma_M_contig9376.20344.1 vs. uniprot
Match: A0A835Z109_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z109_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 8.930e-20
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:    1 AVFPGLRAVSRLLVAEFYG-STLWYPAQCLMELNRLQENFHGHGEDADRHLMLLATSLDDGSLVGFVDVDGREKRP 225
            A +  L  VSRLLV EFYG +++WYPAQCL ELNRLQ NFH    D +RHLML+AT    G +VGFVD+D R+  P
Sbjct:   26 AEWRDLGPVSRLLVTEFYGGNSIWYPAQCLSELNRLQMNFHF---DRERHLMLVATEPAQGGIVGFVDIDARDVPP 98
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9376.20344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQA7_ECTSI1.910e-4084.62N-acetyltransferase domain-containing protein n=2 ... [more]
A0A835Z109_9STRA8.930e-2059.21N-acetyltransferase domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9376contigS-firma_M_contig9376:3810..4043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue2.8e-32
Seed eggNOG ortholog2880.D8LQA7
EggNOG free text desc.FR47-like protein
EggNOG OGs2E48C@1,2SB6B@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSecreted acetyltransferase (GNAT) domain protein
Ec32 orthologEc-26_005500.1
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828768.1873045-CDS-S-firma_M_contig9376:3809..40431622828768.1873045-CDS-S-firma_M_contig9376:3809..4043Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9376 3810..4043 +
1697105150.8610406-CDS-S-firma_M_contig9376:3809..40431697105150.8610406-CDS-S-firma_M_contig9376:3809..4043Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9376 3810..4043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9376.20344.1prot_S-firma_M_contig9376.20344.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9376 3810..4043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9376.20344.1

>prot_S-firma_M_contig9376.20344.1 ID=prot_S-firma_M_contig9376.20344.1|Name=mRNA_S-firma_M_contig9376.20344.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=78bp
AVFPGLRAVSRLLVAEFYGSTLWYPAQCLMELNRLQENFHGHGEDADRHL
MLLATSLDDGSLVGFVDVDGREKRPGQS
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mRNA from alignment at S-firma_M_contig9376:3810..4043+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9376.20344.1 ID=mRNA_S-firma_M_contig9376.20344.1|Name=mRNA_S-firma_M_contig9376.20344.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=234bp|location=Sequence derived from alignment at S-firma_M_contig9376:3810..4043+ (Sphaerotrichia firma Sfir_13m male)
GCTGTTTTTCCCGGCCTCAGGGCCGTATCGCGCCTCCTGGTTGCGGAGTT
CTACGGTTCGACCCTGTGGTACCCGGCCCAGTGCTTGATGGAGCTAAACC
GCCTGCAGGAGAACTTCCACGGGCACGGCGAGGACGCCGACCGCCACCTC
ATGCTGCTGGCCACCTCCCTGGACGACGGCAGCTTGGTGGGCTTCGTTGA
CGTCGACGGGAGGGAGAAGAGACCAGGACAGAGT
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Coding sequence (CDS) from alignment at S-firma_M_contig9376:3810..4043+

>mRNA_S-firma_M_contig9376.20344.1 ID=mRNA_S-firma_M_contig9376.20344.1|Name=mRNA_S-firma_M_contig9376.20344.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=468bp|location=Sequence derived from alignment at S-firma_M_contig9376:3810..4043+ (Sphaerotrichia firma Sfir_13m male)
GCTGTTTTTCCCGGCCTCAGGGCCGTATCGCGCCTCCTGGTTGCGGAGTT
CTACGGTTCGACCCTGTGGTACCCGGCCCAGTGCTTGATGGAGCTAAACC
GCCTGCAGGAGAACTTCCACGGGCACGGCGAGGACGCCGACCGCCACCTC
ATGCTGCTGGCCACCTCCCTGGACGACGGCAGCTTGGTGGGCTTCGTTGA
CGTCGACGGGAGGGAGAAGAGACCAGGACAGAGTGCTGTTTTTCCCGGCC
TCAGGGCCGTATCGCGCCTCCTGGTTGCGGAGTTCTACGGTTCGACCCTG
TGGTACCCGGCCCAGTGCTTGATGGAGCTAAACCGCCTGCAGGAGAACTT
CCACGGGCACGGCGAGGACGCCGACCGCCACCTCATGCTGCTGGCCACCT
CCCTGGACGACGGCAGCTTGGTGGGCTTCGTTGACGTCGACGGGAGGGAG
AAGAGACCAGGACAGAGT
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