mRNA_S-firma_M_contig937.20338.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig937.20338.1
Unique NamemRNA_S-firma_M_contig937.20338.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
[Close]
BLAST of mRNA_S-firma_M_contig937.20338.1 vs. uniprot
Match: A0A6H5KX02_9PHAE (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX02_9PHAE)

HSP 1 Score: 290 bits (741), Expect = 1.010e-91
Identity = 148/168 (88.10%), Postives = 159/168 (94.64%), Query Frame = 2 
Query:  209 ASQSSGLDGTRRDMIKTASAAVAGVLASTAVLPGAALAAAKPDPNRKVFTTAGGVKFIVLKEGTGPVARDGDFCVVEFTGFLPDGSVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGECLVKPGSEVRYDLQLKRVAPTP 712
            AS  +GLDGTRRD+I+TASAAVAG+L S+AVLP  ALAAAK +PNR+VFTT GGVKFIVLKEGTGPVARDGDFCVVEFTGFLPDG+VFDASNAPGRKPIAF+LG RQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNG+CLVKPG +VRYDLQLKRVAPTP
Sbjct:   45 ASPRAGLDGTRRDVIQTASAAVAGLL-SSAVLPAGALAAAKAEPNRRVFTTDGGVKFIVLKEGTGPVARDGDFCVVEFTGFLPDGAVFDASNAPGRKPIAFQLGKRQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGDCLVKPGMDVRYDLQLKRVAPTP 211
[Close]
BLAST of mRNA_S-firma_M_contig937.20338.1 vs. uniprot
Match: A0A6S9M8W0_HETAK (Peptidylprolyl isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9M8W0_HETAK)

HSP 1 Score: 182 bits (463), Expect = 7.070e-51
Identity = 98/196 (50.00%), Postives = 131/196 (66.84%), Query Frame = 2 
Query:  125 LTVCAFAVSDGFIGQVASPSSQQPMRMSASQSSGLDGTRRDMIKTASAAVAGVLASTAVLPGAALAAAKPDPNRKVFTTAGGVKFIVLKEGTGPVARDGDFCVVEFTGFLPDGSVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGECLVKPGSEVRYDLQLKRVAPTP 712
            LT   FA S G      +  S   M    +       TRR  + TA+++VA       V P  A A  KP+    + TT GGVKFI +K+G+GP  R GD C+V++TG+LPD +VFD+S+APGRKP+AFKLGARQVI GWEEVL  M+ GAEVQ VVPA +A+G KG+C+D+GECL+KP +++++D++LKRVA  P
Sbjct:    5 LTALLFAFSLGLAAGFQTTRSSVMMTNGLNSELSAKATRRIFLSTAASSVA-------VAPLVAAAKQKPE----IETTPGGVKFIFIKQGSGPNPRKGDICLVDYTGYLPDNTVFDSSDAPGRKPLAFKLGARQVIPGWEEVLPYMSVGAEVQAVVPAKLAYGSKGVCLDSGECLIKPDTDLKFDIKLKRVAIPP 189
[Close]
BLAST of mRNA_S-firma_M_contig937.20338.1 vs. uniprot
Match: A0A7S2UZW0_9STRA (Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZW0_9STRA)

HSP 1 Score: 170 bits (430), Expect = 4.130e-46
Identity = 74/122 (60.66%), Postives = 96/122 (78.69%), Query Frame = 2 
Query:  347 KVFTTAGGVKFIVLKEGTGPVARDGDFCVVEFTGFLPDGSVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGECLVKPGSEVRYDLQLKRVAPTP 712
            KV  T GGVKF+ +K+G GP  R GD+C+V++ G+L DG +FD+S  PGRKP+AFK G +QVI GWEEVL  M AG EV+MVVPA +A+G KGIC+++GECL++P  E++YDL LKRVAP P
Sbjct:   67 KVIETDGGVKFVEVKKGNGPRPRRGDYCIVDYVGYLSDGRIFDSSTGPGRKPLAFKFGGKQVIPGWEEVLPYMKAGGEVKMVVPASLAYGSKGICVEDGECLIQPDEELKYDLTLKRVAPPP 188
[Close]
BLAST of mRNA_S-firma_M_contig937.20338.1 vs. uniprot
Match: A0A7R9YBJ8_9STRA (Peptidylprolyl isomerase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBJ8_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.490e-39
Identity = 77/145 (53.10%), Postives = 104/145 (71.72%), Query Frame = 2 
Query:  281 VLASTAVLPGAALAAAKPDPNRKVFTTAGGVKFIVLKEGTGPVARDGDFCVVEFTGFLPDGSVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDN----GECLVKPGSEVRYDLQLKRVA 703
            VLA++  +P A++A        K++TT GGV+F V KEG+GP AR GDF VV+F G+  DG VFD+S   GRKP+AF++G  QVIKGWEEVL  +NAG+EVQM VP+ +AFG+KGIC++      ECLV PG  V+Y L ++++A
Sbjct:   44 VLAASCFVPAASVA-----KGPKIYTTDGGVEFAVTKEGSGPPARAGDFVVVDFIGYKADGKVFDSSTTQGRKPVAFRMGQGQVIKGWEEVLERVNAGSEVQMRVPSALAFGEKGICVETPQGKDECLVLPGETVKYQLFVRQIA 183
[Close]
BLAST of mRNA_S-firma_M_contig937.20338.1 vs. uniprot
Match: A0A835Z9V0_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9V0_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.230e-34
Identity = 80/207 (38.65%), Postives = 114/207 (55.07%), Query Frame = 2 
Query:   98 MRSRALEVLLTVCAFAVSDGFIGQVASPSSQQPMRMSASQSSGLDGTRRDMIKTASAAVAGVLASTAVLPGAALAAAKPDPNRKVFTTAGGVKFIVLKEGTGPVARDGDFCVVEFTGFLPDGSVFDASNAP--GRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGECLVKPGSEVRYDLQLKRVAPTP 712
            MRS        V   ++   F+   + PSS                 RR +I+T  AA     A  A+LP    AAA      KV+ T  G+ ++V KEG+GP  RDGD   +++ G+L +G  FD ++    GRKP  FKLGA+QVI  WEE++R MN GAE  +VVPA + +GDKG+C+ +GECLV P   +++ + L +VA +P
Sbjct:    1 MRSAVQLACTLVACLSLCSAFVSMSSGPSS-----------------RRQVIQTGVAA-----AGAALLPSVVSAAA--PAKAKVYETDNGILYVVRKEGSGPRPRDGDLVAIKYIGYLNNGKAFDINDGSVAGRKPTVFKLGAKQVIPAWEEIVRYMNPGAEYNIVVPAKLGYGDKGVCVGDGECLVPPNETLKFTIILDKVAISP 183
[Close]
BLAST of mRNA_S-firma_M_contig937.20338.1 vs. uniprot
Match: W7U710_9STRA (Peptidylprolyl isomerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U710_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.610e-34
Identity = 73/161 (45.34%), Postives = 103/161 (63.98%), Query Frame = 2 
Query:  248 MIKTASAAVAGVLASTAVLPGAALAAAKP------DPNRKVFTTAGGVKFIVLKEGTGPVARDGDFCVVEFTGFLPDGSVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGECLVKPGSEVRYDLQLKRVAPTP 712
            M+   + A  G  A+T   P   LA   P      +PN K+  T  GVK++ +K G G   R GD+ ++ + G L DG++FD  + PG+KP+AFK+GA+QVI G EE L  M AG E Q++VPAD+AFG+KG+C + GECLV P + V+Y++ LKRVA +P
Sbjct:   55 MLGAVALATGGSTATTLAWPLQVLAEESPVKVRKVNPN-KIRETPNGVKYVDVKVGEGESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVAVSP 214
[Close]
BLAST of mRNA_S-firma_M_contig937.20338.1 vs. uniprot
Match: A0A8J2WS77_9STRA (Peptidylprolyl isomerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WS77_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.500e-34
Identity = 69/153 (45.10%), Postives = 101/153 (66.01%), Query Frame = 2 
Query:  278 GVLASTAVLPGAALAAAKPDPNRKVFTTAGGVKFIVLKEGTGPVA-----------RDGDFCVVEFTGFLPDGSVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGECLVKPGSEVRYDLQLKRVA 703
            G  A T + P  ALA  K DPN  V TT GG K++++KEG+ P+            R   +  +++TGFLP+G VFD++   G KP++F+LG RQV+ G E+V+  M  G EVQ ++PA +A+GDKG+C D+GECL+KPG+ ++Y ++L RVA
Sbjct:   30 GGAALTTLAPRPALADVKVDPN-SVRTTKGGAKYVIVKEGSCPLIDPSGALGSCYPRPESYITIDYTGFLPNGQVFDSTEKKGGKPLSFRLGERQVVPGIEQVVAQMKPGEEVQALLPASLAYGDKGVCTDDGECLIKPGTNLKYFIRLNRVA 181
[Close]
BLAST of mRNA_S-firma_M_contig937.20338.1 vs. uniprot
Match: A0A7S2FVU9_9STRA (Peptidylprolyl isomerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FVU9_9STRA)

HSP 1 Score: 135 bits (340), Expect = 4.890e-33
Identity = 67/146 (45.89%), Postives = 97/146 (66.44%), Query Frame = 2 
Query:  299 VLPGAALAAAKPDPNRKVFTTAGGVKFIVLKEGTGPVA-----------RDGDFCVVEFTGFLPDGSVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGECLVKPGSEVRYDLQLKRVA 703
            +LPG A A     PN  + TT GGVK+ V+K+G  P A           + G  C+++FTGFLPDGSVFD++   G KP+AF+LG +QVI G E+V+  M  G EVQ  +P+++A+G KG+C  +GECL+ P ++++Y ++LKRVA
Sbjct:   62 ILPGVANAEQTISPNA-IRTTKGGVKYAVVKDGKCPTADPTGLAGSCDPKTGSLCIIDFTGFLPDGSVFDSTERKGGKPLAFRLGEKQVIIGIEQVVSQMRTGEEVQAKIPSELAYGTKGVCTADGECLIPPNTDLKYFIRLKRVA 206
[Close]
BLAST of mRNA_S-firma_M_contig937.20338.1 vs. uniprot
Match: A0A7S0T455_9RHOD (Peptidylprolyl isomerase n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T455_9RHOD)

HSP 1 Score: 134 bits (338), Expect = 1.880e-32
Identity = 67/159 (42.14%), Postives = 100/159 (62.89%), Query Frame = 2 
Query:  236 TRRDMIKTASAAVAGVLASTAVLPGAALAAAKPDPNRKVFTTAGGVKFIVLKEGTGPVARDGDFCVVEFTGFLPDGSVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGECLVKPGSEVRYDLQLKRVAPTP 712
            TRRD ++T  A++A V A     P  A+AA + +   K  T   GV   ++K+G+G   RDGD  +V++ G+L +G++FD +  PGRKP+AF+LG R+VI G E+ LR+M  G E  +VVP  +A+G++G+C     CL+ P   + YDL L RVA +P
Sbjct:   77 TRRDAMQTLFASLAVVTAHAIGAPSTAVAAGEKNAKHKFETLDSGVAIAMIKKGSGVSPRDGDLVIVDYVGYLSNGTIFDNTKTPGRKPLAFQLGQRKVIPGIEDALRVMKVGGESTIVVPPKLAYGERGVCFAEQGCLIPPNETLEYDLTLVRVAVSP 235
[Close]
BLAST of mRNA_S-firma_M_contig937.20338.1 vs. uniprot
Match: A0A7S2BVQ8_9STRA (Peptidylprolyl isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BVQ8_9STRA)

HSP 1 Score: 130 bits (326), Expect = 9.400e-32
Identity = 66/147 (44.90%), Postives = 96/147 (65.31%), Query Frame = 2 
Query:  305 PGAALAAAKPDPNRKVFTTAGGVKFIVLKEGTGPVA-----------RDGDFCVVEFTGFLPDGSVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGECLVKPGSEVRYDLQLKRVAPTP 712
            P AA A A  D +  V +T GG K++V+KEG  P A           R G  C++++TGFLP+G VFD++   G KP+AFKLG++QVI G E+V+  M  G EVQ ++P+ +A+G+KG+C D GECL+ P + ++Y ++LK VA  P
Sbjct:   10 PRAANADATVDASA-VRSTKGGAKYVVVKEGACPKADFTGLLGSCEPRTGSICIIDYTGFLPNGQVFDSTEKKGGKPLAFKLGSKQVIVGLEQVVSQMLPGEEVQALIPSALAYGEKGVCTDGGECLIDPNTNLKYYIKLKSVAAPP 155
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig937.20338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KX02_9PHAE1.010e-9188.10Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6S9M8W0_HETAK7.070e-5150.00Peptidylprolyl isomerase n=1 Tax=Heterosigma akash... [more]
A0A7S2UZW0_9STRA4.130e-4660.66Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japoni... [more]
A0A7R9YBJ8_9STRA1.490e-3953.10Peptidylprolyl isomerase n=1 Tax=Pinguiococcus pyr... [more]
A0A835Z9V0_9STRA1.230e-3438.65Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
W7U710_9STRA1.610e-3445.34Peptidylprolyl isomerase n=2 Tax=Monodopsidaceae T... [more]
A0A8J2WS77_9STRA2.500e-3445.10Peptidylprolyl isomerase n=1 Tax=Pelagomonas calce... [more]
A0A7S2FVU9_9STRA4.890e-3345.89Peptidylprolyl isomerase n=1 Tax=Dictyocha speculu... [more]
A0A7S0T455_9RHOD1.880e-3242.14Peptidylprolyl isomerase n=1 Tax=Erythrolobus mada... [more]
A0A7S2BVQ8_9STRA9.400e-3244.90Peptidylprolyl isomerase n=1 Tax=Florenciella parv... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig937contigS-firma_M_contig937:14244..17609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score289.3
Seed ortholog evalue1.4e-75
Seed eggNOG ortholog2880.D7FQE6
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0016020,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031976,GO:0031984,GO:0034357,GO:0036211,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
EggNOG free text desc.histone peptidyl-prolyl isomerization
EggNOG OGsCOG0545@1,KOG0552@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-01_006400.1
Exons5
Model size1737
Cds size618
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828767.696631-UTR-S-firma_M_contig937:14243..143401622828767.696631-UTR-S-firma_M_contig937:14243..14340Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig937 14244..14340 +
1697105150.5875041-UTR-S-firma_M_contig937:14243..143401697105150.5875041-UTR-S-firma_M_contig937:14243..14340Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig937 14244..14340 +
1622828767.763925-UTR-S-firma_M_contig937:16564..172781622828767.763925-UTR-S-firma_M_contig937:16564..17278Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig937 16565..17278 +
1697105150.6584585-UTR-S-firma_M_contig937:16564..172781697105150.6584585-UTR-S-firma_M_contig937:16564..17278Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig937 16565..17278 +
1622828767.7757483-UTR-S-firma_M_contig937:17301..176091622828767.7757483-UTR-S-firma_M_contig937:17301..17609Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig937 17302..17609 +
1697105150.668229-UTR-S-firma_M_contig937:17301..176091697105150.668229-UTR-S-firma_M_contig937:17301..17609Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig937 17302..17609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828767.7122314-CDS-S-firma_M_contig937:14340..145931622828767.7122314-CDS-S-firma_M_contig937:14340..14593Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig937 14341..14593 +
1697105150.6066175-CDS-S-firma_M_contig937:14340..145931697105150.6066175-CDS-S-firma_M_contig937:14340..14593Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig937 14341..14593 +
1622828767.7252417-CDS-S-firma_M_contig937:15704..158011622828767.7252417-CDS-S-firma_M_contig937:15704..15801Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig937 15705..15801 +
1697105150.6210291-CDS-S-firma_M_contig937:15704..158011697105150.6210291-CDS-S-firma_M_contig937:15704..15801Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig937 15705..15801 +
1622828767.7373645-CDS-S-firma_M_contig937:16072..161931622828767.7373645-CDS-S-firma_M_contig937:16072..16193Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig937 16073..16193 +
1697105150.6345696-CDS-S-firma_M_contig937:16072..161931697105150.6345696-CDS-S-firma_M_contig937:16072..16193Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig937 16073..16193 +
1622828767.7518785-CDS-S-firma_M_contig937:16417..165641622828767.7518785-CDS-S-firma_M_contig937:16417..16564Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig937 16418..16564 +
1697105150.6483793-CDS-S-firma_M_contig937:16417..165641697105150.6483793-CDS-S-firma_M_contig937:16417..16564Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig937 16418..16564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig937.20338.1prot_S-firma_M_contig937.20338.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig937 14341..16564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig937.20338.1

>prot_S-firma_M_contig937.20338.1 ID=prot_S-firma_M_contig937.20338.1|Name=mRNA_S-firma_M_contig937.20338.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=206bp
MRSRALEVLLTVCAFAVSDGFIGQVASPSSQQPMRMSASQSSGLDGTRRD
MIKTASAAVAGVLASTAVLPGAALAAAKPDPNRKVFTTAGGVKFIVLKEG
TGPVARDGDFCVVEFTGFLPDGSVFDASNAPGRKPIAFKLGARQVIKGWE
EVLRLMNAGAEVQMVVPADMAFGDKGICIDNGECLVKPGSEVRYDLQLKR
VAPTP*
back to top

mRNA from alignment at S-firma_M_contig937:14244..17609+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig937.20338.1 ID=mRNA_S-firma_M_contig937.20338.1|Name=mRNA_S-firma_M_contig937.20338.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3366bp|location=Sequence derived from alignment at S-firma_M_contig937:14244..17609+ (Sphaerotrichia firma Sfir_13m male)
GTTGTGTTTTTCACGATACCAGTCATCACTCACAACGCCATCCCGACTGT
CTGTGTGGAGGAACTATCCGCCTGCCTATCTAATCATCTGCTTCTCGATG
CGTTCTCGCGCCTTGGAAGTTCTGCTGACGGTTTGCGCCTTCGCTGTGAG
CGATGGCTTCATCGGCCAGGTTGCATCGCCTTCGTCACAGCAGCCGATGC
GGATGTCGGCATCACAATCATCAGGGTTGGACGGAACGAGGAGGGACATG
ATCAAAACAGCCAGTGCAGCAGTCGCTGGGGTGCTTGCATCTACAGCAGT
GCTGCCAGGAGCAGCCCTCGCAGCAGCAAAGCCAGACCCCAACCGCAAAG
GTGCGAAAGAGAGAGAGAGAGAGAGCCAGATGCGGCGGGTTTGTTCATGT
TAGGTCAACGGCGGTGCCGTTTTCTCACTCGCCTTGTGATGCACCTATGG
ACCCGCGACCAGAGAGCACAGCATCACCATGCCTTAGGGGTGCGTTAGCG
GGGGGTCTCTGATTTCTTGCGTAGGGGTTTCATACGTTTATAAACTGGCG
CAAAGTATACCCCTCTCTACAACTCAGCTTCCTGCTGACGAATCGGTGTA
CGTAGCACGTCTGATGCACTGACTCCTCGCGAATCTCACCAACCCATGCC
GAACATAAAAGACGCATTCTGCGTGGGCAAGGTTGTTGTGGTCCGTATGG
GAGGTTGGCGTTATCGAGTTAGTGCGGCGCCGAGCCGCTGGACACACACG
CGCAGCGTTGATCCTCCGTGTTCCGGATATCTGTATGTTCAAGAACCCCG
TCGGTATGTACACTGCTGCTGGAAAGTTCTCATCGTGGAACATGAACCCC
ACCCGGAGAGGACAATGACCAACCACCGCTGTGGCATAGGGATTTCTCCA
CGGGGCAGGCTGAATGAGATTCGCGATTACGTGCATCTGATCCTACATAC
ATATATCTTCGCGCAACGGCAATATGCACGCTACTGCTGCTGCACTACTA
ATACAATAGGCAACTCTCGTCTTGTTTTATACAAGCAGTGATGAACAGCA
GAAGTTTTGAAAGTGGACCTGTTTGTCTTCGAGAAACTGGACTAGAACAG
CACCGACAGAGTGCTCAATGTGAACTCTCGTTGAGAGGGTTACAAGTATT
GTAACTTCAAAACGTTTTCCCGGCACCTTGCGGTTGACTGGTGTGGGTGT
TATCGCCTTCGTTGCTGCTGGATGCTGAAGGTATTACAAATGATTTGAGT
ACTGTAGCAACACGACGGAATCGCCCCGGGACGAGCTCTTAAACAGGACA
CTATGTGGAACGAATGCGGGAACTTCAAGGGGAAGTAAAATGGCCTCCTA
CCCTCCGACGCACCCGCCTATGCTGTCACGATGCGGAGTAATACGTTGTC
TTGTTCACCGCTGGCGTGCTTGGACGCCCCCGTTTCGTTCCTCTCCTTAC
AAAACTTCCAGTTTTCACGACAGCCGGTGGGGTTAAATTCATCGTGCTCA
AGGAGGGCACCGGGCCGGTCGCAAGGGACGGCGACTTCTGCGTCGTCGAG
TTCACCGGGTGAGAGAGAAGATGTAGTCTAGGACGTGCACGGTCAAAATC
TTCACCGGACGAAAGAAACCTGACCCAGAGATAAAATGCGACCTGGTTGC
ATCCTATACTATATACAATACCAACCTGCCTACTGCAAAGCAAATCTTGA
TCTAAATACATGCTCGATGCCTTTCCCATGTCTTCATCTAAAGTAGGTAT
CCCAACGAAGGTTTTGTGTTTTCTTGCTTGGTCGCTTTTCTAACGTATTT
TGCTCTTATATTTCGGTGCGGGCGAGCAGGTTCTTGCCGGATGGGTCGGT
GTTCGACGCGAGCAACGCACCCGGTAGGAAGCCCATCGCCTTCAAGCTCG
GTGCACGGCAGGTCATCAAGGGATGGGAAGAAGTGCTGCGGCTGATGAAT
GTGAGAATTGTTCAGTGTTTGACAACATGTCTTCTCGTCCAAGCCGCTGG
TGAAGGTGACTGCAGCATTTGTCTGCGTCTATGGCAGCACAGTATTCTAA
TTTGTACATATTTTGTTCGGCAACCGTTGAGCTGTTGCGGCACACTATTG
CTTGCAACACACACGAACTCACCCCGCCCCCTCGCACATGTGCACGCACC
GGCGTATGACGAAAACCGCCTCAGGCCGGCGCCGAGGTGCAGATGGTCGT
TCCTGCAGACATGGCATTCGGCGATAAGGGCATATGCATCGACAACGGCG
AATGCCTTGTGAAGCCGGGCAGTGAAGTGCGCTACGACCTTCAGCTGAAG
CGTGTCGCGCCGACTCCGTAGGCTATCTAGAACAGTAGATCCGAGCTACA
GCTGTGGTTCACATTTCCTAGCGCTTCGAGCGATTCCAGGGACGGGAAGT
CGACAGGCAAGTTGGTGGAGCAATTCTGGGAAGGTCAGGTCTTGCCCTCA
ACAGTTTTGGTCTCTTCTCCTGGATGTGCTCTTGCGGGTAATAGTTTTAA
CTGCGGGCTTAGGTGCCGATTGCAGGACCACATCCGCCCGATTGGCGCAC
CTGTGCGAGTGGAGTTGTCGCACCGAGAGCACGGCTGTTCGACGAAGTCA
TGCACCCACGACGAAGCGACGCTGCAGCGAGTTGTGTTCTCCCAACAGTG
ACTGCGCGCCTACCCTGGGAGTGTGCGGTGTAGTCGGTTTTAATCGTGCA
AGTGTGTGTTCGATGTCATGGCTTTGTTGCGGTAGACACAAGGCATGAGC
GGGTAGGACACTGTCGATCTCACTGCAGATAACAGTAGATCACGGCAGAC
TAGAAGTTGGATAGAAGTGGGGCAGGAGGGATGTACCCTTTGCACTGCAG
GAAAGTGTCCTCTTTCAGGCACAAACGGTTTGATGTTTGAAGAGAGCATG
GGGCTGTTCTTTACATTCGAGGAGGTTATCAAGTCTTGGGGTAGCGCGCA
CATTTGTGTCACGGTCGGGTCCGTTGGGGTGGTCACAGATCTTGTGTCGC
CGATTTCTGTGAGATGCGCCTATCCGGCAACAGGAGTAGGAGGGGGAGTC
ATTCCTTTGTAGCACACTAGAACACAGACCAAGCCGTCACTAGTATAGGT
AGCAGAAAACAGAGCCATATTGCGAGTGTAAGTGTTCTTGTACTCGAAAT
ATCACAGCTCAGTCCAAGCTTTAATGTACCGTGGTCTTCGTTCAGACTCC
CGTCTTCGCTGTGTTGAAGCAGGAAGATTCAAGTTGAAACGCAAATGTGC
GGATCGTGCGTGGCCCCACACGGAAGACTCAGAGGGAACGGATATTCGTG
GAGTTATCGTGGTTCGACAAGTGCACGAGGAATTGCCCCGTCGTTTCGGG
CACCTGGCCTCTGCCT
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig937:14244..17609+

>mRNA_S-firma_M_contig937.20338.1 ID=mRNA_S-firma_M_contig937.20338.1|Name=mRNA_S-firma_M_contig937.20338.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1236bp|location=Sequence derived from alignment at S-firma_M_contig937:14244..17609+ (Sphaerotrichia firma Sfir_13m male)
ATGCGTTCTCGCGCCTTGGAAGTTCTGCTGACGGTTTGCGCCTTCGCTGT
GAGCGATGGCTTCATCGGCCAGGTTGCATCGCCTTCGTCACAGCAGCCGA
TGCGGATGTCGGCATCACAATCATCAGGGTTGGACGGAACGAGGAGGGAC
ATGATCAAAACAGCCAGTGCAGCAGTCGCTGGGGTGCTTGCATCTACAGC
AGTGCTGCCAGGAGCAGCCCTCGCAGCAGCAAAGCCAGACCCCAACCGCA
AAGATGCGTTCTCGCGCCTTGGAAGTTCTGCTGACGGTTTGCGCCTTCGC
TGTGAGCGATGGCTTCATCGGCCAGGTTGCATCGCCTTCGTCACAGCAGC
CGATGCGGATGTCGGCATCACAATCATCAGGGTTGGACGGAACGAGGAGG
GACATGATCAAAACAGCCAGTGCAGCAGTCGCTGGGGTGCTTGCATCTAC
AGCAGTGCTGCCAGGAGCAGCCCTCGCAGCAGCAAAGCCAGACCCCAACC
GCAAAGTTTTCACGACAGCCGGTGGGGTTAAATTCATCGTGCTCAAGGAG
GGCACCGGGCCGGTCGCAAGGGACGGCGACTTCTGCGTCGTCGAGTTCAC
CGGTTTTCACGACAGCCGGTGGGGTTAAATTCATCGTGCTCAAGGAGGGC
ACCGGGCCGGTCGCAAGGGACGGCGACTTCTGCGTCGTCGAGTTCACCGG
GTTCTTGCCGGATGGGTCGGTGTTCGACGCGAGCAACGCACCCGGTAGGA
AGCCCATCGCCTTCAAGCTCGGTGCACGGCAGGTCATCAAGGGATGGGAA
GAAGTGCTGCGGCTGATGAATGTTCTTGCCGGATGGGTCGGTGTTCGACG
CGAGCAACGCACCCGGTAGGAAGCCCATCGCCTTCAAGCTCGGTGCACGG
CAGGTCATCAAGGGATGGGAAGAAGTGCTGCGGCTGATGAATGCCGGCGC
CGAGGTGCAGATGGTCGTTCCTGCAGACATGGCATTCGGCGATAAGGGCA
TATGCATCGACAACGGCGAATGCCTTGTGAAGCCGGGCAGTGAAGTGCGC
TACGACCTTCAGCTGAAGCGTGTCGCGCCGACTCCGTAGGCCGGCGCCGA
GGTGCAGATGGTCGTTCCTGCAGACATGGCATTCGGCGATAAGGGCATAT
GCATCGACAACGGCGAATGCCTTGTGAAGCCGGGCAGTGAAGTGCGCTAC
GACCTTCAGCTGAAGCGTGTCGCGCCGACTCCGTAG
back to top