mRNA_S-firma_M_contig9366.20334.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9366.20334.1
Unique NamemRNA_S-firma_M_contig9366.20334.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9366.20334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9366contigS-firma_M_contig9366:415..1070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size656
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9366.20334.1prot_S-firma_M_contig9366.20334.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9366 580..951 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828767.091444-UTR-S-firma_M_contig9366:414..5791622828767.091444-UTR-S-firma_M_contig9366:414..579Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9366 415..579 +
1697105150.1991117-UTR-S-firma_M_contig9366:414..5791697105150.1991117-UTR-S-firma_M_contig9366:414..579Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9366 415..579 +
1622828767.1178575-UTR-S-firma_M_contig9366:951..10701622828767.1178575-UTR-S-firma_M_contig9366:951..1070Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9366 952..1070 +
1697105150.2297702-UTR-S-firma_M_contig9366:951..10701697105150.2297702-UTR-S-firma_M_contig9366:951..1070Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9366 952..1070 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828767.105164-CDS-S-firma_M_contig9366:579..9511622828767.105164-CDS-S-firma_M_contig9366:579..951Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9366 580..951 +
1697105150.2126215-CDS-S-firma_M_contig9366:579..9511697105150.2126215-CDS-S-firma_M_contig9366:579..951Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9366 580..951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9366.20334.1

>prot_S-firma_M_contig9366.20334.1 ID=prot_S-firma_M_contig9366.20334.1|Name=mRNA_S-firma_M_contig9366.20334.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=124bp
MRPDENETHSNPTRPFTVSLIAHRYRRTKSRNRRKKRTVQYGGTTAEKDP
NPFARWIGPKSSDLDPRVHPPNTIPILSGLQRGEHLFLPRKPVSLSCRHQ
IGPEIGTLTRNGVSSTWEDMKIS*
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mRNA from alignment at S-firma_M_contig9366:415..1070+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9366.20334.1 ID=mRNA_S-firma_M_contig9366.20334.1|Name=mRNA_S-firma_M_contig9366.20334.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=656bp|location=Sequence derived from alignment at S-firma_M_contig9366:415..1070+ (Sphaerotrichia firma Sfir_13m male)
CGGCGGCGGCGGCGGCGGCGGGAAAAGGCGGGGAAAGAGAGCGTCGACAG
AGGGGGAGAAGGACGTCAAAGGCGGGGGAGCGACAGAGATAAAGGTAGAG
CGGGCAAACGAGAGAGACTTGGAGCATGCACGAGGCGTGGCTTCTGGAGC
ACCTGCTGCAACGACATGAGACCAGACGAAAACGAGACGCACTCGAACCC
AACCCGGCCTTTCACTGTGTCGCTCATTGCTCATCGCTACCGGAGAACCA
AGAGCCGCAACCGGCGCAAGAAACGCACGGTACAGTACGGCGGTACCACG
GCAGAAAAGGACCCTAATCCTTTCGCGCGTTGGATTGGTCCAAAATCATC
GGACTTAGACCCGCGCGTTCACCCACCCAACACCATTCCCATTTTGAGCG
GGTTGCAGCGAGGCGAGCACCTTTTCCTCCCACGCAAGCCGGTTTCTTTA
TCGTGTCGGCACCAGATTGGCCCAGAGATCGGCACGTTGACGCGCAACGG
TGTATCAAGCACATGGGAAGACATGAAAATCTCGTAAGCTGCAAAGCCTT
TTTGCCGGCAAGCGCGCGCTCGCGCCCCAGCAGGCACACGCACCGCTGCA
CTTGCTTTTTCTCACCCTTGGCAACATCTGCAACGAGGTTACGGCGAGTC
CTGTCT
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Coding sequence (CDS) from alignment at S-firma_M_contig9366:415..1070+

>mRNA_S-firma_M_contig9366.20334.1 ID=mRNA_S-firma_M_contig9366.20334.1|Name=mRNA_S-firma_M_contig9366.20334.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=744bp|location=Sequence derived from alignment at S-firma_M_contig9366:415..1070+ (Sphaerotrichia firma Sfir_13m male)
ATGAGACCAGACGAAAACGAGACGCACTCGAACCCAACCCGGCCTTTCAC
TGTGTCGCTCATTGCTCATCGCTACCGGAGAACCAAGAGCCGCAACCGGC
GCAAGAAACGCACGGTACAGTACGGCGGTACCACGGCAGAAAAGGACCCT
AATCCTTTCGCGCGTTGGATTGGTCCAAAATCATCGGACTTAGACCCGCG
CGTTCACCCACCCAACACCATTCCCATTTTGAGCGGGTTGCAGCGAGGCG
AGCACCTTTTCCTCCCACGCAAGCCGGTTTCTTTATCGTGTCGGCACCAG
ATTGGCCCAGAGATCGGCACGTTGACGCGCAACGGTGTATCAAGCACATG
GGAAGACATGAAAATCTCGTAAATGAGACCAGACGAAAACGAGACGCACT
CGAACCCAACCCGGCCTTTCACTGTGTCGCTCATTGCTCATCGCTACCGG
AGAACCAAGAGCCGCAACCGGCGCAAGAAACGCACGGTACAGTACGGCGG
TACCACGGCAGAAAAGGACCCTAATCCTTTCGCGCGTTGGATTGGTCCAA
AATCATCGGACTTAGACCCGCGCGTTCACCCACCCAACACCATTCCCATT
TTGAGCGGGTTGCAGCGAGGCGAGCACCTTTTCCTCCCACGCAAGCCGGT
TTCTTTATCGTGTCGGCACCAGATTGGCCCAGAGATCGGCACGTTGACGC
GCAACGGTGTATCAAGCACATGGGAAGACATGAAAATCTCGTAA
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