mRNA_S-firma_M_contig9362.20331.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9362.20331.1
Unique NamemRNA_S-firma_M_contig9362.20331.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig9362.20331.1 vs. uniprot
Match: A0A6H5KZD6_9PHAE (Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZD6_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 2.220e-96
Identity = 185/336 (55.06%), Postives = 212/336 (63.10%), Query Frame = 3
Query:    3 YRLGYVAVNASAVLVVGNVPGTFLWDPEAGETADGEAFAIFLAAVAISVFAFLMIQGSNPGYLSTDRNMGGFGDLAEGEDAELLVPEAVAVTGTESQRRHRADAEDPGAARQQXXXXXXXXXXXXRYPAPTEETRRTERPKGGGVGGSINSSGSVDSSDRCVSGGGGGLPRRGDFVRCARCDGLQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLVEAVRITASGFSETDG-------SPDRGE---------TSIPGRWASRNASALVASLCLWPCLVLAVVLLGTHTWMATSSLTSYECLKGGGRGSDSLSYLEVI 962
            YR GY+AVN +AV+++GN+PGTFLWD EAGE  DGE F++FLAAVA+S+ AFL +QGSNPGYL   R+  G G     E+   L  E V        + H  D E    A +                 P EE + TE   G     SIN++         V GG  G   R DFVRC RC  ++VPLRSHHCR CGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSL EA+RIT SGFS+ DG       SP  GE         T+  G WASRNA AL  S CLWPC  L+VVLL TH+WMA SSLTSYECL+GGGRG DSL YLEV+
Sbjct:   17 YRSGYLAVNGAAVVLIGNIPGTFLWDQEAGEAVDGETFSVFLAAVALSILAFLAVQGSNPGYLFVQRDWVGDGGTEAEEETTCLTAEPV------QHQSHTHDQEKGEEAGEARLLTSTITSRDHASKKPVEEGQPTE---GNEKSSSINTA--------SVVGGFEGSLTRPDFVRCRRCQDMEVPLRSHHCRACGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLAEAIRITMSGFSD-DGDRYSFTLSPAVGEAGATTPTESTTAEGSWASRNALALACSCCLWPCFALSVVLLVTHSWMAISSLTSYECLRGGGRGPDSLEYLEVL 334          
BLAST of mRNA_S-firma_M_contig9362.20331.1 vs. uniprot
Match: D7FP12_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP12_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 9.310e-51
Identity = 119/245 (48.57%), Postives = 143/245 (58.37%), Query Frame = 3
Query:    3 YRLGYVAVNASAVLVVGNVPGTFLWDPEAGETADGEAFAIFLAAVAISVFAFLMIQGSNPGYLSTDRNMGGFGDLAEGEDAELLVPEAVAVTGT-ESQRRHRADAEDPGAARQQXXXXXXXXXXXXRYPA-PTEETRRTERPKGGGVGGSINSSGSVDSSDRCVSGGGGGLPRRGDFVRCARCDGLQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLVEAVRITASG 731
            YR GY+AVN +AV+++GN+PGTFLWD EAGE  DGEAF++FLAAV +S+ AFL +QGSNPGYLS  R+    GD   G +AE    E   +T T E Q       E+ G    +              P  P EE + TE           N   S+ ++   V G  G L R  DFVRC RC  ++VPLRSHHCR+CGRCVATFDXXXXXXXXXXGERNHCRFWW   + T         T  G
Sbjct:   17 YRSGYLAVNGAAVVLIGNIPGTFLWDQEAGEAVDGEAFSVFLAAVVLSILAFLAVQGSNPGYLSVQRDW--VGD--SGTEAE---EETTCLTATPEVQHHSHPHDEEKGEQSGEARLLTSTITSSDHAPKKPVEEGQPTEG----------NDKSSIINTPSVVGGFEGSLTRP-DFVRCRRCQDMKVPLRSHHCRECGRCVATFDXXXXXXXXXXGERNHCRFWWEQESSTCRSARGFWATCGG 243          
BLAST of mRNA_S-firma_M_contig9362.20331.1 vs. uniprot
Match: A0A6U5KJH5_9STRA (Palmitoyltransferase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5KJH5_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.680e-23
Identity = 97/334 (29.04%), Postives = 148/334 (44.31%), Query Frame = 3
Query:   15 YVAVNASAVLVVGNVPGTFLW------DPEAGETADGEAFAIFLAAVAISVFAFLMIQGSNPGYL--STDRNMG---GFGDLA---EGEDAELLVPEAVAVT--GTESQRRHRADAEDPGAARQQXXXXXXXXXXXXRYPAPTEETRRTERPKGGGVGGSINSSGSVDSSDRCVSGGGG-GLPRRGDFVR--CARCDGLQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLVEAVRITASGFSETDGSPDRGETSIPGRWASRNASALV--ASLCLWPCLVLAVVLLGTHTWMATSSLTSYECLKGGGRGSDSLSYL 953
            Y+++ A  V++  +VP T LW      +P++ ET + E  A  +    + + +FL++ GS+PGYL  +T   +G   G G L     G+D  L     + ++  G+ S    R     P  +                 P  +++++ +  P       ++  S    S  R V       LP      R  C RC     PLR+HHC+ C RCVATFD          GERNHCRFWWFL  Q +  +  + I  S      G  D  E     R+   N   LV   S+ LW  ++ A+++  TH++ A S+ TS+EC    G+G   + YL
Sbjct:   28 YLSLVAVTVILTSSVPRTRLWNGGDIGEPQSFETLNNETLADLVFTTLLLIVSFLLLNGSDPGYLDIATMEELGKIDGIGLLGGRISGDDDGLHPESGIEMSEIGSSSTNPDRHCLLVPSVS----SVPTASLEFESVVPISSDQSQPSTAPGASRRPAAVRDSIRARSDRRRVMRAEALALPPHASTRRGVCDRCH-FAPPLRAHHCKHCDRCVATFDHHCFLIGTCIGERNHCRFWWFLTFQLLGFMTCISILNSRVDGYRGGDDTQEYVKEDRFFFFNDQLLVIVVSIYLWALMITAMIMWVTHSFFAISNYTSFEC----GKGPAYIDYL 352          
BLAST of mRNA_S-firma_M_contig9362.20331.1 vs. uniprot
Match: A0A2R5GTB8_9STRA (Palmitoyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTB8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.420e-20
Identity = 92/318 (28.93%), Postives = 135/318 (42.45%), Query Frame = 3
Query:    3 YRLGYVAVNASAVLVVGNVPGTFLWDPEAGETADGEAFAIFLAAVAISVFAFLMIQGSNPGYLSTDRNMGGFGDLAEGEDAELLVPEAVAVTGTESQRRHRADAEDPGAARQQXXXXXXXXXXXXRYPAPTEETRRTERPKGGGVGGSINSSGSVDSSDRCVSGGGGGLPRRGDFVRCARCDGLQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLVEAVRITASGFSETDGSPDRGETSIPGRWASRNASALVASLCLWPCLVLAVVLLGTHTWMATSSLTSYECLKGGGRGSDSLSYLE 956
            YR  Y+ + A+    V   P  FL D  A     G+  A+ +  V +++ +F+ +QGSNPG++  D  M G    A+GE A  L P     + TE    H        +AR+                        +E  +G  +   +    ++D S              G   R       +VP+R+  CR   R VAT+D          GE+NHCRFWWFLL  T+ L    R+  SGF +T     + E    G W   N  AL+  L +   L     LL  HT++A +++TSYE L+     +D +SYLE
Sbjct:   66 YRAAYLVIIAALCAAVLTTPRIFLRD--ANGDLQGDDLAMLILLVLLALGSFMAVQGSNPGFIGLDH-MRGSHIGADGERANTLAPNEFVTSVTEL---HSVAL----SAREASPDQILLGSPSRSVNDDXXXXXDSEASEGFVL--DVEPDEALDES-------------LGHVQRS------RVPMRAKFCRNSQRYVATYDHYCGVLGTCIGEKNHCRFWWFLLTHTLGLAYMTRVVQSGFQDT-----KAEV---GTWLDHNTHALLVFLVVVILLCAVGSLLLFHTFLACAAMTSYEFLR-----ADKISYLE 339          
BLAST of mRNA_S-firma_M_contig9362.20331.1 vs. uniprot
Match: A0A6T7JK16_9STRA (Palmitoyltransferase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7JK16_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 6.420e-19
Identity = 102/340 (30.00%), Postives = 142/340 (41.76%), Query Frame = 3
Query:    6 RLGYVAVNASAVLVVGNVPGTFLW--DPEAGETADGEAFAIFLAAVAISVFAFLMIQGSNPGYLSTDRNMGGFGDLAEGEDAELLVPEAVAVTGTESQRRHRAD-------AEDPGAARQQXXXXXXXXXXXXRYPAPTEETRRTERPKGGGVGGSINSSGSVDSSDRCVSGGGGGLPRRGDFVR-------------CARCDGLQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLVEAVRIT-ASGFSETDGSPDRGETSIPGRWASRNASALVASLCLWPCLVLAVVLLGTHTWMATSSLTSYECLKGGGRGSDSLSYLE 956
            RL Y+  +  AV +  N PGT LW  + E+  + D E     +    +     L++QGS+PGYL+ D        L + +   LL        GT S      D        E     R                 +P+       R   G      +  G++   D         LP                    C RC     PLRSHHC+ C  CVAT  XXXXXXXXXXGERNHCRFWWFL  Q +  +E  RI  +S +          E+++P  W   N   +   L L+P  ++ ++L   HT+ AT+++T++EC    GR S  + YLE
Sbjct:   59 RLIYLGTSLLAVTLSYNAPGTKLWVQNGESLSSVDRETLVELVVVFVLVWVTLLLVQGSDPGYLTADI----VSQLCKEDGISLL-----GYDGTPSMETEEGDQLSLTPIVEMTTRRRSNHVRTDKAEHSTNLVASPSSPGLNESRDGNGLENWGTSQEGTLSPLDI--------LPXXXXXXXXXXXXXXXRRRKVCQRCQ-FAPPLRSHHCKICDTCVATXXXXXXXXXXXXGERNHCRFWWFLSMQMLGFLECCRIVHSSSYGSFHLFHVSKESNVP--WM-HNLIVIAGKLYLYPLTLITIMLWIAHTFFATANMTTFEC----GRSSKHVDYLE 373          
BLAST of mRNA_S-firma_M_contig9362.20331.1 vs. uniprot
Match: A0A024TQD3_9STRA (Palmitoyltransferase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TQD3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.380e-18
Identity = 64/141 (45.39%), Postives = 83/141 (58.87%), Query Frame = 3
Query:  534 CARCDGLQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLVEAVRITASGFSETDGSPDRGETSIPGRWASRNASALVASLCLWPCLVLAVVLLGTHTWMATSSLTSYECLKGGGRGSDSLSYLE 956
            C  C  LQ PLR++HC  C RCVATFDXXXXXXXXXX E+NHCRFWWFLL  ++ +   + +  SGF           TS+ G W   N+ ALVA L  +     A  L G HT++  ++ T+ E     G+G D+L+YL 
Sbjct:   57 CTVCQ-LQPPLRAYHCAFCNRCVATFDXXXXXXXXXXXEKNHCRFWWFLLLTSLEVYSCLGVVHSGFHSA--------TSLQG-WLQLNSIALVAVLFFYTFAATAYSLCGFHTFLMLTNSTTREL----GKGPDNLAYLR 183          
BLAST of mRNA_S-firma_M_contig9362.20331.1 vs. uniprot
Match: A0A5A8D737_CAFRO (Palmitoyltransferase n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D737_CAFRO)

HSP 1 Score: 95.1 bits (235), Expect = 7.830e-18
Identity = 101/351 (28.77%), Postives = 139/351 (39.60%), Query Frame = 3
Query:    6 RLGYVAVNASAVLVVGNVPGTFLWDPEAGETADGEAFAIFLAAVAISVFAFLMIQGSNPGYLSTDRNMGGFGD---LAEGEDAEL-LVPEAVAVTGTES---------QRRHRAD---------------------AEDPGAARQQXXXXXXXXXXXXRYP-------APTEETRRTERPKGGGVGGSINSSGSVDS--SDRCVSGGGGGLPRRGDFVRCARCDGLQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLVEAVRITASGFSETDGSPDRGETSIPGRWASRNASALVASLCLWPCLVLAVVLLGTHTWMATSSLTSYECLKGGGR 929
            RL Y A  +    +V ++P + LW  E    ADG     F+  +A S   +L +QGSNPGY+  +       D   L +GED+ L +  E +  +  E+          RR R                       A+ PGA  Q+              P       A   E   TE      V   +    + DS  +D  +   G   P R         +GL  P+R+H C+   R V  FD          GERNHCRFWWFLLAQ+ ++  A+ IT S F          + +  G W S N      +L LW  L  A  +L  H+W+A +  TSYE  KG  R
Sbjct:   52 RLCYFATCSVFAYLVWSMPHSTLWTEEGN--ADGGVTFAFVFWLAASAATYLAVQGSNPGYIEDEAMSAAEADARGLLKGEDSRLGMAAEMIGDSDEEALTSAPRTARSRRQRPGYSPRGASAGAASXXXXEAVPAAQQPGATLQRGGRAAPPRRDAFGAPLGARPRAAELAELGLTEEEIEAEVDAEVKRRLASDSWLNDEQLEAAGPAPPPR---------EGL--PVRAHFCKVSQRYVHGFDHYCGVLATPVGERNHCRFWWFLLAQSATIGAALGITHSAFQF--------QPTYTGWW-SANGGVFALALTLWILLAFAGGMLLLHSWLAITGSTSYELFKGPRR 380          
BLAST of mRNA_S-firma_M_contig9362.20331.1 vs. uniprot
Match: A0A6G0W546_9STRA (Palmitoyltransferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W546_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.410e-17
Identity = 50/141 (35.46%), Postives = 70/141 (49.65%), Query Frame = 3
Query:  534 CARCDGLQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLVEAVRITASGFSETDGSPDRGETSIPGRWASRNASALVASLCLWPCLVLAVVLLGTHTWMATSSLTSYECLKGGGRGSDSLSYLE 956
            C  C  L+ PLR++HC  C RCVATFD          GE+NHCRFWWFL   ++ +   + I  SG+                 W + N+ ALVA+L  W     A  L G HT++  ++ T+ E     G+G + L+YL 
Sbjct:  156 CTTCI-LEPPLRAYHCGYCNRCVATFDHHCFCIGTCIGEKNHCRFWWFLFLTSIEVYTCIGIVHSGYQSAP---------TLSAWLNANSLALVATLFFWCFAFTAYSLFGFHTFLMLTNSTTREL----GKGPEKLAYLR 282          
BLAST of mRNA_S-firma_M_contig9362.20331.1 vs. uniprot
Match: A0A7S1UKH9_9STRA (Palmitoyltransferase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKH9_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.760e-16
Identity = 56/144 (38.89%), Postives = 69/144 (47.92%), Query Frame = 3
Query:  534 CARCDGLQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLVEAVRITASGFSETDGSPDRGETSIPGRWASRNASALVASLCLWPCLVLAVVLLGT---HTWMATSSLTSYECLKGGGRGSDSLSYLE 956
            C  C G   PLR+HHCR C RCVATFD XX       GERN CRFWW+L  Q  +L  AV I A            G     G WA  NA  L+ S  +    ++ + + G     TW+A ++ T YE      RG + L YL 
Sbjct:   19 CGAC-GFAPPLRAHHCRTCDRCVATFDHXXNCIGTCVGERNACRFWWWLFFQCAALWCAVGIAAEAVVNV------GRVKSWGAWADTNAGPLILSFLVG---LIGLYVFGVFCFQTWLAATTSTGYEVY----RGPEGLKYLR 148          
BLAST of mRNA_S-firma_M_contig9362.20331.1 vs. uniprot
Match: T0RRY6_SAPDV (UDENN domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RRY6_SAPDV)

HSP 1 Score: 91.7 bits (226), Expect = 2.350e-16
Identity = 62/140 (44.29%), Postives = 80/140 (57.14%), Query Frame = 3
Query:  534 CARCDGLQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLVEAVRITASGFSETDGSPDRGETSIPGRWASRNASALVASLCLWPCLVLAVVLLGTHTWMATSSLTSYECLKGGGRGSDSLSYL 953
            CA C  L+ PLRS+HC  C RCVATFD XXXXXXXXXGERNHCRFWWF+L   + +   + I  S F          E ++   W   N  AL A++  W   +L   LLG HT++  ++ T+ E     G+G + L YL
Sbjct:  149 CAACS-LEPPLRSYHCPFCNRCVATFDHXXXXXXXXXGERNHCRFWWFILLSCMEVSTCLGIIHSSFHT--------EATLQ-LWLRANGMALTAAMFFWFFALLTYSLLGFHTFLMLTNSTTREL----GKGPEKLKYL 274          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9362.20331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZD6_9PHAE2.220e-9655.06Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D7FP12_ECTSI9.310e-5148.57Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6U5KJH5_9STRA2.680e-2329.04Palmitoyltransferase n=1 Tax=Corethron hystrix Tax... [more]
A0A2R5GTB8_9STRA4.420e-2028.93Palmitoyltransferase n=1 Tax=Hondaea fermentalgian... [more]
A0A6T7JK16_9STRA6.420e-1930.00Palmitoyltransferase n=1 Tax=Attheya septentrional... [more]
A0A024TQD3_9STRA2.380e-1845.39Palmitoyltransferase n=1 Tax=Aphanomyces invadans ... [more]
A0A5A8D737_CAFRO7.830e-1828.77Palmitoyltransferase n=1 Tax=Cafeteria roenbergens... [more]
A0A6G0W546_9STRA1.410e-1735.46Palmitoyltransferase n=1 Tax=Aphanomyces euteiches... [more]
A0A7S1UKH9_9STRA1.760e-1638.89Palmitoyltransferase n=1 Tax=Phaeomonas parva TaxI... [more]
T0RRY6_SAPDV2.350e-1644.29UDENN domain-containing protein n=1 Tax=Saprolegni... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9362contigS-firma_M_contig9362:487..3802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue1.7e-20
Seed eggNOG ortholog2880.D7FP12
Preferred namePFA4
KEGG koko:K18932
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006464,GO:0006497,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016409,GO:0016740,GO:0016746,GO:0016747,GO:0018345,GO:0019538,GO:0031224,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1314@2759
EC2.3.1.225
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons6
Model size1127
Cds size804
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9362.20331.1prot_S-firma_M_contig9362.20331.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9362 648..3640 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828766.719561-UTR-S-firma_M_contig9362:486..6471622828766.719561-UTR-S-firma_M_contig9362:486..647Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9362 487..647 +
1697105149.9546204-UTR-S-firma_M_contig9362:486..6471697105149.9546204-UTR-S-firma_M_contig9362:486..647Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9362 487..647 +
1622828766.816759-UTR-S-firma_M_contig9362:3640..38021622828766.816759-UTR-S-firma_M_contig9362:3640..3802Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9362 3641..3802 +
1697105150.0482807-UTR-S-firma_M_contig9362:3640..38021697105150.0482807-UTR-S-firma_M_contig9362:3640..3802Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9362 3641..3802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828766.73191-CDS-S-firma_M_contig9362:647..6561622828766.73191-CDS-S-firma_M_contig9362:647..656Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9362 648..656 +
1697105149.96966-CDS-S-firma_M_contig9362:647..6561697105149.96966-CDS-S-firma_M_contig9362:647..656Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9362 648..656 +
1622828766.7439404-CDS-S-firma_M_contig9362:804..9011622828766.7439404-CDS-S-firma_M_contig9362:804..901Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9362 805..901 +
1697105149.9889834-CDS-S-firma_M_contig9362:804..9011697105149.9889834-CDS-S-firma_M_contig9362:804..901Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9362 805..901 +
1622828766.7562099-CDS-S-firma_M_contig9362:1135..14251622828766.7562099-CDS-S-firma_M_contig9362:1135..1425Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9362 1136..1425 +
1697105149.9992962-CDS-S-firma_M_contig9362:1135..14251697105149.9992962-CDS-S-firma_M_contig9362:1135..1425Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9362 1136..1425 +
1622828766.7693348-CDS-S-firma_M_contig9362:1814..19301622828766.7693348-CDS-S-firma_M_contig9362:1814..1930Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9362 1815..1930 +
1697105150.011906-CDS-S-firma_M_contig9362:1814..19301697105150.011906-CDS-S-firma_M_contig9362:1814..1930Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9362 1815..1930 +
1622828766.7836525-CDS-S-firma_M_contig9362:2600..26891622828766.7836525-CDS-S-firma_M_contig9362:2600..2689Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9362 2601..2689 +
1697105150.0242083-CDS-S-firma_M_contig9362:2600..26891697105150.0242083-CDS-S-firma_M_contig9362:2600..2689Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9362 2601..2689 +
1622828766.8008628-CDS-S-firma_M_contig9362:3437..36401622828766.8008628-CDS-S-firma_M_contig9362:3437..3640Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9362 3438..3640 +
1697105150.033341-CDS-S-firma_M_contig9362:3437..36401697105150.033341-CDS-S-firma_M_contig9362:3437..3640Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9362 3438..3640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9362.20331.1

>prot_S-firma_M_contig9362.20331.1 ID=prot_S-firma_M_contig9362.20331.1|Name=mRNA_S-firma_M_contig9362.20331.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=268bp
MIQGSNPGYLSTDRNMGGFGDLAEGEDAELLVPEAVAVTGTESQRRHRAD
AEDPGAARQQLLGGTAAASSSDRYPAPTEETRRTERPKGGGVGGSINSSG
SVDSSDRCVSGGGGGLPRRGDFVRCARCDGLQVPLRSHHCRQCGRCVATF
DHHCKMIGTCIGERNHCRFWWFLLAQTVSLVEAVRITASGFSETDGSPDR
GETSIPGRWASRNASALVASLCLWPCLVLAVVLLGTHTWMATSSLTSYEC
LKGGGRGSDSLSYLEVI*
back to top

mRNA from alignment at S-firma_M_contig9362:487..3802+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9362.20331.1 ID=mRNA_S-firma_M_contig9362.20331.1|Name=mRNA_S-firma_M_contig9362.20331.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3316bp|location=Sequence derived from alignment at S-firma_M_contig9362:487..3802+ (Sphaerotrichia firma Sfir_13m male)
GGTATCGGCTGGGGTACGTCGCGGTGAACGCGTCGGCCGTTCTTGTCGTC GGCAACGTTCCCGGAACTTTCCTGTGGGATCCGGAGGCCGGCGAGACGGC CGACGGGGAGGCGTTCGCCATTTTCTTGGCGGCCGTAGCGATCTCCGTCT TCGCCTTCCTCATGATACAGGTTTGTTGAAGTGTCGCCGGTGCCCACGGG CTAGGCGTCTCGCGCGAGAGCTGTCTCATCTGCGTAGCACATGGGGGGAA CGGGGAAAGAAACCCTCCTAGAGACCCCTGGAAGAAACAACGCCCACGCG TCTCCTCTCTTGCCGCAGGGATCTAACCCTGGGTACCTGAGCACCGACAG GAATATGGGGGGCTTTGGCGACCTCGCCGAAGGAGAAGACGCCGAGCTTC TGGTGCCGGAAGCAGGTTTGCCAAGTTTTTTTCGGTCGTGATCGCCGCTC TGACAATGCCCCGAGCGACTGACTACGTACGTTAGGCAAGCAGCCAGGGG CACCCACCAGCGGCTCGGTGTACGGCCTCTTTGGCGACACCCACGTCTTG CCAACGGCCGAGTGATGGAACAGCAGTGGCAAGCAACGAGTGGTCGCCTT TTTCCCGCCCCAACGCTCCCGCCGCGCGCTCATGGTTGTTGCACAGCAGT AGCAGTGACTGGGACAGAATCACAGCGCCGTCACAGAGCGGATGCAGAAG ACCCCGGCGCCGCGAGACAGCAGCTCTTGGGGGGCACGGCGGCGGCGTCG AGCAGCGACCGGTACCCTGCTCCAACGGAAGAGACAAGGAGGACGGAAAG GCCAAAGGGCGGCGGGGTCGGTGGTAGCATCAACAGCAGTGGCAGCGTTG ACAGCAGTGACCGCTGCGTCAGCGGCGGCGGCGGCGGACTGCCTCGGAGG GGCGACTTCGTCCGGTGCGCTCGCTGCGACGGCCTGCAGGTGTGAAGAAC TCACCTGGTAAAAAAGAAAACGTTGCTTCGAGAAAACAGTGGTGAAGAGC CCAACTTGTCCAGTATTCTGTATTTTCTTGTTTTGCGCAGTTGTGCGGCT TACAGTACAGGGAAAAAAAGAAAGGCGTTGCTTGCGGAAGCCAAGGCAAA AGTCCAAACACCTACAAACATACGTGCGCACACGCGCGAACCCGTTTGCA ATCGTTTTACATACAATCAGCACGGCGTTGGCGTAACCAACTGCTTCTCT TCGCGGGATGCGTAGGCACACGAACGGCGTCGTTGGCACGAGGTAGCCTC CAGGCACACACGCCCCCCTTCTATAGAAGAGTCACTCGCGGACACTTCAC ACGCCTGTCCTGATGCTGGAACTCCCAGGTCCCGCTGCGGTCGCACCACT GCCGGCAGTGCGGGCGGTGCGTGGCGACGTTCGACCACCACTGCAAGATG ATCGGGACCTGCATCGGCGAAAGAAACCACTGCCGGTTCTGGTGGTGAGT AAGTAGGGTACAGACGAGGTTTTGGGCGGGGGCTGGGCAGAGCTACATAC CGCCGGCGACCGGCCGGCCGAGCGCTAGGGGTAGGGTGTTGAAAGCGGGA GCGTGAGCGCTAGGGGTAGGGTGTTGAAAATGAAAGCGTGGGCGCTAGGG GTAGGGTGTTGAAAGCGAAAGCGTGAGCGCTAGGGGTAGGGTGTTGAAAG CGAAAGCGTGGGCGCTAGGGGTAGGGTGTTGAAAGCGAAAGCGTGAGCGC TAGGGGTAGGGTGTTGAAAATGAAAGCGTGAGCGCTAGGGGTAGGGTGTT GAAAGCGAAAGCGTGTGCTCGGTGGTGAGTGTGGGCACCTTGCCGCCGCG AAAGACCGAGCGAGGAGGAGCCTGGTGGTGGTGCAAAGCCGTTGTGGAAC GAGAAATCACCCGGGTTTTGCTTCGCATGTGGATGAGATATGTGGTAGAA GCCAACACAGCAGCAGTAGTACATACCTCCTCGGTCTTTTGTTGCACAAG CATGTTAGAGTTTGGAGCTAATAGTTTTTTTGTTAGAGTTTGGAGCTAAT AGTCTTTTGCTTGTGTGGGTGGATCTCATCGGTTTTTCAAACTGCTGCAC AAGCAAGGCTAACACGCATGCTACCTGCAAATTGAATGTGTTTCCTCATC ATGACCCTCACCAGGTTTTTGCTGGCCCAGACCGTGTCCCTGGTGGAGGC GGTTCGAATAACAGCGTCCGGATTCTCGGAGACGGATGGTTCTCCTGATA GAGGTGAGTGACACACACACACAACCGTAGGAGGGGGTCCAACCCCCCCC TCCTGTGTGATCCCAGGTGGGTCGTCTAGCTAGTCGTAGTGGAGGATGGG GGCCAGTGGGGCAGGCGACAGAAACACTAATAGGAGAAGAAAAAAAGAAA AAACACACACACACACACACAGAGGAGAGAGAGAGAGAGAGGGAGGGAGG GAGAGAGAGAGAGCGACGGTCGGTCGATTTCACACAACTAAAGAATGATA CAACGCAGCACGGAAATTTTGTTTGGAACTTGGCGGAACTTAGCCCGTGA CCACGCGAATCGACCGCATCGTGTGCCTGAGTCGAGAAATCTGATTATTT TTTTATCGTAAGTGACGCGAAGTGCCCCTTTCGAACCCCGCGTTTGACGC CCTTGAGTCTTGACGAATTTGAGTCGAGAAATCTTTTATTTTTTTATTGT AAGTGACGCGAACTGCCCCTTTCGAACCCCGCGTTTGACGCCCTTGAATC TTCACGAATTTGAACCGACGTTTTGCTCGTGCGCGCCCTTGCCCCATCGG CCGAGAAAAATCATGCTTCGTATCATGGCGTTTGAATGTTTTGATTGAAG AGCATCGCTTGTTTGTGCCGGTGCCTCCACCTGCGTGCGTGCCGTGAGGT TGATCGATAATAAGTTTTTAAAGTTTTTTTTTGGGGGGCGTTTACAAGGA GTAACCTTTTTTGTTCCTGTAAATCGTTGAACACCGACCTGGCGCACGCA GGGGAAACATCCATTCCCGGCCGCTGGGCCTCCCGAAACGCCTCGGCGCT GGTGGCGTCCTTGTGCCTGTGGCCGTGCTTAGTGCTGGCGGTGGTGCTGC TGGGGACCCACACCTGGATGGCCACGTCGAGCCTGACGAGCTACGAGTGC CTCAAGGGGGGTGGGCGCGGCTCGGACTCATTGAGCTATCTGGAGGTAAT TTAAATTTATACAATTTTAAATTTAGGAGCACGCGCGCTCGTTCGTCGTC TGCTTCGGAGGTTGTGGCTGTTTTGTGCTCCGCTTCGAAAGGTTGTGGCT GTTTTTTTGCTTCGAAGGTTTAGGCGCTGCTGTCTCCGCTGTTTTTGCGT TTTGAAGATCAAGCCG
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig9362:487..3802+

>mRNA_S-firma_M_contig9362.20331.1 ID=mRNA_S-firma_M_contig9362.20331.1|Name=mRNA_S-firma_M_contig9362.20331.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1608bp|location=Sequence derived from alignment at S-firma_M_contig9362:487..3802+ (Sphaerotrichia firma Sfir_13m male)
ATGATACAGATGATACAGGGATCTAACCCTGGGTACCTGAGCACCGACAG
GAATATGGGGGGCTTTGGCGACCTCGCCGAAGGAGAAGACGCCGAGCTTC
TGGTGCCGGAAGCAGGGATCTAACCCTGGGTACCTGAGCACCGACAGGAA
TATGGGGGGCTTTGGCGACCTCGCCGAAGGAGAAGACGCCGAGCTTCTGG
TGCCGGAAGCAGTAGCAGTGACTGGGACAGAATCACAGCGCCGTCACAGA
GCGGATGCAGAAGACCCCGGCGCCGCGAGACAGCAGCTCTTGGGGGGCAC
GGCGGCGGCGTCGAGCAGCGACCGGTACCCTGCTCCAACGGAAGAGACAA
GGAGGACGGAAAGGCCAAAGGGCGGCGGGGTCGGTGGTAGCATCAACAGC
AGTGGCAGCGTTGACAGCAGTGACCGCTGCGTCAGCGGCGGCGGCGGCGG
ACTGCCTCGGAGGGGCGACTTCGTCCGGTGCGCTCGCTGCGACGGCCTGC
AGTAGCAGTGACTGGGACAGAATCACAGCGCCGTCACAGAGCGGATGCAG
AAGACCCCGGCGCCGCGAGACAGCAGCTCTTGGGGGGCACGGCGGCGGCG
TCGAGCAGCGACCGGTACCCTGCTCCAACGGAAGAGACAAGGAGGACGGA
AAGGCCAAAGGGCGGCGGGGTCGGTGGTAGCATCAACAGCAGTGGCAGCG
TTGACAGCAGTGACCGCTGCGTCAGCGGCGGCGGCGGCGGACTGCCTCGG
AGGGGCGACTTCGTCCGGTGCGCTCGCTGCGACGGCCTGCAGGTCCCGCT
GCGGTCGCACCACTGCCGGCAGTGCGGGCGGTGCGTGGCGACGTTCGACC
ACCACTGCAAGATGATCGGGACCTGCATCGGCGAAAGAAACCACTGCCGG
TTCTGGTGGTCCCGCTGCGGTCGCACCACTGCCGGCAGTGCGGGCGGTGC
GTGGCGACGTTCGACCACCACTGCAAGATGATCGGGACCTGCATCGGCGA
AAGAAACCACTGCCGGTTCTGGTGGTTTTTGCTGGCCCAGACCGTGTCCC
TGGTGGAGGCGGTTCGAATAACAGCGTCCGGATTCTCGGAGACGGATGGT
TCTCCTGATAGAGGTTTTTGCTGGCCCAGACCGTGTCCCTGGTGGAGGCG
GTTCGAATAACAGCGTCCGGATTCTCGGAGACGGATGGTTCTCCTGATAG
AGGGGAAACATCCATTCCCGGCCGCTGGGCCTCCCGAAACGCCTCGGCGC
TGGTGGCGTCCTTGTGCCTGTGGCCGTGCTTAGTGCTGGCGGTGGTGCTG
CTGGGGACCCACACCTGGATGGCCACGTCGAGCCTGACGAGCTACGAGTG
CCTCAAGGGGGGTGGGCGCGGCTCGGACTCATTGAGCTATCTGGAGGTAA
TTTAAGGGAAACATCCATTCCCGGCCGCTGGGCCTCCCGAAACGCCTCGG
CGCTGGTGGCGTCCTTGTGCCTGTGGCCGTGCTTAGTGCTGGCGGTGGTG
CTGCTGGGGACCCACACCTGGATGGCCACGTCGAGCCTGACGAGCTACGA
GTGCCTCAAGGGGGGTGGGCGCGGCTCGGACTCATTGAGCTATCTGGAGG
TAATTTAA
back to top