mRNA_S-firma_M_contig936.20329.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig936.20329.1
Unique NamemRNA_S-firma_M_contig936.20329.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig936.20329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig936contigS-firma_M_contig936:12702..13430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size729
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig936.20329.1prot_S-firma_M_contig936.20329.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig936 12995..13426 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828766.1532876-UTR-S-firma_M_contig936:12701..129941622828766.1532876-UTR-S-firma_M_contig936:12701..12994Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig936 12702..12994 +
1697105149.5896244-UTR-S-firma_M_contig936:12701..129941697105149.5896244-UTR-S-firma_M_contig936:12701..12994Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig936 12702..12994 +
1622828766.180764-UTR-S-firma_M_contig936:13426..134301622828766.180764-UTR-S-firma_M_contig936:13426..13430Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig936 13427..13430 +
1697105149.611228-UTR-S-firma_M_contig936:13426..134301697105149.611228-UTR-S-firma_M_contig936:13426..13430Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig936 13427..13430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828766.1683397-CDS-S-firma_M_contig936:12994..134261622828766.1683397-CDS-S-firma_M_contig936:12994..13426Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig936 12995..13426 +
1697105149.6009214-CDS-S-firma_M_contig936:12994..134261697105149.6009214-CDS-S-firma_M_contig936:12994..13426Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig936 12995..13426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig936.20329.1

>prot_S-firma_M_contig936.20329.1 ID=prot_S-firma_M_contig936.20329.1|Name=mRNA_S-firma_M_contig936.20329.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=144bp
MLCTAHLDTHAGEKVVPEKRRKQSRRKTSKNLRGGINNKFTCTCARDMAN
RTTFRRVLFPTNKTSKFQPRPTQALPSKRFHPTSGGLHFVIASGGNLNTR
NTRSSVLLGSPPSRPFTSRTAPLTTLMGHEEKRCLLVPLPLAA*
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mRNA from alignment at S-firma_M_contig936:12702..13430+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig936.20329.1 ID=mRNA_S-firma_M_contig936.20329.1|Name=mRNA_S-firma_M_contig936.20329.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=729bp|location=Sequence derived from alignment at S-firma_M_contig936:12702..13430+ (Sphaerotrichia firma Sfir_13m male)
GTTCCTAAACTTGGTTTCTGAAGTTGTAAACTACAGCCTTCTCCCGACGC
TCAACATTTGAGTTTCATACCCTCTTTTGCCGCTCTTCCTTCCTTGAAAG
AACACCGAAACCAAATCCCGAAAGCGATTCACGCTTTGAACAACCCCCTG
CCGTACCCAACGACATTTGGGCGGGGAACCACCAGGGAACATACATACAT
ACAACAACACCGCGGTGGCTACAAAGAACGGGACGACGCCCCGACCACGG
ACGTACAGCAACAGGAACCCAGCACGACTGCCCAAGAAAAAGTATGTTAT
GTACAGCACACCTTGATACACATGCCGGTGAAAAAGTAGTACCTGAAAAA
CGTCGGAAACAATCACGAAGAAAAACATCCAAGAACCTGCGGGGGGGGAT
AAACAACAAATTTACATGTACATGCGCTCGGGATATGGCCAACCGAACAA
CCTTCCGCCGTGTTCTGTTCCCCACCAACAAAACTTCAAAATTCCAACCG
CGACCGACCCAAGCCTTACCGTCGAAGCGCTTCCATCCCACCAGTGGGGG
TTTACACTTCGTTATCGCCAGCGGGGGAAACCTTAACACACGAAACACGC
GGTCAAGCGTTCTGCTGGGCTCCCCCCCCTCCCGACCCTTCACTTCACGC
ACGGCACCCCTAACAACCCTCATGGGCCATGAAGAAAAACGCTGCCTGCT
TGTCCCGCTGCCGCTGGCCGCGTAGAGAC
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Coding sequence (CDS) from alignment at S-firma_M_contig936:12702..13430+

>mRNA_S-firma_M_contig936.20329.1 ID=mRNA_S-firma_M_contig936.20329.1|Name=mRNA_S-firma_M_contig936.20329.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=864bp|location=Sequence derived from alignment at S-firma_M_contig936:12702..13430+ (Sphaerotrichia firma Sfir_13m male)
ATGTTATGTACAGCACACCTTGATACACATGCCGGTGAAAAAGTAGTACC
TGAAAAACGTCGGAAACAATCACGAAGAAAAACATCCAAGAACCTGCGGG
GGGGGATAAACAACAAATTTACATGTACATGCGCTCGGGATATGGCCAAC
CGAACAACCTTCCGCCGTGTTCTGTTCCCCACCAACAAAACTTCAAAATT
CCAACCGCGACCGACCCAAGCCTTACCGTCGAAGCGCTTCCATCCCACCA
GTGGGGGTTTACACTTCGTTATCGCCAGCGGGGGAAACCTTAACACACGA
AACACGCGGTCAAGCGTTCTGCTGGGCTCCCCCCCCTCCCGACCCTTCAC
TTCACGCACGGCACCCCTAACAACCCTCATGGGCCATGAAGAAAAACGCT
GCCTGCTTGTCCCGCTGCCGCTGGCCGCGTAGATGTTATGTACAGCACAC
CTTGATACACATGCCGGTGAAAAAGTAGTACCTGAAAAACGTCGGAAACA
ATCACGAAGAAAAACATCCAAGAACCTGCGGGGGGGGATAAACAACAAAT
TTACATGTACATGCGCTCGGGATATGGCCAACCGAACAACCTTCCGCCGT
GTTCTGTTCCCCACCAACAAAACTTCAAAATTCCAACCGCGACCGACCCA
AGCCTTACCGTCGAAGCGCTTCCATCCCACCAGTGGGGGTTTACACTTCG
TTATCGCCAGCGGGGGAAACCTTAACACACGAAACACGCGGTCAAGCGTT
CTGCTGGGCTCCCCCCCCTCCCGACCCTTCACTTCACGCACGGCACCCCT
AACAACCCTCATGGGCCATGAAGAAAAACGCTGCCTGCTTGTCCCGCTGC
CGCTGGCCGCGTAG
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