mRNA_S-firma_M_contig934.20309.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig934.20309.1
Unique NamemRNA_S-firma_M_contig934.20309.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig934.20309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig934contigS-firma_M_contig934:25931..26287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828764.1206264-CDS-S-firma_M_contig934:25930..262721622828764.1206264-CDS-S-firma_M_contig934:25930..26272Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig934 25931..26272 +
1697105148.3579938-CDS-S-firma_M_contig934:25930..262721697105148.3579938-CDS-S-firma_M_contig934:25930..26272Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig934 25931..26272 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828764.1363761-UTR-S-firma_M_contig934:26272..262871622828764.1363761-UTR-S-firma_M_contig934:26272..26287Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig934 26273..26287 +
1697105148.3657544-UTR-S-firma_M_contig934:26272..262871697105148.3657544-UTR-S-firma_M_contig934:26272..26287Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig934 26273..26287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig934.20309.1prot_S-firma_M_contig934.20309.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig934 25931..26272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig934.20309.1

>prot_S-firma_M_contig934.20309.1 ID=prot_S-firma_M_contig934.20309.1|Name=mRNA_S-firma_M_contig934.20309.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=114bp
RRTRSEVWGRARGEEQLAAGAGRLYSKVKKEKQETERLLVVVFLVNRVLL
GAVMEGCRLPLPSVHFSDTKSKSKVVVWLMRFVVLGGGRWCFEGSMYVCL
FGCGCWRTAYAGN*
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mRNA from alignment at S-firma_M_contig934:25931..26287+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig934.20309.1 ID=mRNA_S-firma_M_contig934.20309.1|Name=mRNA_S-firma_M_contig934.20309.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=357bp|location=Sequence derived from alignment at S-firma_M_contig934:25931..26287+ (Sphaerotrichia firma Sfir_13m male)
CGGAGGACGCGATCCGAGGTATGGGGCCGAGCGAGAGGGGAAGAACAACT
GGCAGCAGGGGCTGGACGACTTTACTCGAAGGTGAAAAAAGAGAAACAGG
AAACGGAGCGTTTATTGGTTGTTGTTTTTTTAGTCAACCGCGTTTTGCTT
GGTGCGGTGATGGAGGGATGCCGTCTGCCTCTGCCGTCTGTCCACTTTTC
TGACACGAAATCGAAGAGTAAGGTGGTTGTTTGGCTCATGCGGTTTGTCG
TTCTTGGTGGTGGACGGTGGTGCTTCGAAGGTAGTATGTATGTATGTTTG
TTTGGCTGCGGATGTTGGAGGACTGCCTACGCGGGAAATTAAATTTAATA
CTAAAAC
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Coding sequence (CDS) from alignment at S-firma_M_contig934:25931..26287+

>mRNA_S-firma_M_contig934.20309.1 ID=mRNA_S-firma_M_contig934.20309.1|Name=mRNA_S-firma_M_contig934.20309.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=684bp|location=Sequence derived from alignment at S-firma_M_contig934:25931..26287+ (Sphaerotrichia firma Sfir_13m male)
CGGAGGACGCGATCCGAGGTATGGGGCCGAGCGAGAGGGGAAGAACAACT
GGCAGCAGGGGCTGGACGACTTTACTCGAAGGTGAAAAAAGAGAAACAGG
AAACGGAGCGTTTATTGGTTGTTGTTTTTTTAGTCAACCGCGTTTTGCTT
GGTGCGGTGATGGAGGGATGCCGTCTGCCTCTGCCGTCTGTCCACTTTTC
TGACACGAAATCGAAGAGTAAGGTGGTTGTTTGGCTCATGCGGTTTGTCG
TTCTTGGTGGTGGACGGTGGTGCTTCGAAGGTAGTATGTATGTATGTTTG
TTTGGCTGCGGATGTTGGAGGACTGCCTACGCGGGAAATTAACGGAGGAC
GCGATCCGAGGTATGGGGCCGAGCGAGAGGGGAAGAACAACTGGCAGCAG
GGGCTGGACGACTTTACTCGAAGGTGAAAAAAGAGAAACAGGAAACGGAG
CGTTTATTGGTTGTTGTTTTTTTAGTCAACCGCGTTTTGCTTGGTGCGGT
GATGGAGGGATGCCGTCTGCCTCTGCCGTCTGTCCACTTTTCTGACACGA
AATCGAAGAGTAAGGTGGTTGTTTGGCTCATGCGGTTTGTCGTTCTTGGT
GGTGGACGGTGGTGCTTCGAAGGTAGTATGTATGTATGTTTGTTTGGCTG
CGGATGTTGGAGGACTGCCTACGCGGGAAATTAA
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