mRNA_S-firma_M_contig934.20303.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig934.20303.1
Unique NamemRNA_S-firma_M_contig934.20303.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig934.20303.1 vs. uniprot
Match: A0A6H5JM54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM54_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.180e-62
Identity = 104/129 (80.62%), Postives = 118/129 (91.47%), Query Frame = 1 
Query:  130 MTWAGLSVTLWAVVGGVFVLFLLVIDRWIHCTRNATRFCRCKKPPPDPLEGLPEQPDVENDVGFHREHDRDFERNWHVVALQRDETQERADEIIRLREEAVRRRELEAAAKEKIKIVRGVATVRGIQTE 516
            M++AGLSVTLWAVVGGVF+L LL +DRWIHCTRN   +C CKKPPPDPL+G+PEQPDVEN  G+HREHDRDFERNWH+VALQRDETQE A+EI+RLR EA RRRELEAA++EK+KIVRGVATVRGIQTE
Sbjct:    1 MSYAGLSVTLWAVVGGVFILLLLAMDRWIHCTRNWADWCSCKKPPPDPLDGVPEQPDVENQEGYHREHDRDFERNWHLVALQRDETQEEAEEILRLRAEAARRRELEAASREKVKIVRGVATVRGIQTE 129
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BLAST of mRNA_S-firma_M_contig934.20303.1 vs. uniprot
Match: D7FWH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWH8_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.350e-35
Identity = 70/83 (84.34%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:  268 DPLEGLPEQPDVENDVGFHREHDRDFERNWHVVALQRDETQERADEIIRLREEAVRRRELEAAAKEKIKIVRGVATVRGIQTE 516
            DPL+G+PEQPDVEN  G+HREHDRDFERNWHVVALQRDETQE A+EI+RLR EA RRRELEAA++EK+KIVRGVATVRGIQTE
Sbjct:   22 DPLDGVPEQPDVENQEGYHREHDRDFERNWHVVALQRDETQEEAEEILRLRAEAARRRELEAASREKVKIVRGVATVRGIQTE 104
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig934.20303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JM54_9PHAE1.180e-6280.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWH8_ECTSI1.350e-3584.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig934contigS-firma_M_contig934:4700..10357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_006570.1
Exons4
Model size2279
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig934.20303.1prot_S-firma_M_contig934.20303.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig934 6460..10228 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828764.3423297-UTR-S-firma_M_contig934:4699..64591622828764.3423297-UTR-S-firma_M_contig934:4699..6459Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig934 4700..6459 -
1697105148.470471-UTR-S-firma_M_contig934:4699..64591697105148.470471-UTR-S-firma_M_contig934:4699..6459Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig934 4700..6459 -
1622828764.4100084-UTR-S-firma_M_contig934:10228..103571622828764.4100084-UTR-S-firma_M_contig934:10228..10357Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig934 10229..10357 -
1697105148.5341558-UTR-S-firma_M_contig934:10228..103571697105148.5341558-UTR-S-firma_M_contig934:10228..10357Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig934 10229..10357 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828764.3552983-CDS-S-firma_M_contig934:6459..65521622828764.3552983-CDS-S-firma_M_contig934:6459..6552Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig934 6460..6552 -
1697105148.481236-CDS-S-firma_M_contig934:6459..65521697105148.481236-CDS-S-firma_M_contig934:6459..6552Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig934 6460..6552 -
1622828764.3694308-CDS-S-firma_M_contig934:7659..78301622828764.3694308-CDS-S-firma_M_contig934:7659..7830Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig934 7660..7830 -
1697105148.4892783-CDS-S-firma_M_contig934:7659..78301697105148.4892783-CDS-S-firma_M_contig934:7659..7830Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig934 7660..7830 -
1622828764.3839176-CDS-S-firma_M_contig934:9743..98201622828764.3839176-CDS-S-firma_M_contig934:9743..9820Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig934 9744..9820 -
1697105148.4990394-CDS-S-firma_M_contig934:9743..98201697105148.4990394-CDS-S-firma_M_contig934:9743..9820Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig934 9744..9820 -
1622828764.3968496-CDS-S-firma_M_contig934:10179..102281622828764.3968496-CDS-S-firma_M_contig934:10179..10228Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig934 10180..10228 -
1697105148.5169532-CDS-S-firma_M_contig934:10179..102281697105148.5169532-CDS-S-firma_M_contig934:10179..10228Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig934 10180..10228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig934.20303.1

>prot_S-firma_M_contig934.20303.1 ID=prot_S-firma_M_contig934.20303.1|Name=mRNA_S-firma_M_contig934.20303.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=130bp
MTWAGLSVTLWAVVGGVFVLFLLVIDRWIHCTRNATRFCRCKKPPPDPLE
GLPEQPDVENDVGFHREHDRDFERNWHVVALQRDETQERADEIIRLREEA
VRRRELEAAAKEKIKIVRGVATVRGIQTE*
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mRNA from alignment at S-firma_M_contig934:4700..10357-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig934.20303.1 ID=mRNA_S-firma_M_contig934.20303.1|Name=mRNA_S-firma_M_contig934.20303.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=5658bp|location=Sequence derived from alignment at S-firma_M_contig934:4700..10357- (Sphaerotrichia firma Sfir_13m male)
TTCATGGCCAGAGAGCCCCTTCCATCCCGCCGCCGGTCGTTGTCACATTC
CGAGTTCTGTTAGACTGCTACAAGCATCACAGAACACGCAGCCCTCTCCG
TCGTGCGGACAGCGGTGGAGAGCTAGGCCATGACTTGGGCAGGGTTGTCA
GTCACCCTTTGGGCGGTTGTTGGCGGAGGTGAGTTTGTGCTATCCCCTCC
GTGCTGTTGGTGAGGGAGAGAGCGAGCACCAAAAAAGTTCTCCTTTGCCT
TTTCACAGCGTAGTACATTTTGTCCCCGGCCGCGAAACGTTGCTCATTTT
TTCTCCCCACAAAGACGGTGTGCTCTCGCGATAGGCCTATGATGTCTCCT
CTGCCATCGTTGTATGACCACTACCACGAACGACTGCTGTGTTGGGCGAA
ATGGCGGTGCTTGTTGTGCAGCGTGTGTGTCGCTGTTGCTAGTGTGCTCT
AAAGTTGTCTTCATCTGTCTCTTCTTGCCCCTGCTGTTCTCTCCCGCCTC
TTGCTGGGACACGCTCGTGCGCTTTTGGTTTGTCCAGTGTTCGTTTTATT
TTTGTTAGTGATCGACCGGTGGATACACTGCACGAGGAACGCAACACGCT
TCTGCCGGTGTAAGGTGAGGACCTAGTTATGAGTAGCGGGTGTTGTTACT
GAAACACCTTTGAAAACTGCAATCCCTCTTGTTTGCATACTGCATACCCT
GACCGTCTCCTCGTCGTTGAAGGTACCTGTGCTGAGTGCAGTGAGAATCA
ACCAGGTCTCTGCTTCATCTCCACCGCATCTCCACCGCCTTGCCAGAAAG
CATTGTTGTGTCGTAATAAACATTCTAGCACCATGCATCCAGCAGCAGCT
TTCGATGCAGGACTTAGGCCCTGTCTCGTTTGGCAGAGTATATTATCCCG
CGTTGGCCCGTGGACTTCCCAGACAACAAGAAACGAACAACGCTATTGTA
GAATGTCTCGCCAGGATGGCTGCGGGCGCCAGAACCCATTCCGTTACAAG
TAATTGTCTTGAGGTGTCGGAGCGCGTGGCGCATACCGTCTGCATGTAGA
ACTCTCGTGTGCGTCGCTTGGACGATTTCATCGTTGTGGACATGCGGACA
TGCGGCCCCGACACCGGCGAGACACACAACCACACAGCCTATCCCACAAG
ATAAAAGATAGAACGACCCGGGTACACAAACAGCGAAGAGATCATGAAAA
TCCAACTGATGTATGAGTCGCTTTCGGCAAAGCGGAGACACAGGGGGGGC
GCGTGCGGTGCTTTGGGTTTCTCACGCGGAGGGCGGTAAGGACGGGAATC
GACTGCTGCCCTGCACGTACATATATGTATAGCGTGCCCAGCGAAAGCGC
GCCGCCACCACCCTGAAACATGGCGTTCGTTCTATCATACATAGTTTTTT
GTGATGAAGGCGGGGTCCGCACATGTGCGGTGTTAAGCGTAGTGAACGGA
GGTCGTGTTTGTTTTCTACTGGTTTGCCTCCACGCTGTTGCGTTATGGGT
AGATATTGTGCGGATGGTGTGCCGTCTGCTTTGTCTTCTTCCCCACCCCG
GGGCTGTTGTCAACAATCTGTTGATACAACAAGAAAAGACAGACGGTATG
ATTCTCCGCATTAATTTTGCCGCCCGTTTTCTCGGGGGGTTGTTTCGTGT
GTTCTGTCTTCAAAGCCGGGATAGACACAGAAATCATCGGGTGTTCTGAC
TTACGTTAACGACAAAGGACATCCGGGCGTGCACGGAAACAATCAATCCC
CACAGACGGCATACGGTACCGGTGGTTCGAACGGACCCATGGAACTCGTT
GCCCTCTCCCCTCCTCTCTCTGGTCAACGTCGTCGGAGCAGAACGTTTCC
CTCGAGGATAAGGAGAGCCAGACCAGCGGTCGATCGTCCCCCGAGAAGTA
CAGCAGTAGACAACATGAACAACATGTAGTGAAACTTCAACTCTGACTGT
AGACTACCTGTTGGCAGGGTCGGGCTTGTTTCTTGAAATATTTTTTCTTG
TGCTTGAGGAGACAGGCGGGAGGGGAGAGCCGATCCTGCGTGGCAAGCCA
ATAGACACCACCCGTTTGCACATGTGCTTTTTGCCGGCGTGCTCGGGTGG
CGACGCGAGCGGGTGGTAATCGCGTATTTTTGCCAGCCACCAGCAAGCAC
TTCCGAGAGGCATGGCAAAAAAAAAAGAGCGAACGATGTTGGAATGATGA
ATTATGCACGCTTGTTGACGGATTCCAGCCCGCTGCAGGCACCATGATCC
ACGAATCTTTGGTACCGCCCTCGAAGCCTCCCCGCAAAGCTGTCTGGCTG
GTCGGCTCGGCTGGGGGCGTTGACGGCGGGGATCATTGTGTCTACACCGT
TTGCGCTTTGCTTTCTCCTGAAATGTATGTACTACTCCGTATCTTACGAC
GACTTAACCCTTTTCTCCTCGTCCTGCAACGTCCTGCTGTCGTTTGGTCT
GCTGGGGTGTGTATTTTGTATACGTAGTCTAATTGCACCAACACGCGCGT
GTTGTTCACGTTTTTGATCGTGCTCAGAAACCACCACCAGATCCATTGGA
GGGGCTGCCGGAGCAGCCGGACGTGGAGAATGACGTGGGCTTTCACAGGG
AGCACGACCGCGACTTCGAACGGAATTGGCACGTGGTGGCCTTGCAACGA
GACGAGACGCAGGAGAGAGCTGACGAGATTATCCGGTTGCGCGAAGAGGT
CAGTGTCTTGTGTCTCGTGTCTTGTGTGTTTGCGGGGGGGGGCAGGAGGG
CGTGCGTGTGCCGATGTTGGACTGCTTGATGGTTTCAGCGTCGGAAGGTG
CTAGGCGTTGGACCAGTTGCAAAGGGAAAGGTGAAAGGTATGTACCCGTC
GGTTGATCATGTGCGCGTTTCATCTACAATACACGCCACTTCTTTGAGCA
ACTGATTGTGTCGTGAGCAGCCGGGGTATACTGGTAGATGTGGTCGTGTC
GATATCATATGACGATAACATGGATCATTTTTTGCGTACCGGTCTTGTGC
CACGTGCCGTGTGTCCAGATCACGTCATCACGGCACGCAGGACGTGTTAC
CATTTTTTTTTTCTCCACCGTGGTGTTGCTGTCGGAGATTGTGTCGAGTG
GTGCTGATGAGCGGACGTCCGACCTTGTGTCCGGCCGCTACAATAGAGTA
GTGTTGGTGCGGTGCATGTGACGCAACTCTGCGCGCACCACACCCAAGAG
ACGGCTCTTGCTGTGAGCCGATCGATGTGCATGTGGACGAATGGCTAGAA
AGTTTTGCGGTTTGCGGTTTGCGGTTTGCGAAAACCCAATGAAACACCTA
GAAACCTCCGGTTAGCACGACCGGCTAAAGCGCGACTGGCGACATGCCGT
CCGTCGCCGAATCAAGCAAGTTGGTGTCCACAGCCCTTAAGAGGGTATTC
CTTTCTTGAAACAGAGAGGTATAATTCCCCACCTAAACGCAGGCTTTCAC
AGCAAAAAAGCGTCGCCCCGGCTGTCTGATTGGGAACGGCAACGGTGGTC
GAAGGGTACAGTAGACTACAATTTGCGTCGCTGTACATCGTGATTCGGCA
ATGTGAAGACTTTGCGCTTTCGATTCCAAAGCCGCAGGTGCAATAATTCA
AGAATTGCTCGCGCGCTTTTCTAGAGTGCAGCATTCGTTTGTCCTCTCGA
GTCTGCCGTTGCTGATGCCGTCAGTCCCCGACTAATCCGCTGTGAGCTCT
GTTCCACTCTCCACATTCCAACCCACCCTCATGCCTGCCTTACCCCTCCG
AAAAAACGTCGGCTATGTTCCGGGATCCGTGCTCATTTTATTTTCCTCAT
TTTAGGCGGTACGGAGACGCGAGCTCGAGGCAGCAGCCAAAGAGAAGATC
AAGATAGTCCGAGGAGTGGCGACGGTCCGAGGGATACAGACGGAGTAGGC
GAAGATGGAGTAGCGTGCGCGCGTTACAGCAGTGGTTTTCTTACGAGATA
GAAGTAAAATCTAAGATCGTACGATACTTCTTTGTTTAGGGCGGTTCTGG
TGTTGTTGTGGAGGAGCGCCTCGAAAGCCATTCTTTCGGCCAACAATAAT
GACACGGAGTTCAGCAGCACAGCACAGAGTGGCATTTGAGCGTGACTCAT
GGTAGTCAACAGAAGCTGTTGGGGGGGCGCCTGTGTGTGTTACGTGCGGT
CTAAACGGCCGACTTCGGCCAATCGGTGTAGTTTTTGACCAGCGCCATTT
GCCAGGGCCTCTTATGCCGAACGCCACCGGTCTTTCCGACAGTCGGTATG
GATGATCGATATTTGAGACTTTGGTGTCGGGGGGAGATGTGATGTGGGTG
GGACGTACGTGTGGGACGTGTGGGGTATTTGTTTGTTCATGGCAGGCAAT
CCACCGAAACGACCAGCCGCAGCCGCGTGCACAGACGAGAGGCAGGGCTA
CCTTGAGATCTGGATTTGGGAAGGTTTGGGGGGAGGTTGCACGTGACGTG
TGTTGGCGTGAAAAAGTCGGATGCGGTCGAGGGCACGCCGTTGCCTCTTC
CACCTCAACGCAAGACAGCAGCACGCGCTGTCGATTTTTTTACTTGGGGG
GGTAAGCTGGGGGACAAGGTTGCCTCGTGTCGTCTCGCCGCCGTAGAATT
ATGTCTTGTTGAGTGGCACCACGTTGGTCTGGGTTGCCCCAAGGGCGCGC
GGCAGATGATGATTTCCCCCTCGCAGCAAGCGTTGTCGCACCACCGAGTT
CCGTGGCCGATGATTATATTGTAAATGAGGTTTTTTGGCTCCTCTGTCTT
GTCGATTCGTTTTTTTGCCGTTTACAGGCGTGTCGGGTGTCGACCATCGG
GCCCGCCTTTGCCGTAGAAGTATGACAACGTAGTTCCTCCCTACCCTCTC
GTGCAATTTTTTTACGTTTTTACCGACACGAAGGTCAGAGAAAGGCTATA
CGATTGACTTTCGGCCGTTGCTTGGCCTAGTTAAGTATTCCACACTGGCG
CGGTTAGGCTAATTTCGCGTTTCTTTTATTTTTGCCGGAGTCACCGTACA
GTTTTAGTTTTTTTACGATGGGGAACGGGGTATACACGACGGTGTCCCGA
GGTACGATATCTTCTATTGTACCTTGTTCCGTCTGCCTTCTACACCGCCT
GGGGTGGTTTCATTGGCGTAAGTTCGGAAAAATTAAGGCGTGGGGATGGG
TTCAGAGGAACCACACTTGTCGAGGGAGGCTACTGCCGAAAGGAGGCTGG
GCGATGACCGTACGCATAAATATCGCCGTTTTCCCGGAAATCGAGAAAAA
AAACGGCGTGGGCTACGCGTAAATGGACAGACGCACGCTCAAATACATCC
GCTGTAGAATCCCCATCCCTATCGGTATGGGAAATAGGACCTAGGAGACA
CACAGGGGACAGAAGCAAAGGTCACAGGCGTCCTCTCGGTTAGCCTAGAT
AAGGCTCGAAAAGGGCAATTCATAGAGACTTTAAACTTGCCTTCAGGGGG
GGGGGGGTTGTCGGTCGAAACGGTAGGTCGTTCTGCCGTTGAAAACGTTT
CCCAACCAGCCGGGTCATTGGTGTTATTTGTTGGGTGAGGGGTTGACGGG
GGCACGTGACTCAATGATCGTGCAAAGCACCTTAAGAGGGGCATTTCCGG
TGCCGGGAAGCTGGTTGGGGCCGCCGGCACCGGGGCGCAAAAATTCAGCC
AAAGCAGC
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Coding sequence (CDS) from alignment at S-firma_M_contig934:4700..10357-

>mRNA_S-firma_M_contig934.20303.1 ID=mRNA_S-firma_M_contig934.20303.1|Name=mRNA_S-firma_M_contig934.20303.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=780bp|location=Sequence derived from alignment at S-firma_M_contig934:4700..10357- (Sphaerotrichia firma Sfir_13m male)
ATGACTTGGGCAGGGTTGTCAGTCACCCTTTGGGCGGTTGTTGGCGGAGA
TGACTTGGGCAGGGTTGTCAGTCACCCTTTGGGCGGTTGTTGGCGGAGTG
TTCGTTTTATTTTTGTTAGTGATCGACCGGTGGATACACTGCACGAGGAA
CGCAACACGCTTCTGCCGGTGTAAGTGTTCGTTTTATTTTTGTTAGTGAT
CGACCGGTGGATACACTGCACGAGGAACGCAACACGCTTCTGCCGGTGTA
AGAAACCACCACCAGATCCATTGGAGGGGCTGCCGGAGCAGCCGGACGTG
GAGAATGACGTGGGCTTTCACAGGGAGCACGACCGCGACTTCGAACGGAA
TTGGCACGTGGTGGCCTTGCAACGAGACGAGACGCAGGAGAGAGCTGACG
AGATTATCCGGTTGCGCGAAGAGAAACCACCACCAGATCCATTGGAGGGG
CTGCCGGAGCAGCCGGACGTGGAGAATGACGTGGGCTTTCACAGGGAGCA
CGACCGCGACTTCGAACGGAATTGGCACGTGGTGGCCTTGCAACGAGACG
AGACGCAGGAGAGAGCTGACGAGATTATCCGGTTGCGCGAAGAGGCGGTA
CGGAGACGCGAGCTCGAGGCAGCAGCCAAAGAGAAGATCAAGATAGTCCG
AGGAGTGGCGACGGTCCGAGGGATACAGACGGAGTAGGCGGTACGGAGAC
GCGAGCTCGAGGCAGCAGCCAAAGAGAAGATCAAGATAGTCCGAGGAGTG
GCGACGGTCCGAGGGATACAGACGGAGTAG
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