mRNA_S-firma_M_contig9320.20281.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9320.20281.1
Unique NamemRNA_S-firma_M_contig9320.20281.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9320.20281.1 vs. uniprot
Match: A0A6H5LD75_9PHAE (GDP-mannose 4,6-dehydratase n=6 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5LD75_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 8.820e-116
Identity = 165/178 (92.70%), Postives = 173/178 (97.19%), Query Frame = 3 
Query:    3 AYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKCIYLGNLDAKRDWGHAKDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVQEAFAYVGTEITWVGEGVEEYGHVKGEPENVLVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEITFKELVKDMMQSDIANVDAGNDH 536
            AYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQK IYLGNLDAKRDWGHAKDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFV+E+F YVGTEITWVGEGVEEYGH KG+PENVLV+VDPRYFRPTEVELLLGDCTKAKKELGWVPEI+F ELVKDMM++DIA VDAGN+H
Sbjct:  184 AYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHAKDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGTEITWVGEGVEEYGHAKGDPENVLVKVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFTELVKDMMKADIAYVDAGNEH 361
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BLAST of mRNA_S-firma_M_contig9320.20281.1 vs. uniprot
Match: A0A8J2SRK3_9STRA (GDP-mannose 4,6-dehydratase n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRK3_9STRA)

HSP 1 Score: 268 bits (685), Expect = 1.250e-81
Identity = 124/174 (71.26%), Postives = 146/174 (83.91%), Query Frame = 3 
Query:    3 AYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKCIYLGNLDAKRDWGHAKDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVQEAFAYVGTEITWVGEG--VEEYGHVKGEPENVLVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEITFKELVKDMMQSDIANV 518
            AYGMHLTNGILFNHESPRRGPTFVTRKITRAVARI +GK K +YLGNLDAKRDWGHA+DY++GMWLMVQRDEP DYVLSTGECHSVKEF + AFA VG  + W G    V+E G    +P  VLV+VDP+YFRPTEV+LL+GDC+KAKK LGW P++TFK L ++M+ +D+A +
Sbjct:  231 AYGMHLTNGILFNHESPRRGPTFVTRKITRAVARISQGKMKTLYLGNLDAKRDWGHARDYVEGMWLMVQRDEPDDYVLSTGECHSVKEFCEVAFARVGITVQWKGAAGSVDEIGVDATDPSRVLVKVDPKYFRPTEVDLLVGDCSKAKKLLGWAPKVTFKALAEEMVDADLAEL 404
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BLAST of mRNA_S-firma_M_contig9320.20281.1 vs. uniprot
Match: A0A4D9D4U1_9STRA (GDP-mannose 4,6-dehydratase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4U1_9STRA)

HSP 1 Score: 261 bits (667), Expect = 2.790e-79
Identity = 119/178 (66.85%), Postives = 149/178 (83.71%), Query Frame = 3 
Query:    3 AYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKCIYLGNLDAKRDWGHAKDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVQEAFAYVGTEITWVGE--GVEEYGHVKGEPENVLVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEITFKELVKDMMQSDIANVDAGN 530
            AY M L NGILFNHESPRRGPTFVTRKITRAVARI +G QK +YLGNLDAKRDWGHA+DY++GMW+M+Q D P D+VL+TGE H V+EFV++AF +VG E+ W GE   V E G+ K +PE+VLV++DP+YFRPTEVELLLGD  KAKK +GW PE++F +LVK+M+++DIA V+ G+
Sbjct:  207 AYDMFLVNGILFNHESPRRGPTFVTRKITRAVARIQKGLQKTLYLGNLDAKRDWGHARDYVRGMWMMLQHDTPDDFVLATGETHPVREFVEKAFRHVGMEVEWKGEKGSVHEVGYNKADPEHVLVKIDPQYFRPTEVELLLGDPAKAKKHIGWEPEVSFDDLVKEMVEADIALVEKGD 384
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BLAST of mRNA_S-firma_M_contig9320.20281.1 vs. uniprot
Match: A0A835Z0Z6_9STRA (GDP-mannose 4,6-dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Z6_9STRA)

HSP 1 Score: 260 bits (664), Expect = 3.810e-79
Identity = 118/177 (66.67%), Postives = 148/177 (83.62%), Query Frame = 3 
Query:    3 AYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKCIYLGNLDAKRDWGHAKDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVQEAFAYVGTEITWVGE--GVEEYGHVKGEPENVLVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEITFKELVKDMMQSDIANVDAG 527
            AYGM L+NGILFNHESPRRGPTFVTRKITRAV RIHR +Q+C+YLGNL+++RDWGHA+DY++GMW+M+Q+D P D+VL+TGE HSVKEFV+ +FAYVGT + W GE   V+E+G    +   VLV+VDP YFRPTEV+LL+G   KAK+ LGW P+ITFK LV+DMM++D+A VD G
Sbjct:  181 AYGMFLSNGILFNHESPRRGPTFVTRKITRAVCRIHRQRQECLYLGNLESQRDWGHARDYVEGMWMMLQQDTPDDFVLATGEMHSVKEFVEASFAYVGTTVAWKGERGSVDEHGVDAADESRVLVKVDPSYFRPTEVDLLIGSPAKAKRVLGWSPKITFKALVEDMMKADLAEVDTG 357
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BLAST of mRNA_S-firma_M_contig9320.20281.1 vs. uniprot
Match: K0T9K6_THAOC (GDP-mannose 4,6-dehydratase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T9K6_THAOC)

HSP 1 Score: 250 bits (639), Expect = 5.340e-77
Identity = 120/174 (68.97%), Postives = 143/174 (82.18%), Query Frame = 3 
Query:    3 AYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKCIYLGNLDAKRDWGHAKDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVQEAFAYVGTEITWVGEG--VEEYGHVKGEPENVLVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEITFKELVKDMMQSDIANV 518
            AYGMHLTNGILFNHESPRRG TFVTRKIT AVARI +G +K +YLGN+DAKRDWGHA+DY+KGMW+M+Q D P DYVL+TGE H+V+EFV++AFA VGT I W GE   V+E G    +   VLV++DPRYFRPTEVELLLGD +KAKK LGW  E+ F+ LVKDMM++D+A V
Sbjct:   62 AYGMHLTNGILFNHESPRRGATFVTRKITIAVARISQGLEKTLYLGNIDAKRDWGHARDYVKGMWMMLQHDVPDDYVLATGETHTVREFVEKAFAEVGTTIKWKGETGTVDEIGVDADDESRVLVKIDPRYFRPTEVELLLGDPSKAKKTLGWEAELGFEGLVKDMMKADLAMV 235
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BLAST of mRNA_S-firma_M_contig9320.20281.1 vs. uniprot
Match: A0A482T0S9_9ARCH (GDP-mannose 4,6-dehydratase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T0S9_9ARCH)

HSP 1 Score: 249 bits (637), Expect = 1.520e-76
Identity = 116/180 (64.44%), Postives = 143/180 (79.44%), Query Frame = 3 
Query:    3 AYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKCIYLGNLDAKRDWGHAKDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVQEAFAYVGTEITWVGEG--VEEYGHVKGEPENVLVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEITFKELVKDMMQSDIANVDAGNDH 536
            AYGMH TNGILFNHESPRRGPTFVTRKITRAVA+IHRG QK +YLGNLDAKRDWGHAKDY++GMW M+Q ++  DYVL+T E HSV+EF+++AF ++GTEI W+GE   V+E G    +   VLV+VDPRYFRPTEV++L+G+  KA K LGW P   F +LVK+M+ +DIA +D    H
Sbjct:   77 AYGMHATNGILFNHESPRRGPTFVTRKITRAVAKIHRGLQKTLYLGNLDAKRDWGHAKDYVEGMWRMLQTEQGDDYVLATNETHSVREFIEKAFGHIGTEIKWIGERGTVDETGVDAKDESRVLVKVDPRYFRPTEVDILIGNPAKATKALGWKPTTLFGDLVKEMVDADIAALDNPGSH 256
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BLAST of mRNA_S-firma_M_contig9320.20281.1 vs. uniprot
Match: A0A7S2VZB8_9STRA (GDP-mannose 4,6-dehydratase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZB8_9STRA)

HSP 1 Score: 252 bits (644), Expect = 2.950e-76
Identity = 117/180 (65.00%), Postives = 145/180 (80.56%), Query Frame = 3 
Query:    3 AYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKCIYLGNLDAKRDWGHAKDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVQEAFAYVGTEITWVGE--GVEEYGHVKGEPENVLVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEITFKELVKDMMQSDIANVDAGNDH 536
            AYGM+ TNGILFNHESPRRG TFVTRK+TR VA IH  K+KC++LGN+DAKRDWGHA+DY++GMWLM+Q+++P DYVL+TGE H+V+EFV++AFA VG  I W G    V+E G  K +   VLV++DPRYFRPTEVELLLGD TKAKKELGW    TF ELVK+M+Q D+    +GN++
Sbjct:  177 AYGMYCTNGILFNHESPRRGNTFVTRKVTRCVANIHLKKEKCLFLGNIDAKRDWGHARDYVEGMWLMLQQEKPDDYVLATGETHTVREFVEKAFAVVGISIVWKGAFGTVDETGVDKDDESRVLVKIDPRYFRPTEVELLLGDPTKAKKELGWTATTTFDELVKEMVQEDLKLFKSGNEN 356
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BLAST of mRNA_S-firma_M_contig9320.20281.1 vs. uniprot
Match: A0A7S2XZ47_9STRA (GDP-mannose 4,6-dehydratase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ47_9STRA)

HSP 1 Score: 252 bits (644), Expect = 4.900e-76
Identity = 113/177 (63.84%), Postives = 146/177 (82.49%), Query Frame = 3 
Query:    3 AYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKCIYLGNLDAKRDWGHAKDYIKGMWLMVQRD-EPSDYVLSTGECHSVKEFVQEAFAYVGTEITWVGEGVEEYGHVKGEPENVLVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEITFKELVKDMMQSDIANVDAGN 530
            AY MH  NGILFNHESPRRGPTFVTRK+TRAVARIH+G Q+ + LGNLD++RDWGHA+DY++GMW+M+QRD E  DYVL+TGECHSV+EFV++AF Y+G  + W G GV+E G      + VLV+++PRYFRPTEV+LL+GD +KAK  LGW P++TF+ LV++MMQ+DI  V+ G+
Sbjct:  194 AYNMHCINGILFNHESPRRGPTFVTRKVTRAVARIHKGLQQDLQLGNLDSQRDWGHARDYVEGMWMMMQRDGEAEDYVLATGECHSVREFVEKAFHYIGITLGWRGSGVDEVGFDSANEDRVLVKINPRYFRPTEVDLLVGDASKAKNLLGWSPKVTFQALVEEMMQADIDKVEKGD 370
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BLAST of mRNA_S-firma_M_contig9320.20281.1 vs. uniprot
Match: F0YLN7_AURAN (GDP-mannose 4,6-dehydratase n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLN7_AURAN)

HSP 1 Score: 252 bits (643), Expect = 6.130e-76
Identity = 115/176 (65.34%), Postives = 144/176 (81.82%), Query Frame = 3 
Query:    3 AYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKCIYLGNLDAKRDWGHAKDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVQEAFAYVGTEITWVGEG--VEEYGHVKGEPENVLVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEITFKELVKDMMQSDIANVDA 524
            AYGMHLTNGILFNHESPRRGPTFVTRKITRAV RI   +QK +YLGNLDAKRDWGHA+DY++GMWLMVQRD P DYVL+TGECHSV+EFV+ +F +VG ++ W GE    EE G    +  + LV+VDP+Y+RPTEV+LL+GD  KA+++LGW P+ITFK+L  +M+ +D+A + A
Sbjct:  187 AYGMHLTNGILFNHESPRRGPTFVTRKITRAVVRIKAQQQKTLYLGNLDAKRDWGHARDYVEGMWLMVQRDVPDDYVLATGECHSVREFVEVSFEHVGIKVKWTGEPGTAEEVGVDAADESHELVKVDPKYYRPTEVDLLVGDAAKARRDLGWKPKITFKKLATEMVDADMAELKA 362
[Close]
BLAST of mRNA_S-firma_M_contig9320.20281.1 vs. uniprot
Match: B8C1P6_THAPS (GDP-mannose 4,6-dehydratase n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8C1P6_THAPS)

HSP 1 Score: 250 bits (638), Expect = 2.680e-75
Identity = 119/174 (68.39%), Postives = 139/174 (79.89%), Query Frame = 3 
Query:    3 AYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKCIYLGNLDAKRDWGHAKDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVQEAFAYVGTEITWVGEG--VEEYGHVKGEPENVLVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEITFKELVKDMMQSDIANV 518
            AYGMHLTNGILFNHESPRRG TFVTRKIT AVARI  G  KC+YLGN+DAKRDWGHA+DY++GMW M+Q D P DYVL+TGE H+V+EFV++AFA+ GT I W GE   V EYG    +   VLVR+DPRYFRPTEV+LLLGD +KAKK LGW   + F+ LVKDMM +D+A V
Sbjct:  176 AYGMHLTNGILFNHESPRRGATFVTRKITIAVARITEGLDKCLYLGNIDAKRDWGHARDYVEGMWRMLQHDTPDDYVLATGETHTVREFVEKAFAHAGTTIAWKGETGTVNEYGVDAADESRVLVRIDPRYFRPTEVDLLLGDPSKAKKTLGWEATLGFEGLVKDMMTADLAMV 349
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9320.20281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LD75_9PHAE8.820e-11692.70GDP-mannose 4,6-dehydratase n=6 Tax=Phaeophyceae T... [more]
A0A8J2SRK3_9STRA1.250e-8171.26GDP-mannose 4,6-dehydratase n=3 Tax=Pelagomonas ca... [more]
A0A4D9D4U1_9STRA2.790e-7966.85GDP-mannose 4,6-dehydratase n=1 Tax=Nannochloropsi... [more]
A0A835Z0Z6_9STRA3.810e-7966.67GDP-mannose 4,6-dehydratase n=1 Tax=Tribonema minu... [more]
K0T9K6_THAOC5.340e-7768.97GDP-mannose 4,6-dehydratase n=1 Tax=Thalassiosira ... [more]
A0A482T0S9_9ARCH1.520e-7664.44GDP-mannose 4,6-dehydratase n=1 Tax=archaeon TaxID... [more]
A0A7S2VZB8_9STRA2.950e-7665.00GDP-mannose 4,6-dehydratase n=1 Tax=Eucampia antar... [more]
A0A7S2XZ47_9STRA4.900e-7663.84GDP-mannose 4,6-dehydratase n=1 Tax=Fibrocapsa jap... [more]
F0YLN7_AURAN6.130e-7665.34GDP-mannose 4,6-dehydratase n=2 Tax=Aureococcus an... [more]
B8C1P6_THAPS2.680e-7568.39GDP-mannose 4,6-dehydratase n=2 Tax=Thalassiosiral... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9320contigS-firma_M_contig9320:134..3050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score356.7
Seed ortholog evalue6.3e-96
Seed eggNOG ortholog2880.D8LTN7
Preferred nameGMDS
KEGG rclassRC00402
KEGG koko:K01711
KEGG ReactionR00888
KEGG Pathwayko00051,ko00520,ko01100,map00051,map00520,map01100
GOsGO:0000003,GO:0000166,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007276,GO:0007281,GO:0007292,GO:0008150,GO:0008152,GO:0008446,GO:0009058,GO:0009225,GO:0009226,GO:0009636,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019673,GO:0019953,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0032501,GO:0032502,GO:0032504,GO:0034641,GO:0034654,GO:0036094,GO:0042221,GO:0042350,GO:0042351,GO:0042802,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0046368,GO:0046483,GO:0048037,GO:0048468,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051302,GO:0051704,GO:0051716,GO:0055086,GO:0065007,GO:0070401,GO:0071704,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:2000035
EggNOG free text desc.GDP-mannose 4,6-dehydratase activity
EggNOG OGsCOG1089@1,KOG1372@2759
EC4.2.1.47
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size1469
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9320.20281.1prot_S-firma_M_contig9320.20281.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9320 145..2123 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828762.2874002-UTR-S-firma_M_contig9320:133..1441622828762.2874002-UTR-S-firma_M_contig9320:133..144Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9320 134..144 +
1697105147.3075366-UTR-S-firma_M_contig9320:133..1441697105147.3075366-UTR-S-firma_M_contig9320:133..144Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9320 134..144 +
1622828762.3616033-UTR-S-firma_M_contig9320:2123..30501622828762.3616033-UTR-S-firma_M_contig9320:2123..3050Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9320 2124..3050 +
1697105147.377566-UTR-S-firma_M_contig9320:2123..30501697105147.377566-UTR-S-firma_M_contig9320:2123..3050Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9320 2124..3050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828762.3066356-CDS-S-firma_M_contig9320:144..2901622828762.3066356-CDS-S-firma_M_contig9320:144..290Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9320 145..290 +
1697105147.3235154-CDS-S-firma_M_contig9320:144..2901697105147.3235154-CDS-S-firma_M_contig9320:144..290Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9320 145..290 +
1622828762.3221436-CDS-S-firma_M_contig9320:781..9021622828762.3221436-CDS-S-firma_M_contig9320:781..902Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9320 782..902 +
1697105147.336083-CDS-S-firma_M_contig9320:781..9021697105147.336083-CDS-S-firma_M_contig9320:781..902Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9320 782..902 +
1622828762.336409-CDS-S-firma_M_contig9320:1288..14291622828762.336409-CDS-S-firma_M_contig9320:1288..1429Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9320 1289..1429 +
1697105147.3570006-CDS-S-firma_M_contig9320:1288..14291697105147.3570006-CDS-S-firma_M_contig9320:1288..1429Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9320 1289..1429 +
1622828762.3483577-CDS-S-firma_M_contig9320:2000..21231622828762.3483577-CDS-S-firma_M_contig9320:2000..2123Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9320 2001..2123 +
1697105147.3672476-CDS-S-firma_M_contig9320:2000..21231697105147.3672476-CDS-S-firma_M_contig9320:2000..2123Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9320 2001..2123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9320.20281.1

>prot_S-firma_M_contig9320.20281.1 ID=prot_S-firma_M_contig9320.20281.1|Name=mRNA_S-firma_M_contig9320.20281.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=177bp
MHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKCIYLGNLDAKRD
WGHAKDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVQEAFAYVGTEITW
VGEGVEEYGHVKGEPENVLVRVDPRYFRPTEVELLLGDCTKAKKELGWVP
EITFKELVKDMMQSDIANVDAGNDHT*
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mRNA from alignment at S-firma_M_contig9320:134..3050+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9320.20281.1 ID=mRNA_S-firma_M_contig9320.20281.1|Name=mRNA_S-firma_M_contig9320.20281.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2917bp|location=Sequence derived from alignment at S-firma_M_contig9320:134..3050+ (Sphaerotrichia firma Sfir_13m male)
AGGCGTACGGCATGCACTTGACAAACGGCATCCTCTTCAACCACGAGAGC
CCCCGCCGCGGGCCCACCTTCGTGACCCGCAAGATCACCCGCGCCGTCGC
CCGCATCCACCGCGGCAAGCAGAAGTGCATCTACCTCGGGAACCTCGACG
CCAAGCGGTGAGAGTTCGGGTCTGGATCTCCTGAGAGAAAATCATGGAAT
CAAAGACAGAACCTCCCCACATTTGAGACGGGACTGACTGACTCCGTGGG
TTGGCTCAAAACGGTATTCCGTGCAGTGATGTTGTATTGGGGCCGGATCT
GTAGCCCGACTGGGTGGACTGTTTTTGTTTTGTTGCGTTGGCTGGTGCTC
TTTTTTTTCCGTTCAAGAGTTGTCGGGAAGTGTGAGATGGGACCTCTCAC
CCTTCCGCGGTGAGACAGGACTCTTTTTGGGAGTGTGGTGCCTCGACAGC
TAGTGGTGGCACCGTTGGTCCCGCTGAGCAGAAATAGTTGTTTTTTCGGA
AGTGCTTGTTGAGGTGCTGAGAGTAGTCGTCCAGTCTCGAGGCCGTGCAG
CATCTGATGTTGTGTGGTGTGTTTCGCAAGAGTTGCGCTTGTTTGTCGTC
GATGATGATAAAAACCTTTTCGCACGCGTTTTCGGTTTCTGCGACCAGTG
ACTGGGGCCACGCCAAGGACTACATCAAGGGGATGTGGCTCATGGTGCAG
AGGGACGAGCCCAGCGACTACGTGCTGTCCACCGGAGAGTGCCACAGCGT
CAAGGAGTTCGTCCAGGAGGTGCGTGCGATGCGCCTTGCCTTGTGTGCGT
CGAGGATGAAGGATGGGCGTCACCGACGAACGCACAAGACGGATGCGTTC
GACGCGTTCCGTCCTATGATATGATACTTCCACGCCGTGTCGGGTATTGG
TGATGCCGATTCCCTCTCTTACATGTAACGGAGTATTCTACACAACGCCA
GCGGTACACATCCGGCCTGCGAGTAAATCTTTCCAGGGGGGACACCGACC
CTTACCTCACCGTCCCAGACTACGGGCACGACCTCTCCACGTCCAACCAA
TCTTACCACGTTCGTTCGTTCGTTCCTTCCGTCTCGTTCTGTCGTCCTCT
CTCTCCTCTCCTCTCCTCTCCTGCTCCTGCTCCTCCTCCTCCTCCTCTTC
CTCAGGCCTTCGCGTACGTGGGCACCGAGATCACATGGGTAGGCGAGGGC
GTGGAGGAGTACGGCCACGTGAAGGGAGAGCCGGAGAACGTTCTCGTCCG
CGTGGACCCCCGCTACTTCCGGCCGACCGAGGTCGAGCTGCTCCTGGTGA
GCCGAGTGGAGTCAGCAGTGCATGCCGTTCACCGCTGTTCTGCGCCCATG
TTTCTGCAGCTGATGCACATGATACTTGCGCAGGGACTATAACTACCTGA
TGGGTGGGAGCGAGGTGTTTCGTAAACGTCGTCCCGCAACTGGGATTCTC
CGCCGTTGGACTAACCGGTGGCTAGCCTACAAACACGTCACTCGTGTGCT
TCGAATTCGTTGGGAAAGTCAAGCGTCGCGGGGCCGTATTATTTTCTGTT
TTGTTCTCTTGGAGGAAGAACGGCCCGGTTTCGCTTTCGTCAGGCTCAAG
AGCAAAAAGAACAAACCGATTTCATCGACCTCGGTGCACCTCCTATGTGT
CCGTGTCGCTACCCGCCGCTGAACCTTTCCAATTCGATTGAACTGTCTTG
CCTCTGTCTTGCCTCCTTTTCAAGCGGACGTCATCCCTGGCATCTCTTGT
CGTCTAGGTACAGTCAGCAGCGCCCGTCCCATGTCGTGTGGTACTGCTGT
AGATGTCACCGGGGCACCAACCTAACCTTGCTTCTTTGCGCTGTTCCTGC
ATCTCCGTTTTGTTCAGGGTGACTGCACCAAGGCGAAGAAGGAGCTGGGC
TGGGTGCCGGAGATCACCTTCAAGGAGCTTGTCAAGGACATGATGCAGTC
CGACATTGCCAACGTGGACGCCGGCAACGACCACACGTGAAGCGGCTCTC
CTGTGCGGGTTTTGTTTTTCCTTTTTTGCAAAGAGTGTCTTTTTTTTTTG
GTGCGATGATTTTGACTCCCCGGAAAACGATTGGCGTGAAGACTGCGTAT
AATCCTCAAAAAGTTTGCACCAAGAAGCAGAGAGGGGGAATGGGGGGCAC
AAAAGGAGCGAGCTTGATGAAGGTGTTCGACCCCCTTTTTTCTTAATGGA
AGAGCGGCCCCTGAGTCCGACAGACAGTTGAACAGGTTGACTGTATTGTT
TACTACTGTACTGTAGTTTCGTTCGTCGTGTTTTGAGACTCTGTCTCGCC
ATCTCTCCCGCTGATTTCGTGTGGGTTGGTTTTTTGCTGCTTGGAAGCCC
GTGGTGTAGGTCAAGGAGGCGCGACTTGCCGGGCGGAAGAACGTTTTTTG
ACGGGTCGGAGAATTTCGGTCTCGTTTTTGCTCGCCCTTGGCGCCTCGTT
CGCTCGCAATGGCAAGGAATTTGTTTTCCGGTCATGTTCGACGTTTCTTT
CTTGCGCTTGCTGCGGGGGGTGTTTTGTACGTGGCTTTTAGGATTTAGTT
TCAAGAAATTGTTGAGAACAAATGCGTTTTAATTAGTCGAAGGAGGTGTT
GGTCTGTTGTAAAAGAGCCCAAAAGAGTTGTGCTGTTGTTGGCCCCGAGG
GAACGGACGGTTCGATCGCGCCCTGAAACGAGTTCTAAATATGATATCAG
TCCCCCGGGTGGAACGACTATTTACGGGACGGACGTATACGGCTGACGAA
TGTAGAAAATTTACTAAAACACTATTGGCAGATTGTTCCAATACCTCAAG
ATTCGTGAGAAAGAGGTCTGCAAGGAGAGGATACTTGCAGCAACCGCGCG
AACCTCTCCGGGTAGATTAGATAGCGCCGATACGCAGTATTGTTGCTGAT
GGCACACCAAAGGCGAG
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Coding sequence (CDS) from alignment at S-firma_M_contig9320:134..3050+

>mRNA_S-firma_M_contig9320.20281.1 ID=mRNA_S-firma_M_contig9320.20281.1|Name=mRNA_S-firma_M_contig9320.20281.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1062bp|location=Sequence derived from alignment at S-firma_M_contig9320:134..3050+ (Sphaerotrichia firma Sfir_13m male)
ATGCACTTGACAAACGGCATCCTCTTCAACCACGAGAGCCCCCGCCGCGG
GCCCACCTTCGTGACCCGCAAGATCACCCGCGCCGTCGCCCGCATCCACC
GCGGCAAGCAGAAGTGCATCTACCTCGGGAACCTCGACGCCAAGCGATGC
ACTTGACAAACGGCATCCTCTTCAACCACGAGAGCCCCCGCCGCGGGCCC
ACCTTCGTGACCCGCAAGATCACCCGCGCCGTCGCCCGCATCCACCGCGG
CAAGCAGAAGTGCATCTACCTCGGGAACCTCGACGCCAAGCGTGACTGGG
GCCACGCCAAGGACTACATCAAGGGGATGTGGCTCATGGTGCAGAGGGAC
GAGCCCAGCGACTACGTGCTGTCCACCGGAGAGTGCCACAGCGTCAAGGA
GTTCGTCCAGGAGTGACTGGGGCCACGCCAAGGACTACATCAAGGGGATG
TGGCTCATGGTGCAGAGGGACGAGCCCAGCGACTACGTGCTGTCCACCGG
AGAGTGCCACAGCGTCAAGGAGTTCGTCCAGGAGGCCTTCGCGTACGTGG
GCACCGAGATCACATGGGTAGGCGAGGGCGTGGAGGAGTACGGCCACGTG
AAGGGAGAGCCGGAGAACGTTCTCGTCCGCGTGGACCCCCGCTACTTCCG
GCCGACCGAGGTCGAGCTGCTCCTGGCCTTCGCGTACGTGGGCACCGAGA
TCACATGGGTAGGCGAGGGCGTGGAGGAGTACGGCCACGTGAAGGGAGAG
CCGGAGAACGTTCTCGTCCGCGTGGACCCCCGCTACTTCCGGCCGACCGA
GGTCGAGCTGCTCCTGGGTGACTGCACCAAGGCGAAGAAGGAGCTGGGCT
GGGTGCCGGAGATCACCTTCAAGGAGCTTGTCAAGGACATGATGCAGTCC
GACATTGCCAACGTGGACGCCGGCAACGACCACACGTGAGGTGACTGCAC
CAAGGCGAAGAAGGAGCTGGGCTGGGTGCCGGAGATCACCTTCAAGGAGC
TTGTCAAGGACATGATGCAGTCCGACATTGCCAACGTGGACGCCGGCAAC
GACCACACGTGA
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