mRNA_S-firma_M_contig93.20254.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig93.20254.1
Unique NamemRNA_S-firma_M_contig93.20254.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig93.20254.1 vs. uniprot
Match: D7FRK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK4_ECTSI)

HSP 1 Score: 373 bits (958), Expect = 1.400e-125
Identity = 219/328 (66.77%), Postives = 243/328 (74.09%), Query Frame = 2 
Query:   83 NPVASLVLLPSAAERLPFPFRALAQTPQLTLFLAGGGYLGFLVLFLPLYAVSFLVTATGAWFVLLGAVYMGGRGLTRTISYPGASKQIQRDIELEYTKSVSGRLVSFANGLRLWLQLVRDVTVVPSAMGHFRVLHEELRERAQRGDVWVLTRALEEVSS-ALNQVRAHGGGLLAAGVVADGNIGAAATAXXXXXXXXXXXXXXEAESLLKCLAELLPTLEEALGMADKGVFLHLRWLRRVPVQLPRLRPLRRQRLPQQNQQGRAGGVAAASVARHAQVDLLVLDRSFSSLSAVAQRLMGGWTKWAIWGFTGWDAHVAADYLACRCYKV 1063
            + VASLVLLPSAAERLPFPFRALAQTPQLTL LAGGGY+ FLVLFLPLYAVSFLVTATGAW VLLG VY+GGRGLTRTISYPGASKQIQRDIELEYTK VS RL                                ELR+R++ GDVWVLTRALEE+++ A   +    GG+  AG             XXXX          EAESLL+CL EL+PTLEEA G+AD+G+ L LR +RRVP+QLP LR +R + LP+Q+QQGR  GVAAASVARH+QVDLL+LDRSFSSLSAVAQRLMGGWTKWAIWGFTGWDAHVAADYLACRCYK 
Sbjct:   32 SAVASLVLLPSAAERLPFPFRALAQTPQLTLVLAGGGYVTFLVLFLPLYAVSFLVTATGAWLVLLGTVYVGGRGLTRTISYPGASKQIQRDIELEYTKHVSSRL--------------------------------ELRDRSRGGDVWVLTRALEELTAHASMPMEEAAGGMRGAGGXXXXXXXXXXX-XXXXANTLAPSAFAEAESLLECLTELMPTLEEAFGLADEGLVLQLRRVRRVPLQLPGLRAIRWEGLPRQHQQGR--GVAAASVARHSQVDLLILDRSFSSLSAVAQRLMGGWTKWAIWGFTGWDAHVAADYLACRCYKA 324
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BLAST of mRNA_S-firma_M_contig93.20254.1 vs. uniprot
Match: A0A6H5L6P2_9PHAE (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6P2_9PHAE)

HSP 1 Score: 343 bits (879), Expect = 1.470e-105
Identity = 261/634 (41.17%), Postives = 281/634 (44.32%), Query Frame = 2 
Query:   26 MVLGYTRVVDCLVGVVSSWNPVASLVLLPSAAERLPFPFRALAQTPQLTLFLAGGGYLGFLVLFLPLYAVSFLVTATGAWFVLLGAVYMGGRGLTRTISYPGASKQIQRDIELEYTKSVSGRLVSFANGLRLWLQLVRDVTVVPSAMGHFRVLHEELRERAQRGDVWVLTRALEEVSSA-------LNQVRAHGGGLLAAGVVADGNIGAAATAXXXXXXXXXXXXXXEAESLLKCLAELLPTLEEALGMADK-----------------------------GVFL--------------HLR--------------------------------------------------------------------------------------WLRRVPVQ------LPRLRPLRRQRLPQ---------------------QNQQGRA----------------------------------------------------------------------------------------------------------------------------GGVAAASVARHAQVDLLVLDRSFSSLSAVAQRLMGGWTKWAIWGFTGWDAHVAADYLACRCYKVR 1066
            MVLGY+RVV+CLVG+VS W+ VASLVLLPSAAERLPFPFRALAQTPQLTL LAGGGY+ FLVLFLPLYAVSFLVTATGAW VLLG VYMGGRGLTRTISYPGASKQIQRDIELEYTK VS RLVSFAN LRLWLQLVRDVTVVPSAM HFRVLH+ELR+R++ GDVWVLTRALEEVS           +     GG +                XXXXX         EAESLL+CLAEL+PTLEEA G+AD+                              VF               HLR                                                                                      W  R P +      L R   L R    Q                     +   GR+                                                                                                                            GGVAAASVARH+QVDLL+LDRSFSSLSAVAQRLMGGWTKWAIWGFTGWDAHVAADYLACRCYK R
Sbjct:    1 MVLGYSRVVECLVGIVSPWSAVASLVLLPSAAERLPFPFRALAQTPQLTLVLAGGGYVTFLVLFLPLYAVSFLVTATGAWLVLLGTVYMGGRGLTRTISYPGASKQIQRDIELEYTKHVSSRLVSFANALRLWLQLVRDVTVVPSAMSHFRVLHQELRDRSRGGDVWVLTRALEEVSDGEVPTGVERGREGEEAGGRMRGAXXXXXXXXXXXXXXXXXXNTLAPSALAEAESLLECLAELMPTLEEAFGLADELSQCSSTQDFDRSRQTLLVPGVRNNDRIAEVFSLLEALATRVMKLSRHLRSRSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNTGESRFPGGIVKSWWRARYPYEGAAGFGLMREEMLIRSNARQIWLAMSDGTLLDCCYCKAYGGREGTGRSSXXXXXXXEGVGGGLPAAAGRXXXXXSDDGVGEGGERRSTGCVLFCNPNAGYYESMVLAGEGGRNWVSFYTSVGCDVFLFNYRGYGRSGGKASPANINKDVREIVTYLRENVGVTRLAVHGESIGGVAAASVARHSQVDLLILDRSFSSLSAVAQRLMGGWTKWAIWGFTGWDAHVAADYLACRCYKAR 634
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BLAST of mRNA_S-firma_M_contig93.20254.1 vs. uniprot
Match: A0A835YTB0_9STRA (Hydrolase_4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB0_9STRA)

HSP 1 Score: 144 bits (362), Expect = 3.930e-34
Identity = 139/478 (29.08%), Postives = 190/478 (39.75%), Query Frame = 2 
Query:   44 RVVDCLVGVVSSWNPVASLVLLPSAAERLPFPFRALAQTPQLTLFLAGGGYLGFLVLFLPLYAVSFLVTATGAWFVLLGAVYMGGRGLTRTISYPGASKQIQRDIELEYTKSVSGRLVSFANGLRLWLQLVRDVTVVPSAMGHFRVLHEELRERAQRGDVW-----VLTRALEEVSSALNQVRAHGG-----------------------------------------------GLLAAGVVAD---------------------------GNIGAAATAXXXXXXXXXXXXXXEAESLLKCLAELLPTLE----------EALGMADKGVFL-------------------HLRWL-------------------RRVPVQLP-RLRP--------LR-RQRLPQQNQQGRA-GGVAAASVARHAQVDLLVLDRSFSSLSAVAQRLMGGWTKWAIWGFTGWDAHVAADYLACRCYKV 1063
            R+V+ L G+  S  P+ASLVLLPSAA+RLPFP+  + +TP + +   G  Y  F  L+LPLY +SF VT+ GA  VL G V  GGR L R +S+PG+S  ++R+IE EY K  + RL + A  L+ WLQ+V   +  P     FR LH ++    Q   +       ++  +EE    + Q     G                                               G+L    +AD                           G++  A  A                + LLK   E+L   E          EA+ +  +   L                   H  W                    R   V  P RL+         LR RQ +      G + GG+ AA+ A   QVDL VLDR+FSSL A AQRLMG WT  A+W  T W  +VA D++AC C K+
Sbjct:    3 RLVELLAGMADSRRPLASLVLLPSAADRLPFPWGPITRTPPVAVACGGAAYAFFFALWLPLYLISFAVTSGGAGLVLAGGVVYGGRALARALSFPGSSSYVRREIEKEYAKYTAARLAAVAMCLKQWLQVVGGSSAFPGNALQFRELHRDVTGMFQEQGLMSCLAAAVSALVEEAGEQVPQQDTDPGDAQAEPAVREAPMATAGSTPKTANKKALCLNATAGALPTATAAVDACGMLTCNSLADFVRARGTLLSSAYRSLQGEGGGTGGRRGSLPPAKPAVAALNGQPSPRIGLVMQDLLKLTEEMLALAEAVKPPPDPPDEAMALPGQRCVLFCNPNAGFYEGMCLGAGTEHRDWASYYSAIGCHVFLFNYRGFGRSQGVPTPARLQADACEAVQYLRERQGMQHVMVHGESIGGMVAAAAAARCQVDLAVLDRTFSSLPAAAQRLMGTWTNPAMWALTQWSTNVARDFIACDCAKL 480
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BLAST of mRNA_S-firma_M_contig93.20254.1 vs. uniprot
Match: A0A7S2RNC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RNC6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 9.130e-8
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 2 
Query:  872 GGVAAASVARHAQVDLLVLDRSFSSLSAVAQRLMGGWTKWAIWGFTGWDAHVAADYLACRCYKV 1063
            GG+ A S   ++ VDLL++DR+F++L AVAQ L+GGWT+ A+   T WD  V   YL C CYKV
Sbjct:  417 GGMVACSA--NSIVDLLIVDRTFANLGAVAQYLVGGWTRGALRLVTCWDTDVVQLYLNCPCYKV 478
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BLAST of mRNA_S-firma_M_contig93.20254.1 vs. uniprot
Match: A0A7S2V181_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V181_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.170e-7
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 2 
Query:  872 GGVAAASVARHAQVDLLVLDRSFSSLSAVAQRLMGGWTKWAIWGFTGWDAHVAADYLACRCYKV 1063
            GG+ AAS+AR+AQ+D +V DR+F  + A A RL+  W   A+   TGW   VA D+L   C K+
Sbjct:    3 GGMVAASMARYAQLDGVVCDRTFCDMEAAANRLVASWAGGAMRLVTGWHTDVAEDFLMASCPKL 66
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BLAST of mRNA_S-firma_M_contig93.20254.1 vs. uniprot
Match: W4GXK4_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GXK4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.460e-6
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 2 
Query:  872 GGVAAASVARHA-QVDLLVLDRSFSSLSAVAQRLMGGWTKWAIWGFTGWDAHVAADYLACRCYKV 1063
            GG+ A  VA+HA  ++LLV DR+F++L AVAQRL+  W   A+   T W     A+YL  RC+KV
Sbjct:  464 GGMVATYVAKHAADIELLVADRTFANLPAVAQRLVASWAGKALTCVTRWQTDNVANYLDARCHKV 528
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BLAST of mRNA_S-firma_M_contig93.20254.1 vs. uniprot
Match: W4GVJ7_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GVJ7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.760e-6
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 2 
Query:  872 GGVAAASVARHA-QVDLLVLDRSFSSLSAVAQRLMGGWTKWAIWGFTGWDAHVAADYLACRCYKV 1063
            GG+ A  VA+HA  ++LLV DR+F++L AVAQRL+  W   A+   T W     A+YL  RC+KV
Sbjct:  464 GGMVATYVAKHAADIELLVADRTFANLPAVAQRLVASWAGKALTCVTRWQTDNVANYLDARCHKV 528
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BLAST of mRNA_S-firma_M_contig93.20254.1 vs. uniprot
Match: A0A7S4RNL7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RNL7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 9.780e-6
Identity = 28/86 (32.56%), Postives = 53/86 (61.63%), Query Frame = 2 
Query:  206 LVLFLPLYAVSFLVTATGAWFVLLGAVYMGGRGLTRTISYPGASKQIQRDIELEYTKSVSGRLVSFANGLRLW-LQLVRDVTVVPS 460
            LV+ +P + +SF+VT  G +  + G ++M GRG+ R +++PGAS ++  +IE E++K     L + A+ L+ + L ++   T  P+
Sbjct:   52 LVIIMPFWLLSFVVTELGVYVFIWGGIFMAGRGIVRLLAFPGASHRVYNEIETEFSKYALRMLENAASSLQEFCLAILSTTTPTPT 137
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BLAST of mRNA_S-firma_M_contig93.20254.1 vs. uniprot
Match: A0A482S5X3_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5X3_9ARCH)

HSP 1 Score: 55.1 bits (131), Expect = 1.700e-5
Identity = 44/161 (27.33%), Postives = 78/161 (48.45%), Query Frame = 2 
Query:   74 SSW-NPVASLVLLPSAAERLPFPFRALAQTPQLTLFLAGGGYLGFLVLFLPLYAVSFLVTATGAWFVLLGAVYMGGRGLTRTISYPGASKQIQRDIELEYTKSVSGRLVSFANGLRLWLQLVRDVTVVPSAMGHFRVLHEELRERAQRGDVWVLTRALEEV 553
            S W N      +  S A++L   FR +A +P + L  A   Y+ FL++F PL+ VSF +T+ G+  + L  ++     +TR+I++PG++   Q+ I  E  K +S  L + A        L+  +T    A+     +  ELR      ++W+  + L  +
Sbjct:   10 SPWFNSCLRFCVTSSLADQLHPAFRFIAYSPVIVLIAALVLYIVFLLVFTPLWLVSFGITSYGSLALSLVLLHYLAVYITRSIAFPGSNISTQQQISTETMKRISSYLENLATSTNNTCALLLLITSNQLALAELMNIQAELR------NIWLSAQYLPNI 164
[Close]
BLAST of mRNA_S-firma_M_contig93.20254.1 vs. uniprot
Match: A0A7S2JYG9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JYG9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.690e-5
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 2 
Query:  872 GGVAAASVAR-------HAQVDLLVLDRSFSSLSAVAQRLMGGWTKWAIWGFTG-WDAHVAADYLACRCYKV 1063
            GG+AAA  A        H +  LL+ DR+F +L AVAQRL+GGWT  AI  F   W+  VA DYL+  C K+
Sbjct:  394 GGMAAAGCASILSSRGGHDKPSLLICDRTFCNLEAVAQRLVGGWTANAIRIFAPFWNMDVAGDYLSASCPKI 465
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig93.20254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FRK4_ECTSI1.400e-12566.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6P2_9PHAE1.470e-10541.17AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
A0A835YTB0_9STRA3.930e-3429.08Hydrolase_4 domain-containing protein n=1 Tax=Trib... [more]
A0A7S2RNC6_9STRA9.130e-851.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2V181_9STRA3.170e-745.31Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W4GXK4_9STRA2.460e-647.69Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
W4GVJ7_9STRA2.760e-647.69Uncharacterized protein n=10 Tax=Aphanomyces astac... [more]
A0A7S4RNL7_9STRA9.780e-632.56Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A482S5X3_9ARCH1.700e-527.33Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S2JYG9_9STRA2.690e-547.22Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig93contigS-firma_M_contig93:47723..53925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_002680.1
Exons8
Model size1090
Cds size1065
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828759.1161795-UTR-S-firma_M_contig93:47722..477471622828759.1161795-UTR-S-firma_M_contig93:47722..47747Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig93 47723..47747 +
1697105145.5486407-UTR-S-firma_M_contig93:47722..477471697105145.5486407-UTR-S-firma_M_contig93:47722..47747Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig93 47723..47747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828759.1294665-CDS-S-firma_M_contig93:47747..478031622828759.1294665-CDS-S-firma_M_contig93:47747..47803Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig93 47748..47803 +
1697105145.5591028-CDS-S-firma_M_contig93:47747..478031697105145.5591028-CDS-S-firma_M_contig93:47747..47803Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig93 47748..47803 +
1622828759.143848-CDS-S-firma_M_contig93:48602..486771622828759.143848-CDS-S-firma_M_contig93:48602..48677Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig93 48603..48677 +
1697105145.5688353-CDS-S-firma_M_contig93:48602..486771697105145.5688353-CDS-S-firma_M_contig93:48602..48677Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig93 48603..48677 +
1622828759.1562152-CDS-S-firma_M_contig93:49026..492641622828759.1562152-CDS-S-firma_M_contig93:49026..49264Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig93 49027..49264 +
1697105145.579847-CDS-S-firma_M_contig93:49026..492641697105145.579847-CDS-S-firma_M_contig93:49026..49264Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig93 49027..49264 +
1622828759.1695626-CDS-S-firma_M_contig93:49667..498891622828759.1695626-CDS-S-firma_M_contig93:49667..49889Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig93 49668..49889 +
1697105145.590291-CDS-S-firma_M_contig93:49667..498891697105145.590291-CDS-S-firma_M_contig93:49667..49889Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig93 49668..49889 +
1622828759.1817288-CDS-S-firma_M_contig93:50318..504651622828759.1817288-CDS-S-firma_M_contig93:50318..50465Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig93 50319..50465 +
1697105145.6012547-CDS-S-firma_M_contig93:50318..504651697105145.6012547-CDS-S-firma_M_contig93:50318..50465Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig93 50319..50465 +
1622828759.193366-CDS-S-firma_M_contig93:53284..533961622828759.193366-CDS-S-firma_M_contig93:53284..53396Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig93 53285..53396 +
1697105145.6094394-CDS-S-firma_M_contig93:53284..533961697105145.6094394-CDS-S-firma_M_contig93:53284..53396Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig93 53285..53396 +
1622828759.2051177-CDS-S-firma_M_contig93:53463..534981622828759.2051177-CDS-S-firma_M_contig93:53463..53498Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig93 53464..53498 +
1697105145.6177459-CDS-S-firma_M_contig93:53463..534981697105145.6177459-CDS-S-firma_M_contig93:53463..53498Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig93 53464..53498 +
1622828759.2189925-CDS-S-firma_M_contig93:53745..539251622828759.2189925-CDS-S-firma_M_contig93:53745..53925Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig93 53746..53925 +
1697105145.625913-CDS-S-firma_M_contig93:53745..539251697105145.625913-CDS-S-firma_M_contig93:53745..53925Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig93 53746..53925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig93.20254.1prot_S-firma_M_contig93.20254.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig93 47748..53925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig93.20254.1

>prot_S-firma_M_contig93.20254.1 ID=prot_S-firma_M_contig93.20254.1|Name=mRNA_S-firma_M_contig93.20254.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=355bp
MVLGYTRVVDCLVGVVSSWNPVASLVLLPSAAERLPFPFRALAQTPQLTL
FLAGGGYLGFLVLFLPLYAVSFLVTATGAWFVLLGAVYMGGRGLTRTISY
PGASKQIQRDIELEYTKSVSGRLVSFANGLRLWLQLVRDVTVVPSAMGHF
RVLHEELRERAQRGDVWVLTRALEEVSSALNQVRAHGGGLLAAGVVADGN
IGAAATAAAAGANALAPSAAAEAESLLKCLAELLPTLEEALGMADKGVFL
HLRWLRRVPVQLPRLRPLRRQRLPQQNQQGRAGGVAAASVARHAQVDLLV
LDRSFSSLSAVAQRLMGGWTKWAIWGFTGWDAHVAADYLACRCYKVRRPR
LAFL*
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mRNA from alignment at S-firma_M_contig93:47723..53925+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig93.20254.1 ID=mRNA_S-firma_M_contig93.20254.1|Name=mRNA_S-firma_M_contig93.20254.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=6203bp|location=Sequence derived from alignment at S-firma_M_contig93:47723..53925+ (Sphaerotrichia firma Sfir_13m male)
CGAGGGGAGGGCAGGCTCTCCAGTGATGGTTCTGGGATATACACGAGTCG
TGGATTGTCTTGTGGGCGTCGTATCATCATGGTAAGCTTTCCTGCGTGCG
ATCCGGTCGCGCGAGTAGGTTGGAATGTTCTCACCAAGCTCCGCCGGTGC
CCGTCCCGTGCCTCTTGGCTGAGCTTTGTACCAGCTAGGTTACCAGAGCA
GTGTGAGGGGTGGTACAGCGGTCTTCTTGAAAGTCGAGAGGATACGCGTA
CGTCCAGGGTATCCACGTTGTTATGTTTGCGAGTGTGAGAGCTCTGGTGC
TGTTGCTGAGCGGTGATTCAGTCTGCAAGAGCGACGGCGCAGGTGCAGCC
CTCCCCGCGGCAACGCGACGTGTGACTGCTGTTACTCGACGAGGTAGAAT
ATACCATGGCGTGGCGTGTCAGTGCACGTCACCGTCAAACAGACCGGTGT
ACGGCATCGATCAGTGGGTAAAAAAAAAGTTGCAAGCCACGCAGCGCGAG
ATTTGTACTGGTACTCAGCAACGGGGCCCCGCATTTCCCCGCACTGCTGT
GTGCTCTCGGTACACAGATATCATACATGCATGCGAACACAACGGGCCAC
GGGCGCTGGTCTGCTCGCTTTGCTGCGTACAGCAGGCGATGTATCCGCCC
TGAACGTATCTGCGCGTGATGTCCGTTGAGGGCTGCCACACTGCAAGACT
GAAATACTACATTTCGCGGCCTGCTCGCAATGGGGGTCTAGACTAGTACC
TCTGCTGTACCCAAATTACGTACACCGTCAAGAGACTCTACCCCCCGGAC
TTGCCTCTCAACCGCATCGACGAACGCGCCGACGCAACCAACGCAACGCA
AACTAAGTCCCTTCCTTGTGCCTTTTGCAGGAACCCGGTGGCGTCTCTCG
TGCTGCTTCCGTCAGCGGCCGAGCGACTTCCTTTCCCTTTCCGAGCGCTG
GCGCAGTGAGTACCAATGGCCAGTGCATCCACATTCCTCTTAGACGTTTG
CTCTCTAGGTGTGGTGTGGTACGTACAACGGCTGCCCGTGTAGCGGTTAC
GGGCGCGGAATGGCCTAACGACGTCTACCCCCCTCTCTGCTGTCTCCACG
ACTTACCACCTGTATCCGACGACGGCAGCGGTAGGTATTCTTTTCACCCC
TCGGAGCTGATGCATCTATCCCCGCGTCTCGTTCCTACCGAGGTATTTCA
CGCGGTCTGTTTTCCGCGGTGTGGGCGTCCACAATCAAACCCCACTGTTC
GCGCGCCGGTACACCATGACGCTGCAATATGGTGCTGTCCCAAACGCGAC
GCAGGACTCCGCAGCTGACGCTCTTCTTGGCCGGGGGAGGCTACCTAGGC
TTTCTGGTCCTGTTCCTGCCTCTCTACGCCGTCTCGTTCCTCGTGACCGC
GACGGGGGCGTGGTTCGTCCTGCTCGGAGCCGTGTACATGGGGGGCAGGG
GCTTGACGAGGACCATCAGTTACCCCGGCGCCTCGAAGCAGATCCAGAGG
GATATCGAGCTGGAGTACACCAAGAGCGTCAGCGGTCGCCTGGTGAGAAA
GGCGCGGGCGTGCGCGTCCTCGTTGCGACCATGCTCGCAGCCTCAGCTGC
ACGTTGTACGGGTACCGTAGTCGAGGTCCGAACGACAACCGCTGTTTCCG
TGGTTTTGTGTGATGTATGGAGTATAAAATATACATGCATGGCGTCGTTG
TGTGGTCCTTTCAGGACTCCCCCCGCCCCCCCTGTTGATGCGGAGTGATC
CACACGTCACTGCCCCCCGACATGTTGAGAGCGAGTCCTATGTAGCACCA
GAAGGAACGGCGTTGCTCCGCCGACTGCTGTGGAAGGGAATACACATGCA
ATCATCCCGTCTCTTGCCGACGGCGATCTATATTCAGCACACACGACCAT
GAGTATGAGCACGAGCCCCCGCCTGCCCCCTCCTTCCAATTCAAGGTGTC
GTTTGCGAACGGGCTGCGGCTTTGGCTCCAGCTGGTTCGGGACGTGACAG
TCGTGCCCTCGGCCATGGGTCACTTCCGCGTGCTGCACGAGGAGCTCCGT
GAGAGGGCGCAGCGGGGGGATGTGTGGGTGCTGACGAGAGCGCTGGAAGA
GGTGAGCAGCGCGCTGAACCAAGTGAGGGCGCACGGGGGTGGTTTGCTTG
CTGCTGGCGTTGTTGCCGTAGGTGTGGGTAGGTGGGTAGGGTGGAGAGGG
GGGGTTGGTCTCTTGTTTCCCCGCAAACTCTCTCCCTCTTGTTGGCGTGA
AGTACTCCTACTTCCTACTTCGGCAACTTGTGCTCCCGTGCGTCCGGGTG
TGTTCGTAGAAACACGTCGGGCAGGATCCATCCTCCACTCTCCGCGTCAT
CGGCTCACGCGGAAAGGAAAAGTGGAGCAGATCCCCCGACAGCTACAATA
GTCATCGATCCCTCGAACCGACATTACTGTCCTTCTCCTAGCACTCTCTA
CGTGAGCCCTGCCCCCCCCTGCCTTGGCCTCACCCGCCTCTCCTCCCCTG
TCCGCCCCTCTCCTCCCCGCCCAAACAATTGTTGCCGCGCCTCCTTCCCT
CGGTGTTGTTTTTTAGTTGACGGCGAACGCTAGCAGGCCGATCGAGGACG
GCAACATCGGCGCCGCCGCCACCGCGGCCGCTGCGGGGGCAAACGCGCTG
GCCCCCTCGGCGGCCGCGGAGGCGGAATCGCTGCTCAAGTGCCTCGCGGA
GCTCTTGCCGACGCTGGAAGAGGCCTTGGGTATGGCCGACAAGGTGTGTT
CGTCTATCTTTTGGGGGGATTGGCGGGTTTTGAGGGGTACAGTTCTAGGG
GGGGGCGTGGGGGCGAGGGAGGGGCCGAGGTGAACGTTAACGTTGATTCA
CGCGTGCGACACGGAAAAAAATCGTTGCCGGTTCTAGGAGAAAACTTGCG
AACGAATGAGTGACGAGGTGCTGGTTGCTGGCGCTACGCGCGAGATGCAT
CTTTTTGATAGAAAAAAACTCACTGGGGCTACGTAAACCAAATAGTGCTG
CAACACCTGTCTCCTTTCGTGTGCTTGTAACGAACAAGTGTGCCCTGCGC
ATCGTTCCTCGCGCGTCAGCCACGTTGTGACGCGTTGTGACGCGTTGCGG
ATGTGGACTTCGAATGTCTCAACAAACCACTACCCTGTGCGCCCCCCCTC
AACATCGCTGTGACTAGCTTTCCGAGTGCAGCAGCACGCACGACTTTGAC
CGCGCGAGGCAGGCGTTGCTACTCCCGGGCGTCGGGAACAACGACCGGTG
AGTCTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTCGTTTTTAGATTGAG
AGCCTAGAAGGAAAAGCGTTAGCTACAAGGTAGAAGGCGGCCGTTCCATC
CCCTTCCGAGATGGAAACGCGGGCCCTGAGACGTCGACTGTTGTGTGTTC
GTCGTGTCCGCGTAGGCACAAGCGGTGAGGCGATTCCGTGCCCGTCCCGA
ACGCACTACCGTGTCTTCGATACAGAACGACGGAGCTATGCTACTCTTTC
TCGTTCAACGCTCCGTGTTCCTCCCTCTCTCTGTCTCCCTTGTGTCTCCG
TTTTCTCACCGCGGCCCGTCTGTTCTTTGCTCCTTGCCCCGTCATTTTCG
TCCGGCTGATGGCCGGTCTTCGCTTCCATCTCGACAACAACATCACATCA
AATCACATCACATCACATCACATCACGACACATCACGACACATCACACGC
ACGACACACCAGGTTCGCGGCGGTCTTCTCCACCCTCGAGGGCCTCGCCA
GCAGGGTCATGAAGCTGTCCCGGCAGCTCCGCTCCCGAAAAAAGAAGCCC
ACCCCGGCCTCAACCTCCTCCTCTTCCTCCTCGAGAGCGAGAACCGGCGG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCCCCCCCCGGGTGGCTCCT
TGGCCGCGGACGAAGAAGCGGGAGTCGGCCTCGGTGGTGGTGGTGACGAC
GACGACGACGACGACGACGGCAGCGGTGGTGAGGGAGGGGGGGTACCCAC
CGAGGAGACGCCGCCGGGCGGGGCCCCCAACGACTCCGGTTTCCCCGGCG
CGATCGTGAAGAGCTGGTGGAGGTCGAGGTACCCGTACGAGGGGGCCGCG
GGGTTCGGGCTCATGCGGGAGGAGATGCTGATCAAGAGCAACGCTCAGCA
GGTAACCGTAGCAGAGCATGTGTTTGTATGAGGGGGTGGGAAGGGAGGGG
TGGGGTGGAGAAGAAGAAAGTGGTTGTTCCAGGGGGGAGTTGGAATATTG
TGAGGGTTGGGAGGTTGAGGAGGTAGGCAGGCGGCAGGGGGTAGATCTCT
GTGTTGTCAACCGTGTGTGTGACCGCAAGCATGCATGTAATACAGCAGCT
TCCCTGTTCGCCGCGCCCGCGCTTTCGTGCAGTGTTTGCGGCCATGCCGC
TGGCGAGAGATTAAGAAGAGAATTGAATCACCTCCTGCTCAACCCTCCTT
TTTATTGTCCTGCCTCTCTCTGTGTTTTTGTTTGCTGCGCAAAATGCCTT
GGCCTCATTCTTGCTTGTGATTTGTCTCCTTGTCTTGCCGACAAGTAGAT
CTGGCTAGCCATGTCAGACGGAACCCTCCTGGACTGCTGCTACTGCAGAG
CGTACGGAGGGAGGAACGGGAGAGGTGGCGGCGGCGGCGGCGAGAGGAGC
GGACCCGGGGACGGGGGCCCCAGGGACGAGAGAAGCAGCACGGGGTGTGT
GCTGTTCTGCAACCCCAACGCGGGGTACTACGAGAGCATGGTGTTGGCGG
GCGAGGGCAGTCGAAATTGGTGAGCTTTTTTGTCCTTGGTGTGGTGTTGT
TGGCTTGTCGGCTAACCTTAAATAGTCTCCTGTCCAGTCTTGTCGTGGCG
CCTTTTGTTGGCTGAGGGTGCGCTATTTCGGTCCAGCACATTTTCGCGGG
TGCAGTGGGGATGAACGCAGGTTCTCGAGTGAAGGGAGGGGCATGCGGTG
TTTTTTTTTTGGGCTGTGCTTGGGCGATCGATACTCGGCGGGTTGGGACG
TAGGAGCTTGTCGTTGTCGTTGTTTGAAATGTCGTCGTGCAAGTGTACCA
TACGCCACAACTCTGCATCTGCGTTTTTTTGCCAAGTCGTGGTCGGGGGG
AACGTCGACCCCCTTGTCCCTGGTCGTCGTGCACGATTTTTCGTGTTGTT
TTGGTTGGAGGTTTGCTTCGGGCACACCGCCTCGGATGGGTGCACTAGTT
CTTCGGCGCTCTCCCGGCTGGTTGCGCGATGATTCGCCCTTTGCTCGTCG
GGTTGTGTCTGCGTGGGGTAATTTAACACGCGCGACTACCGCTATGATAC
AATCAGTGAGGGAGGTGCATGTACACAGATGCGTTAGCGCGTGATCTTGG
CGTTTTTCTGTATGGATTTACCTGCCGTCCGTGCGCCGTCCTTTTCTGTG
CGGCACGGCAGCCCGCCTGACCCTTATGTTACATACACTGCTGCTGTGCA
CGCCTTGCTTGCTCTTCCGTCGTGTGTTTGTTGTGGTCAACCTTTTCTCC
CCATGTGCGACGGACGCGACGATGTCGATCTATCCATCGTCACACTGCTG
TTGAACCGGAAGGGTGTCTTTCTACACCTCCGTTGGCTGCGACGTGTTCC
TGTTCAACTACCGCGGCTACGGCCGCTCCGGCGGCAGCGCCTCCCCCAGC
AGAATCAACAAGGACGTGCGGGAGGTGGTGGACTACCTCCGCGAGCAGGT
CGGGGTGAGCCGGCTGGCAGTCCACGGGGAGAGCATCGGAGGCGTCGCCG
CAGCCAGCGTCGCCAGACATGCGCAGGTGGGGCACGAACGCGTTTTTGAT
TTTTGATGCCACGTGCCTGATCCACGATTCTGGGCATGGCATGACGCCTT
TGTCCCTCCCCCCTCTGCGTCTCTCCGTGTGGTTGTCTTTGCGGTGATCA
ACTTTATCCCCGACACCCTTTCTCTCGCGCCTTACTGTATCCCACCTTAC
TACTGCTGTTTCCACGAAGATCTAAAACCGTATGCATGAATACGAACGCG
GACGCGGAAATGAACAACGTCAGGTCGACCTCCTGGTTTTGGACCGGTCT
TTCTCGAGTCTCTCCGCCGTGGCCCAGAGGCTCATGGGAGGCTGGACGAA
GTGGGCGATATGGGGCTTCACGGGCTGGGACGCCCACGTAGCCGCCGACT
ACCTGGCATGCCGGTGTTACAAGGTGCGTCGCCCCCGCCTCGCGTTCCTC
TAA
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Coding sequence (CDS) from alignment at S-firma_M_contig93:47723..53925+

>mRNA_S-firma_M_contig93.20254.1 ID=mRNA_S-firma_M_contig93.20254.1|Name=mRNA_S-firma_M_contig93.20254.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=2130bp|location=Sequence derived from alignment at S-firma_M_contig93:47723..53925+ (Sphaerotrichia firma Sfir_13m male)
ATGGTTCTGGGATATACACGAGTCGTGGATTGTCTTGTGGGCGTCGTATC
ATCATGATGGTTCTGGGATATACACGAGTCGTGGATTGTCTTGTGGGCGT
CGTATCATCATGGAACCCGGTGGCGTCTCTCGTGCTGCTTCCGTCAGCGG
CCGAGCGACTTCCTTTCCCTTTCCGAGCGCTGGCGCAGAACCCGGTGGCG
TCTCTCGTGCTGCTTCCGTCAGCGGCCGAGCGACTTCCTTTCCCTTTCCG
AGCGCTGGCGCAGACTCCGCAGCTGACGCTCTTCTTGGCCGGGGGAGGCT
ACCTAGGCTTTCTGGTCCTGTTCCTGCCTCTCTACGCCGTCTCGTTCCTC
GTGACCGCGACGGGGGCGTGGTTCGTCCTGCTCGGAGCCGTGTACATGGG
GGGCAGGGGCTTGACGAGGACCATCAGTTACCCCGGCGCCTCGAAGCAGA
TCCAGAGGGATATCGAGCTGGAGTACACCAAGAGCGTCAGCGGTCGCCTG
GACTCCGCAGCTGACGCTCTTCTTGGCCGGGGGAGGCTACCTAGGCTTTC
TGGTCCTGTTCCTGCCTCTCTACGCCGTCTCGTTCCTCGTGACCGCGACG
GGGGCGTGGTTCGTCCTGCTCGGAGCCGTGTACATGGGGGGCAGGGGCTT
GACGAGGACCATCAGTTACCCCGGCGCCTCGAAGCAGATCCAGAGGGATA
TCGAGCTGGAGTACACCAAGAGCGTCAGCGGTCGCCTGGTGTCGTTTGCG
AACGGGCTGCGGCTTTGGCTCCAGCTGGTTCGGGACGTGACAGTCGTGCC
CTCGGCCATGGGTCACTTCCGCGTGCTGCACGAGGAGCTCCGTGAGAGGG
CGCAGCGGGGGGATGTGTGGGTGCTGACGAGAGCGCTGGAAGAGGTGAGC
AGCGCGCTGAACCAAGTGAGGGCGCACGGGGGTGGTTTGCTTGCTGCTGG
CGTTGTTGCCGTGTCGTTTGCGAACGGGCTGCGGCTTTGGCTCCAGCTGG
TTCGGGACGTGACAGTCGTGCCCTCGGCCATGGGTCACTTCCGCGTGCTG
CACGAGGAGCTCCGTGAGAGGGCGCAGCGGGGGGATGTGTGGGTGCTGAC
GAGAGCGCTGGAAGAGGTGAGCAGCGCGCTGAACCAAGTGAGGGCGCACG
GGGGTGGTTTGCTTGCTGCTGGCGTTGTTGCCGACGGCAACATCGGCGCC
GCCGCCACCGCGGCCGCTGCGGGGGCAAACGCGCTGGCCCCCTCGGCGGC
CGCGGAGGCGGAATCGCTGCTCAAGTGCCTCGCGGAGCTCTTGCCGACGC
TGGAAGAGGCCTTGGGTATGGCCGACAAGGACGGCAACATCGGCGCCGCC
GCCACCGCGGCCGCTGCGGGGGCAAACGCGCTGGCCCCCTCGGCGGCCGC
GGAGGCGGAATCGCTGCTCAAGTGCCTCGCGGAGCTCTTGCCGACGCTGG
AAGAGGCCTTGGGTATGGCCGACAAGGGTGTCTTTCTACACCTCCGTTGG
CTGCGACGTGTTCCTGTTCAACTACCGCGGCTACGGCCGCTCCGGCGGCA
GCGCCTCCCCCAGCAGAATCAACAAGGACGTGCGGGAGGGTGTCTTTCTA
CACCTCCGTTGGCTGCGACGTGTTCCTGTTCAACTACCGCGGCTACGGCC
GCTCCGGCGGCAGCGCCTCCCCCAGCAGAATCAACAAGGACGTGCGGGAG
GCGTCGCCGCAGCCAGCGTCGCCAGACATGCGCAGGCGTCGCCGCAGCCA
GCGTCGCCAGACATGCGCAGGTCGACCTCCTGGTTTTGGACCGGTCTTTC
TCGAGTCTCTCCGCCGTGGCCCAGAGGCTCATGGGAGGCTGGACGAAGTG
GGCGATATGGGGCTTCACGGGCTGGGACGCCCACGTAGCCGCCGACTACC
TGGCATGCCGGTGTTACAAGGTGCGTCGCCCCCGCCTCGCGTTCCTCTAA
GTCGACCTCCTGGTTTTGGACCGGTCTTTCTCGAGTCTCTCCGCCGTGGC
CCAGAGGCTCATGGGAGGCTGGACGAAGTGGGCGATATGGGGCTTCACGG
GCTGGGACGCCCACGTAGCCGCCGACTACCTGGCATGCCGGTGTTACAAG
GTGCGTCGCCCCCGCCTCGCGTTCCTCTAA
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