mRNA_S-firma_M_contig9266.20210.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9266.20210.1
Unique NamemRNA_S-firma_M_contig9266.20210.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9266.20210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9266contigS-firma_M_contig9266:1630..2942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size736
Cds size420
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9266.20210.1prot_S-firma_M_contig9266.20210.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9266 2523..2942 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828753.878647-UTR-S-firma_M_contig9266:1629..17361622828753.878647-UTR-S-firma_M_contig9266:1629..1736Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9266 1630..1736 -
1697105142.110589-UTR-S-firma_M_contig9266:1629..17361697105142.110589-UTR-S-firma_M_contig9266:1629..1736Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9266 1630..1736 -
1622828753.8915086-UTR-S-firma_M_contig9266:2315..25221622828753.8915086-UTR-S-firma_M_contig9266:2315..2522Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9266 2316..2522 -
1697105142.12045-UTR-S-firma_M_contig9266:2315..25221697105142.12045-UTR-S-firma_M_contig9266:2315..2522Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9266 2316..2522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828753.9081123-CDS-S-firma_M_contig9266:2522..29421622828753.9081123-CDS-S-firma_M_contig9266:2522..2942Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9266 2523..2942 -
1697105142.131369-CDS-S-firma_M_contig9266:2522..29421697105142.131369-CDS-S-firma_M_contig9266:2522..2942Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9266 2523..2942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9266.20210.1

>prot_S-firma_M_contig9266.20210.1 ID=prot_S-firma_M_contig9266.20210.1|Name=mRNA_S-firma_M_contig9266.20210.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=140bp
IVHTHRTQPHCYHSLTISRQRSTLFLSFCLQPPQSPTHSLLHPESGANSM
RANTYPTVSLPINSTNTARPHPYHRSRRPPTRLWPFSWTPPSPPSFLRGG
TPRGPWSTLKKPTDHSRHQPSRIKRRAALLERRHLLSAW*
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mRNA from alignment at S-firma_M_contig9266:1630..2942-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9266.20210.1 ID=mRNA_S-firma_M_contig9266.20210.1|Name=mRNA_S-firma_M_contig9266.20210.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1313bp|location=Sequence derived from alignment at S-firma_M_contig9266:1630..2942- (Sphaerotrichia firma Sfir_13m male)
ATCGTCCACACACACAGAACACAGCCCCACTGTTACCATTCCCTGACTAT
ATCGCGTCAGCGTTCCACTTTATTTCTCTCTTTTTGCCTTCAACCACCAC
AATCCCCTACTCACAGCCTTCTCCATCCCGAGTCAGGAGCGAACAGCATG
CGAGCCAACACGTATCCCACCGTTTCGCTGCCGATTAACTCGACGAACAC
AGCCCGCCCGCACCCGTACCACCGCTCAAGACGACCGCCGACCCGCCTCT
GGCCCTTCTCCTGGACTCCACCAAGCCCTCCCTCGTTTCTGCGAGGAGGA
ACCCCTCGTGGTCCCTGGTCAACCCTCAAAAAGCCTACAGACCATTCAAG
ACACCAGCCCTCCAGGATCAAGCGGCGAGCTGCTCTCCTCGAACGGCGAC
ATCTTCTCTCCGCGTGGTGAGCGTGGCAGTGAACGTGGTGATGAGCATGA
GGTGGTCCAGACCGCGAGCGTGCGACTATTTCCCTCGCTCAGAGTACGGT
GGAGCTGGAGAGGCAGGCGAGGATTCGAGAAGGGGAAAACGGTCGTTGTA
CAACCAAGACGCAGAGGATCCAGAGCTCGGTGCGCAGGAGTCCAGAGTCG
ACGGAAGCTCCCACCCATGTGCAAAAGGTAAATTGCGCACAGAATCCCGT
TTCGTTGTCGACGAGAGTTGAAAGCGTGTGCGTGTGTTGCGGTGATCATC
TACCCTGCAGGATGATGCACGTGCAGGATGCATGCACGTCGTGCGTCCCT
TGCCGCACTTTGCGTGGGTATTAGTGTGCGCGGTTTTTTCTGCGGTGGCA
CTCTCGACCAGCGGACACGTGTGGATTTGGTGGGAAAATTCTTGCCTCAC
AACCCCACAGAAAGTAGTCGCACACAGCAGTAGGTCTGCGTGTTTGTCTA
CGTGTTTGTCGGAATATTGCAACGTACGAAGATAATCGAAGTGCCCACCA
CTCCCCGCTGGAACCCCGTGGGGTCTCTCGCAACCGTGACGTATCATACT
AGTTCGAAAAAACGAAAACGAGTCAAAACTGTTCTCCTGCCTTCCTTCGA
GAGGGGTGTGGGTGATATTTTGGGCGCCACGAGCATGCAGACGCCCAAAC
CCTCCCATTCACAGCGTCGACCAGCATGGCAAGACATGATGATTCTTGTT
CGGTGCTTTCCTGTCCCACCGCCTTTCTGTCACTTGTTGTGCCACCGAAA
ACTTAGGTGGACGATCGCTCCGCCGGGCGACCGAGAGGCAATCTCCTCGT
CGGCTTTCTTCCGATAGGGTTGGGAGTAGGGCAAGACACGCCCATGGACT
ATGCCGCCGTTGA
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Coding sequence (CDS) from alignment at S-firma_M_contig9266:1630..2942-

>mRNA_S-firma_M_contig9266.20210.1 ID=mRNA_S-firma_M_contig9266.20210.1|Name=mRNA_S-firma_M_contig9266.20210.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=840bp|location=Sequence derived from alignment at S-firma_M_contig9266:1630..2942- (Sphaerotrichia firma Sfir_13m male)
ATCGTCCACACACACAGAACACAGCCCCACTGTTACCATTCCCTGACTAT
ATCGCGTCAGCGTTCCACTTTATTTCTCTCTTTTTGCCTTCAACCACCAC
AATCCCCTACTCACAGCCTTCTCCATCCCGAGTCAGGAGCGAACAGCATG
CGAGCCAACACGTATCCCACCGTTTCGCTGCCGATTAACTCGACGAACAC
AGCCCGCCCGCACCCGTACCACCGCTCAAGACGACCGCCGACCCGCCTCT
GGCCCTTCTCCTGGACTCCACCAAGCCCTCCCTCGTTTCTGCGAGGAGGA
ACCCCTCGTGGTCCCTGGTCAACCCTCAAAAAGCCTACAGACCATTCAAG
ACACCAGCCCTCCAGGATCAAGCGGCGAGCTGCTCTCCTCGAACGGCGAC
ATCTTCTCTCCGCGTGGTGAATCGTCCACACACACAGAACACAGCCCCAC
TGTTACCATTCCCTGACTATATCGCGTCAGCGTTCCACTTTATTTCTCTC
TTTTTGCCTTCAACCACCACAATCCCCTACTCACAGCCTTCTCCATCCCG
AGTCAGGAGCGAACAGCATGCGAGCCAACACGTATCCCACCGTTTCGCTG
CCGATTAACTCGACGAACACAGCCCGCCCGCACCCGTACCACCGCTCAAG
ACGACCGCCGACCCGCCTCTGGCCCTTCTCCTGGACTCCACCAAGCCCTC
CCTCGTTTCTGCGAGGAGGAACCCCTCGTGGTCCCTGGTCAACCCTCAAA
AAGCCTACAGACCATTCAAGACACCAGCCCTCCAGGATCAAGCGGCGAGC
TGCTCTCCTCGAACGGCGACATCTTCTCTCCGCGTGGTGA
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