mRNA_S-firma_M_contig9256.20200.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9256.20200.1
Unique NamemRNA_S-firma_M_contig9256.20200.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9256.20200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9256contigS-firma_M_contig9256:286..1513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size969
Cds size603
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9256.20200.1prot_S-firma_M_contig9256.20200.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9256 652..1513 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828752.7267456-UTR-S-firma_M_contig9256:285..6511622828752.7267456-UTR-S-firma_M_contig9256:285..651Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9256 286..651 +
1697105141.3647819-UTR-S-firma_M_contig9256:285..6511697105141.3647819-UTR-S-firma_M_contig9256:285..651Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9256 286..651 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828752.743919-CDS-S-firma_M_contig9256:651..10851622828752.743919-CDS-S-firma_M_contig9256:651..1085Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9256 652..1085 +
1697105141.3729563-CDS-S-firma_M_contig9256:651..10851697105141.3729563-CDS-S-firma_M_contig9256:651..1085Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9256 652..1085 +
1622828752.762221-CDS-S-firma_M_contig9256:1344..15131622828752.762221-CDS-S-firma_M_contig9256:1344..1513Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9256 1345..1513 +
1697105141.381199-CDS-S-firma_M_contig9256:1344..15131697105141.381199-CDS-S-firma_M_contig9256:1344..1513Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9256 1345..1513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9256.20200.1

>prot_S-firma_M_contig9256.20200.1 ID=prot_S-firma_M_contig9256.20200.1|Name=mRNA_S-firma_M_contig9256.20200.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=201bp
MFAPVKNKPDEEKREFFAVLAVGRVVTEEGREVGRSVDDNFLVCATPSNN
LIPANGGLDRDSVAAAENAAAEAVPGGLDGAQGRRRAVEGEEKGDGREGG
GGGTGGYGANGCLLYDHLSDTNTPATGCPTCSSEGWLRLGPYQERRGMTS
TWGRETPPPPPPPGALRDIKALRWPAVGWPSSTGARTASKPTAAGSTAAG
G
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mRNA from alignment at S-firma_M_contig9256:286..1513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9256.20200.1 ID=mRNA_S-firma_M_contig9256.20200.1|Name=mRNA_S-firma_M_contig9256.20200.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1228bp|location=Sequence derived from alignment at S-firma_M_contig9256:286..1513+ (Sphaerotrichia firma Sfir_13m male)
GAGTTATTTGGACGCCCTCCCCGCAGCAGCTAGAGTTCGGGTATTCGTTC
AACCAGCCGATCACCGAAGTTGTGTGTCCGGCTTCCTGGTGGCAGCTATC
GTTTGGGACATACTTCAACCAGCCCTGGCGGAGTTTCCTGGCCGTCGTCC
CTGACGCAGCTACTGTAAATAAAGTTCGGGAATTCCTCCGACCAGCCGAT
CGCCGGAGTCGCTTGGCCGGCCTCCCTCCAGCAGCTGTCATTCGGACACG
ATTTCAAGCAGCCCATCGTTGGGGTCGAGCCTGTGCGAAGCGTGATCACC
GGACGCGTTGTCGCAAAATAGTTTAATCACACAGGATACGGAGTACTCCG
TATATTACGGAGCTATATGTTTGCGCCCGTCAAGAACAAGCCAGACGAAG
AGAAAAGGGAGTTTTTCGCTGTATTGGCTGTGGGGCGTGTTGTCACCGAA
GAAGGTAGAGAAGTTGGCCGTTCCGTAGATGACAACTTTCTCGTTTGCGC
GACTCCTTCCAATAATCTCATTCCAGCGAACGGTGGCTTGGATAGGGACA
GCGTTGCCGCCGCAGAAAACGCGGCGGCGGAGGCGGTCCCGGGGGGTTTG
GACGGCGCGCAAGGTCGAAGAAGAGCTGTAGAAGGAGAAGAGAAGGGAGA
TGGGCGCGAGGGTGGGGGCGGCGGTACGGGGGGCTACGGTGCCAACGGGT
GTCTGCTGTACGACCACTTGTCCGATACCAACACGCCAGCGACTGGGTGC
CCAACATGCAGTTCAGAGGGATGGCTTCGCCTCGGTCCATATCAGGAAAG
GTGCGGCAGGTTTCGCGCGAAAAGCTCGGTCGCCACGGCCTCGGAGAGGC
GGTGTGTCAAATAAGCCTAACGCGGGGTCGTATACACGCTTTTTTCCGTG
CGGTAGTTGCTGCCCTGGTTGTGGCGAGGCGAATGATTTTTCGCGCGCTT
TTGTGGCGTGTAAAACGTGCGCCTGCCTGCTTGCGTGCTCAGGGTCTCAA
CCCCCCCCTCCCCGCACCAACATGCGCTGCTGCTCGCGAATTCCTTCTCT
GCTTTCCAGGCGCGGGATGACCTCAACCTGGGGGCGAGAAACACCGCCGC
CGCCGCCGCCACCTGGGGCTCTTCGAGACATCAAGGCTCTGCGGTGGCCA
GCGGTGGGGTGGCCTTCCTCAACGGGAGCAAGGACGGCCTCGAAACCGAC
AGCGGCGGGATCGACGGCGGCGGGGGGT
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Coding sequence (CDS) from alignment at S-firma_M_contig9256:286..1513+

>mRNA_S-firma_M_contig9256.20200.1 ID=mRNA_S-firma_M_contig9256.20200.1|Name=mRNA_S-firma_M_contig9256.20200.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1206bp|location=Sequence derived from alignment at S-firma_M_contig9256:286..1513+ (Sphaerotrichia firma Sfir_13m male)
ATGTTTGCGCCCGTCAAGAACAAGCCAGACGAAGAGAAAAGGGAGTTTTT
CGCTGTATTGGCTGTGGGGCGTGTTGTCACCGAAGAAGGTAGAGAAGTTG
GCCGTTCCGTAGATGACAACTTTCTCGTTTGCGCGACTCCTTCCAATAAT
CTCATTCCAGCGAACGGTGGCTTGGATAGGGACAGCGTTGCCGCCGCAGA
AAACGCGGCGGCGGAGGCGGTCCCGGGGGGTTTGGACGGCGCGCAAGGTC
GAAGAAGAGCTGTAGAAGGAGAAGAGAAGGGAGATGGGCGCGAGGGTGGG
GGCGGCGGTACGGGGGGCTACGGTGCCAACGGGTGTCTGCTGTACGACCA
CTTGTCCGATACCAACACGCCAGCGACTGGGTGCCCAACATGCAGTTCAG
AGGGATGGCTTCGCCTCGGTCCATATCAGGAAAGATGTTTGCGCCCGTCA
AGAACAAGCCAGACGAAGAGAAAAGGGAGTTTTTCGCTGTATTGGCTGTG
GGGCGTGTTGTCACCGAAGAAGGTAGAGAAGTTGGCCGTTCCGTAGATGA
CAACTTTCTCGTTTGCGCGACTCCTTCCAATAATCTCATTCCAGCGAACG
GTGGCTTGGATAGGGACAGCGTTGCCGCCGCAGAAAACGCGGCGGCGGAG
GCGGTCCCGGGGGGTTTGGACGGCGCGCAAGGTCGAAGAAGAGCTGTAGA
AGGAGAAGAGAAGGGAGATGGGCGCGAGGGTGGGGGCGGCGGTACGGGGG
GCTACGGTGCCAACGGGTGTCTGCTGTACGACCACTTGTCCGATACCAAC
ACGCCAGCGACTGGGTGCCCAACATGCAGTTCAGAGGGATGGCTTCGCCT
CGGTCCATATCAGGAAAGGCGCGGGATGACCTCAACCTGGGGGCGAGAAA
CACCGCCGCCGCCGCCGCCACCTGGGGCTCTTCGAGACATCAAGGCTCTG
CGGTGGCCAGCGGTGGGGTGGCCTTCCTCAACGGGAGCAAGGACGGCCTC
GAAACCGACAGCGGCGGGATCGACGGCGGCGGGGGGTGCGCGGGATGACC
TCAACCTGGGGGCGAGAAACACCGCCGCCGCCGCCGCCACCTGGGGCTCT
TCGAGACATCAAGGCTCTGCGGTGGCCAGCGGTGGGGTGGCCTTCCTCAA
CGGGAGCAAGGACGGCCTCGAAACCGACAGCGGCGGGATCGACGGCGGCG
GGGGGT
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