mRNA_S-firma_M_contig925.20196.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig925.20196.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI) HSP 1 Score: 491 bits (1264), Expect = 4.980e-164 Identity = 250/324 (77.16%), Postives = 275/324 (84.88%), Query Frame = 2
Query: 314 LLLSAFHHLLLGASAVTYDVSASGGGLDLSEGMALAQPGDTVSLADGTYDAAVVSHRDGKKGSPITVVGGPGAIIKGDYSSRSVLINHSFITLKGFSVEGKIGSSNSMEA-YVNKCVYVEGTGDSSSP-LDGFVMEGLNIENCGGECVRLKDSVVNAVITGNDIKNCGIHDYQFNTGDKNGEGVYIGTSSTQWINGPDDCTNNLVKGNRISTSGNECVDIKEGATGNVIEDNVCSNQLDVNSGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWKVGGHQYGVGNSVYGNDFSSVGNGALKVLVAKQGDICGNTCEDGSCTLRGEN 1279
LLL L A AVTYD SA G G DL E M LAQ GDTV+L DGTYD+A+VS RDG+ GSPITV GGPGAIIKG YSSRSVLI HSFITLKGF+VEGKIG+S++ EA +VNKCVYVEG G SS LDGFVME + ++NCGGECVRLKDSV+NA + GN I NCG+HDY FN+GDKNGEGVYIGTSSTQW NG D C +NLV GNRISTSGNECVDIKEGA+GNVIEDN+CS QLD SGCYDSRGDGNTFRYNVGTDCMGAGVRLGGW+V GHQYGVGNSVYGNDF++VG GALKVLV +QGDICGNTCEDGSC+L GE+
Sbjct: 25 LLLXXXXILSPSARAVTYDASADGDGFDLYEAMDLAQAGDTVNLQDGTYDSALVSVRDGEFGSPITVSGGPGAIIKGSYSSRSVLITHSFITLKGFTVEGKIGTSDTDEASWVNKCVYVEGPGSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVINAQVMGNTISNCGVHDYMFNSGDKNGEGVYIGTSSTQWTNGEDTCNDNLVSGNRISTSGNECVDIKEGASGNVIEDNICSEQLDAESGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWEVDGHQYGVGNSVYGNDFNAVGEGALKVLVGEQGDICGNTCEDGSCSLVGED 348
BLAST of mRNA_S-firma_M_contig925.20196.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI) HSP 1 Score: 462 bits (1190), Expect = 2.330e-155 Identity = 238/326 (73.01%), Postives = 272/326 (83.44%), Query Frame = 2
Query: 314 LLLSAFHHLLLGASAVTYDVSASGGGLDLSEGMALAQPGDTVSLADGTYDAAVVSHRDGKKGSPITVVGGPGAIIKGDYSSRSVLINHSFITLKGFSVEGKIGSSNSMEA-YVNKCVYVEGTG-DSSSPLDGFVMEGLNIENCGGECVRLKDSVVNAVITGNDIKNCGIHDYQFNTGDKNGEGVYIGTSSTQWINGPDDCTNNLVKGNRISTSGNECVDIKEGATGNVIEDNVCSNQLDVNSGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWKVGGHQYGVGNSVYGNDFSSVGNGALKVLVAKQGDICGNTCEDGSCTLRGENLS 1285
LLL L A AVTY+VSA G G+DL E M LA+ GDTV+L +GTYD+A+VS RDG+ GSPITV GGPGAIIKG SSRSV I HSFITLKGFSVEGKIGS+++ +A +VNKCVYVEG G +SS+ LDGFVME + ++NCGGECVRLKDSVVNA +TGN I NCG+HDY FN+ DKNGEGVYIGTSSTQW NG D C N+V N ISTSGNECVDIKEG++GNVIEDN CS+QLD SGCYDSRGDGNTFRYNVG++C GAGVRLGGW+V GHQYGV NSVYGNDF +VG GALKVLV +QGDICGNTCE+GSC+L G++ S
Sbjct: 25 LLLXXXXVLSPSAFAVTYNVSADGDGIDLYEAMDLAEAGDTVNLQNGTYDSALVSIRDGEFGSPITVAGGPGAIIKGSSSSRSVFITHSFITLKGFSVEGKIGSNDTDQASWVNKCVYVEGPGANSSAVLDGFVMEDMVVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDYMFNSEDKNGEGVYIGTSSTQWTNGEDTCNGNVVSRNLISTSGNECVDIKEGSSGNVIEDNFCSDQLDAESGCYDSRGDGNTFRYNVGSECTGAGVRLGGWEVDGHQYGVNNSVYGNDFYAVGVGALKVLVGEQGDICGNTCEEGSCSLTGDDES 350
BLAST of mRNA_S-firma_M_contig925.20196.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI) HSP 1 Score: 404 bits (1037), Expect = 4.400e-130 Identity = 206/322 (63.98%), Postives = 247/322 (76.71%), Query Frame = 2
Query: 359 VTYDVSASGGGLDLSEGMALAQPGDTVSLADGTYDAAVVSHRDGKKGSPITVVGGPGAIIKGDYS-SRSVLINHSFITLKGFSVEGKIGSSNSMEAYVNKCVYVEGTG-DSSSPLDGFVMEGLNIENCGGECVRLKDSVVNAVITGNDIKNCGIHDYQFNTGDKNGEGVYIGTSSTQWINGPDD-CTNNLVKGNRISTSGNECVDIKEGATGNVIEDNVCSNQLDVNSGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWKVGGHQYGVGNSVYGNDFSSVGNGALKVLVAKQGDICGNTCEDGSCTLRGENLSGVTETWNQAC 1315
+TYDV+ G G L+E M LA+ GDTVSL DGTY+ A+ + RDG+ G+PITVVGGPGAIIK S SRSV + HSFI LKGF+VEG+IG+ + ++YV C+YV+G G DSS+ LDGFVME + ++NCGGECVRLKD V NA I N I NCGIHDY F +GD NG+GV IGTSS +W +G +D CTNNLV GN I TS NECVD+KEGA GNVIEDN+C NQLD+NSGCY+SRG+ N FR N G+DC+GAGVRLGGW+V G QYGVGNSVY NDF+ VG GALK++V QG ICGNTC C L G+ L +TW+ AC
Sbjct: 1 MTYDVTVDGDGFGLAEAMDLAEAGDTVSLQDGTYEQALETVRDGESGNPITVVGGPGAIIKAQNSASRSVFVGHSFIELKGFTVEGQIGTEVTEDSYVLNCIYVQGPGSDSSTFLDGFVMEEMAVQNCGGECVRLKDGVTNAKIFSNTITNCGIHDYMFESGDMNGQGVCIGTSSDEWPDGEEDVCTNNLVAGNVIDTSANECVDVKEGAYGNVIEDNMCYNQLDINSGCYNSRGNDNIFRNNAGSDCLGAGVRLGGWEVDGFQYGVGNSVYDNDFNDVGFGALKIMVDGQGTICGNTCAGDDCQLIGDYLDDTIDTWDHAC 322
BLAST of mRNA_S-firma_M_contig925.20196.1 vs. uniprot
Match: A0A6H5LEX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEX7_9PHAE) HSP 1 Score: 360 bits (925), Expect = 1.850e-114 Identity = 188/260 (72.31%), Postives = 214/260 (82.31%), Query Frame = 2
Query: 299 RASFVLLLSAFHHLLLGASAVTYDVSASGGGLDLSEGMALAQPGDTVSLADGTYDAAVVSHRDGKKGSPITVVGGPGAIIKGDYSSRSVLINHSFITLKGFSVEGKIGSSNSMEA-YVNKCVYVEGTGDSSSP-LDGFVMEGLNIENCGGECVRLKDSVVNAVITGNDIKNCGIHDYQFNTGDKNGEGVYIGTSSTQWINGPDDCTNNLVKGNRISTSGNECVDIKEGATGNVIEDNVCSNQLDVNSGCYDSRGDGNTFR 1072
R + +LLL H A AVT+D SA G G DL E M LAQ GDTV+L DGTYD+A+VS R G+ GSPITV GGPGAIIKG YSSRSVLI HSFITLKGF+VEGK+G+S++ EA +VNKCVYVEG G SS LDGFVME + ++NCGGECVRLKDSVVNA +TGN I NCG+HD+ FN+GDKNGEGVYIGTSSTQW NG D C +NLV GNRISTSGNECVDIKEGA+GNV+E+N+CS+QLD SGCYDSRGDGNTFR
Sbjct: 22 RNALLLLLLLLHSP--SARAVTFDASADGDGFDLYEAMDLAQAGDTVNLQDGTYDSALVSVRGGEFGSPITVSGGPGAIIKGSYSSRSVLITHSFITLKGFTVEGKVGTSDTDEASWVNKCVYVEGPGSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDFMFNSGDKNGEGVYIGTSSTQWTNGEDTCNDNLVFGNRISTSGNECVDIKEGASGNVVENNICSDQLDAESGCYDSRGDGNTFR 279
BLAST of mRNA_S-firma_M_contig925.20196.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE) HSP 1 Score: 327 bits (839), Expect = 2.050e-103 Identity = 157/317 (49.53%), Postives = 220/317 (69.40%), Query Frame = 2
Query: 311 VLLLSAFHHLLLGASAVTYDVSASGGGLDLSEGMALAQPGDTVSLADGTYDAAVVSHRDGKKGSPITVVGGPGAIIKGDYSSRSVLINHSFITLKGFSVEGKIGSSNSMEAYVNKCVYVEGTGDSSSP-LDGFVMEGLNIENCGGECVRLKDSVVNAVITGNDIKNCGIHDYQFNTGDKNGEGVYIGTSSTQWINGPDDCTNNLVKGNRISTSGNECVDIKEGATGNVIEDNVCSNQLDVNSGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWKVGGHQYGVGNSVYGNDFSSVGNGALKVLVAKQGDICGNTCEDGS 1258
+LLL L A A T+D S G ++ +A A GDTV LADGTY+ A+V+ + G+ G+P+ + GG A++ + V + HS++TL+GFSV+GKI + E+YV+KCV+VEGT S L+GFVM+ + ++NCG ECVRLK +V AVI+ N I++CG+ D+ + KNGEG+Y+GTSSTQW +GPD+C +N + GN I+ +GNECVDIKEG+TG ++E+N CS QLD +SGC+ SRGDGN FRYN +DC+G GVR+GGW+V GH+YG NS+Y N F+ +G L QG +CGN+C+ G+
Sbjct: 1 MLLLITIRQL---ADARTFDASPDGVPYSIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRDALVNAGDDGKVVYVQHSWVTLEGFSVDGKISDDDEAESYVDKCVFVEGTSTSGDERLEGFVMQDVYVQNCGDECVRLKSFIVGAVISDNVIQDCGVRDFVYGNSGKNGEGIYVGTSSTQWSDGPDECNDNTITGNTITPNGNECVDIKEGSTGTIVEENTCSGQLDEDSGCFGSRGDGNVFRYNTASDCLGVGVRIGGWEVDGHKYGQDNSIYENSFTRAESGGLSFFALPQGKVCGNSCQGGA 314
BLAST of mRNA_S-firma_M_contig925.20196.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE) HSP 1 Score: 305 bits (782), Expect = 2.590e-92 Identity = 168/373 (45.04%), Postives = 227/373 (60.86%), Query Frame = 2
Query: 281 AGCDNKRASFVLL---LSAFHHLLLGASAVTYDVSASGGGLDLSEGMALAQPGDTVSLADGTYDAAVVSHRDGKKGSPITVVGGPGAIIK---GD----YSSRSVLINHSFITLKGFSVEGKIGSSNSMEAYVNKCVYVEGTG----------DSSSPLDGFVMEGLNIENCGGECVRLKDSVVNAVITGNDIKNCGIHDYQFNTGDKNGEGVYIGTSSTQW--------INGPDDCTNNLVKGNRISTSGNECVDIKEGATGNVIEDNVCSNQLDVNSGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWKVGGHQYGVGNSVYGNDFSSVGNGALKVLVAKQGDICGNTCEDGSCTLRGENLSGVTETWNQAC 1315
+ C NK A L +A L G +A Y+VS G + L+ + +A GD VSLADGTY +V+ G +G+P+ + GG GAII GD +S + V I HS++TL+GF+++G++ + E+YV+KC++VEG + S L G V++GL I+NCG EC+R+++ V NAVI NDI+NCGI+D++F K GE +YIGTSS QW NGPD NLV GN++ GNECVDIKEGAT NV+E N C +Q D SGCYDSRG+ NTFRYN C+GAG+RLGG + G YGV N VYGN+F G++K V QG IC N+C +G C + E + +W+Q C
Sbjct: 4 SSCTNKTAGVAALRLATAALAALATGTNAAMYEVSPDGNPMTLTAALEVAGAGDIVSLADGTYREPIVTMNAGVEGNPLVITGGRGAIINYFSGDRSLMWSQKVVDIRHSYVTLEGFTIDGQLDDEDVEESYVDKCIFVEGQAAPTMLTHQGQEVESALIGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRYNTAVQCLGAGIRLGGHTIDGFVYGVDNHVYGNEFLETEAGSIKSRVEPQGVICDNSCANGECGVSEEGDEEIEGSWDQGC 376
BLAST of mRNA_S-firma_M_contig925.20196.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI) HSP 1 Score: 289 bits (739), Expect = 4.290e-84 Identity = 153/346 (44.22%), Postives = 220/346 (63.58%), Query Frame = 2
Query: 356 AVTYDVSASGGGLDLSEGMALAQPGDTVSLADGTYDAAVVSHRDGKKGSPITVVGGPGAIIK---GD----YSSRSVLINHSFITLKGFSVEGKIGSSNSMEAYVNKCVYVEGTGDSS----------SPLDGFVMEGLNIENCGGECVRLKDSVVNAVITGNDIKNCGIHDYQFNTGDKNGEGVYIGTSSTQWI--------NGPDDCTNNLVKGNRISTSGNECVDIKEGATGNVIEDNVCSNQLDVNSGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWKVGGHQYGVGNSVYGNDFSSVGNGALKVLVAKQGDICGNTCEDGSCTLRGE-NLSGVTETWNQAC 1315
A TY+VS G + L+ + +A GDT+SL DG Y +V+ + G +G+P+ + GG A++ GD +S + V I HS++TL+GF+++G+I ++ +++V+KC++VEG + L G V++ + I+NCG EC+R+++ V N VI NDI++CGI+DY++ K GE +YIGTSS QW NGPD C NLV GN++ GNECVDIKEGAT NV+E N C +Q DV SGCYDSRG+ NTFRYN +C+G G+RLGG ++ G YGV N VYGN F G+G++K QG IC N+CEDG C + E + + ++W+Q C
Sbjct: 78 AATYEVSPDGDPMTLAAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLRGFTIDGQIDDADHEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNTVIIDNDIEDCGIYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRYNTAENCLGGGIRLGGHEIDGITYGVDNHVYGNSFRETGDGSIKARRDPQGVICENSCEDGDCDVSEEGDDEEIEDSWDQEC 423
BLAST of mRNA_S-firma_M_contig925.20196.1 vs. uniprot
Match: UPI00036AEC55 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036AEC55) HSP 1 Score: 242 bits (617), Expect = 5.440e-70 Identity = 135/287 (47.04%), Postives = 177/287 (61.67%), Query Frame = 2
Query: 410 MALAQPGDTVSLADGTYDAAVVSHRDGKKGSPITVVGGPGAIIKGDYSSRSVLINHSFITLKGFSVEGKIGSSNSMEAYVNKCVYVEGTGDSSSPLDGFVMEGLNIENCGGECVRLKDSVVNAVITGNDIKNCGIHDYQFNTGDKNGEGVYIGTSSTQW------INGPDDCTNNLVKGNRISTSGNECVDIKEGATGNVIEDNVCSNQLDVNSGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWKVGGHQYGVGNSVYGNDFSSVGNGALKVLVAKQGDICGNTCED 1252
++LAQ GD V L G Y V S R G+ PI + G A++ G R + INHS+I L+ F+++G++GS N+ME + + VYV+G P GFVM ++++N GGECVRL+ V A I N NCG++D++FN G KNGE +Y+GTSS QW GPD +N + N+ T+GNECVDIKEGA N++E N+CS Q D NS +DSRGD N FRYNV D GAGVRLGG V G QYGV N VYGN + +K++ A Q +CGN D
Sbjct: 63 LSLAQAGDRVYLQPGHYYENVRSVRHGQADMPIIIHGSKSAVLHGA-QGRILEINHSYIHLRNFTIDGQVGSGNTMEDFRDILVYVKGNEPQQGPT-GFVMRAMSLKNAGGECVRLRYYVTEAEIFDNTFYNCGVYDFKFNNGGKNGEAIYVGTSSNQWDDGKNPTGGPDPSNHNWIHHNKFLTNGNECVDIKEGAEYNLVEYNICSGQQDPNSAGFDSRGDHNIFRYNVSHDNKGAGVRLGGNTVDGRQYGVNNQVYGNLLYNNAQAGVKLMAAPQEKVCGNPTSD 347
BLAST of mRNA_S-firma_M_contig925.20196.1 vs. uniprot
Match: A0A1Y0IFB0_9GAMM (Secreted protein n=2 Tax=Oleiphilus messinensis TaxID=141451 RepID=A0A1Y0IFB0_9GAMM) HSP 1 Score: 239 bits (611), Expect = 1.040e-68 Identity = 135/291 (46.39%), Postives = 177/291 (60.82%), Query Frame = 2
Query: 398 LSEGMALAQPGDTVSLADGTYDAAVVSHRDGKKGSPITVVGGPGAIIKGDYSSRSVLINHSFITLKGFSVEGKIGSSNSMEAYVNKCVYVEGTGDSSSPLDGFVMEGLNIENCGGECVRLKDSVVNAVITGNDIKNCGIHDYQFNTGDKNGEGVYIGTSSTQWING------PDDCTNNLVKGNRISTSGNECVDIKEGATGNVIEDNVCSNQLDVNSGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWKVGGHQYGVGNSVYGNDFSSVGNGALKVLVAKQGDICGNTCED 1252
++ ++ A+PG+ V L G Y + + R G PI + G AI+KG +R I HS+I L+ FS++GK+G+ N++E + + V+V+G S P G V+ + ++N GGECVRLK V A I GN I+NCG++D+QF G KNGEG+YIGT+ QW NG PD N V GN+ T GNECVDIKEGA N+IE N C NQLD NSG +D+RGD N FRYN+ GAGVRLGG G QYG+ N VYGN G+ +KV+ Q IC N D
Sbjct: 80 INTALSYAEPGERVYLMPGEYFEDIKTVRSGTPDQPILIYGSKKAIVKGAQKNRIFQIFHSYIHLRNFSIDGKVGAGNAIEDFRDILVWVQGQEIKSGP-KGVVLRSMILQNAGGECVRLKYFVTQAEIFGNLIRNCGVYDFQFAAGGKNGEGIYIGTAPEQWDNGKNPSADPDHSNGNWVWGNKFYTYGNECVDIKEGAEYNLIEYNACQNQLDPNSGGFDARGDNNIFRYNIAHTNTGAGVRLGGDLHQGRQYGINNQVYGNIIYGNGHAGVKVMSYPQDQICSNMLFD 369
BLAST of mRNA_S-firma_M_contig925.20196.1 vs. uniprot
Match: A0A261GHV7_9GAMM (DUF1565 domain-containing protein n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GHV7_9GAMM) HSP 1 Score: 237 bits (604), Expect = 5.630e-68 Identity = 130/286 (45.45%), Postives = 169/286 (59.09%), Query Frame = 2
Query: 419 AQPGDTVSLADGTYDAAVVSHRDGKKGSPITVVGGPGAIIKGDYSSRSVLINHSFITLKGFSVEGKIGSSNSMEAYVNKCVYVEGTGDSSSPLDGFVMEGLNIENCGGECVRLKDSVVNAVITGNDIKNCGIHDYQFNTGDKNGEGVYIGTSSTQWING------PDDCTNNLVKGNRISTSGNECVDIKEGATGNVIEDNVCSNQLDVNSGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWKVGGHQYGVGNSVYGNDFSSVGNGALKVLVAKQGDICGNTCEDGS 1258
AQPGD V L +G Y V + R G + PI + G A++KG+ R + INH +I L+ F+++G +G N E Y ++V+GT P +GFVM + I N GGECVRL+ V A I GN NCG +D+QF+ KNGE +YIGTSS QW +G PD N V N T GNECVDIKEGA N++E+N+C+ Q D SG +D+RGD N RYNV GAG+R+GG V G QYGV N VYGN N +K++ Q +CGN+ D S
Sbjct: 71 AQPGDRVYLLEGKYYQDVKTVRSGLRSKPILIQGTKSAVLKGENGGRVLQINHDYIHLRNFTIDGLVGKGNGPEDYRKSLIFVQGTEHKQGP-EGFVMRSMRIRNAGGECVRLRYHVTRAEIFGNTFYNCGAYDFQFDGRGKNGEAIYIGTSSEQWDDGKNPSADPDHSNYNWVHHNYFLTRGNECVDIKEGAAHNLVENNICAGQQDPASGGFDARGDYNIIRYNVSYSNKGAGIRVGGNMVNGRQYGVFNEVYGNKIFDNDNSGIKIMTYPQRYVCGNSMTDNS 355 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig925.20196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig925.20196.1 >prot_S-firma_M_contig925.20196.1 ID=prot_S-firma_M_contig925.20196.1|Name=mRNA_S-firma_M_contig925.20196.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=572bp MAGCDNKRASFVLLLSAFHHLLLGASAVTYDVSASGGGLDLSEGMALAQPback to top mRNA from alignment at S-firma_M_contig925:12946..18343- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig925.20196.1 ID=mRNA_S-firma_M_contig925.20196.1|Name=mRNA_S-firma_M_contig925.20196.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=5398bp|location=Sequence derived from alignment at S-firma_M_contig925:12946..18343- (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig925:12946..18343- >mRNA_S-firma_M_contig925.20196.1 ID=mRNA_S-firma_M_contig925.20196.1|Name=mRNA_S-firma_M_contig925.20196.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=3432bp|location=Sequence derived from alignment at S-firma_M_contig925:12946..18343- (Sphaerotrichia firma Sfir_13m male)back to top |