mRNA_S-firma_M_contig9241.20189.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9241.20189.1
Unique NamemRNA_S-firma_M_contig9241.20189.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9241.20189.1 vs. uniprot
Match: A0A6H5KCP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP6_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.000e-34
Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:  499 VRRARKEVSVRQRFYSGDDGQPFPAGPSAVVLVSHGDALQVLQCALAGRPVEQHRSLPHLKNCGIRVLRP 708
            +RR RKE+S+RQR+YSG DGQPFP GPSAVVLVSHGDALQ+LQCALAGRP EQHRSLPHL+NCGIRVLRP
Sbjct:    1 MRRLRKEISIRQRYYSGADGQPFPPGPSAVVLVSHGDALQLLQCALAGRPAEQHRSLPHLENCGIRVLRP 70
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BLAST of mRNA_S-firma_M_contig9241.20189.1 vs. uniprot
Match: UPI00166A5D18 (histidine phosphatase family protein n=1 Tax=Halomonas lutescens TaxID=1602943 RepID=UPI00166A5D18)

HSP 1 Score: 81.3 bits (199), Expect = 4.150e-15
Identity = 52/117 (44.44%), Postives = 67/117 (57.26%), Query Frame = 1 
Query:  352 LRERFFGDFDGQEDAPSYAKVWALDSLSARHGELGVEPAAEVAARAAAVVRRARKEVSVRQRFYSGDDGQPFPAGPSAVVLVSHGDALQVLQCALAGRPVEQHRSLPHLKNCGIRVL 702
            LRER FG+ DGQ D   Y  VWA D+ SA H +  VEP + VAAR  AV+       ++ QRF +G+           V++VSHGD LQ+L  ALAGRP+ QHR  P L    I ++
Sbjct:   97 LRERHFGELDGQADH-HYPDVWAFDAQSAEHAQWQVEPVSRVAARMCAVLE------ALEQRF-TGE----------TVLVVSHGDPLQILLAALAGRPLTQHREQPALLPASITLV 195
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BLAST of mRNA_S-firma_M_contig9241.20189.1 vs. uniprot
Match: UPI00140C2320 (histidine phosphatase family protein n=1 Tax=Pseudomaricurvus alcaniphilus TaxID=1166482 RepID=UPI00140C2320)

HSP 1 Score: 80.9 bits (198), Expect = 5.890e-15
Identity = 49/119 (41.18%), Postives = 68/119 (57.14%), Query Frame = 1 
Query:  352 LRERFFGDFDGQEDAPSYAKVWALDSLSARHGELGVEPAAEVAARAAAVVRRARKEVSVRQRFYSGDDGQPFPAGPSAVVLVSHGDALQVLQCALAGRPVEQHRSLPHLKNCGIRVLRP 708
            LRER FG+ DG  D+ +YA+VWALD+ +A H   GVE   +V  RA  ++ +  ++ S          GQ        ++LV+HGD LQ+LQ   AG+P  +HRSLPHL    +R L P
Sbjct:   97 LRERDFGELDGAADS-NYARVWALDADNADHKTFGVESVNQVRQRALQLLAQIEQQCS----------GQ-------TIILVAHGDLLQILQTWFAGQPAARHRSLPHLGTAELRPLNP 197
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BLAST of mRNA_S-firma_M_contig9241.20189.1 vs. uniprot
Match: A0A3N9U141_9GAMM (Histidine phosphatase family protein n=7 Tax=Halomonas TaxID=2745 RepID=A0A3N9U141_9GAMM)

HSP 1 Score: 79.7 bits (195), Expect = 1.110e-14
Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 1 
Query:  352 LRERFFGDFDGQEDAPSYAKVWALDSLSARHGELGVEPAAEVAARAAAVVRRARKEVSVRQRFYSGDDGQPFPAGPSAVVLVSHGDALQVLQCALAGRPVEQHRSLPHLKNCGIRVL 702
            LRERFFGD+D   D P+YA VWA+DS +A H   GVE   +V+ R   ++      +S+ QRF   DD        + ++LV HGD LQ+L  A +G P+ +HRS P L    +R L
Sbjct:   79 LRERFFGDYDQGPD-PAYADVWAMDSENAEHRTHGVESVGDVSRRLIDLI------ISLEQRF---DD--------ATILLVGHGDPLQILLTAASGSPLSEHRSQPPLAPADVRPL 177
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BLAST of mRNA_S-firma_M_contig9241.20189.1 vs. uniprot
Match: G4F2P4_9GAMM (Uncharacterized protein n=5 Tax=Halomonas TaxID=2745 RepID=G4F2P4_9GAMM)

HSP 1 Score: 79.3 bits (194), Expect = 1.480e-14
Identity = 48/104 (46.15%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:  352 LRERFFGDFDGQEDAPSYAKVWALDSLSARHGELGVEPAAEVAARAAAVVRRARKEVSVRQRFYSGDDGQPFPAGPSAVVLVSHGDALQVLQCALAGRPVEQHR 663
            LRER+FG+FDGQ DA  Y  VWALDSL+A H    VE  + VAAR +AV+    ++       Y+G+           ++LVSHGD LQ+L  ALA +P+ QHR
Sbjct:   79 LRERYFGEFDGQTDA-HYPDVWALDSLNADHAHHQVEAVSSVAARMSAVMEGLEQQ-------YTGE----------IILLVSHGDPLQILLTALANKPLTQHR 164
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BLAST of mRNA_S-firma_M_contig9241.20189.1 vs. uniprot
Match: A0A6H1YB28_9GAMM (Histidine phosphatase family protein n=2 Tax=Halomonadaceae TaxID=28256 RepID=A0A6H1YB28_9GAMM)

HSP 1 Score: 79.3 bits (194), Expect = 2.160e-14
Identity = 49/117 (41.88%), Postives = 66/117 (56.41%), Query Frame = 1 
Query:  352 LRERFFGDFDGQEDAPSYAKVWALDSLSARHGELGVEPAAEVAARAAAVVRRARKEVSVRQRFYSGDDGQPFPAGPSAVVLVSHGDALQVLQCALAGRPVEQHRSLPHLKNCGIRVL 702
            LRER FG+ +GQ D+  Y  VWA D+ SA H +  VEP + VAAR  AV+       ++ QRF +             V++VSHGD LQ+L  ALAG+P+ QHR  P L    I ++
Sbjct:   97 LRERHFGELEGQADS-HYPDVWAFDAKSAEHTQWQVEPVSRVAARMCAVLE------ALEQRFTN-----------ETVLIVSHGDPLQILLTALAGKPLTQHREQPALLPASITLV 195
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BLAST of mRNA_S-firma_M_contig9241.20189.1 vs. uniprot
Match: A0A455UKX6_9GAMM (Uncharacterized protein n=3 Tax=Halomonas sulfidaeris TaxID=115553 RepID=A0A455UKX6_9GAMM)

HSP 1 Score: 79.3 bits (194), Expect = 2.200e-14
Identity = 47/109 (43.12%), Postives = 62/109 (56.88%), Query Frame = 1 
Query:  352 LRERFFGDFDGQEDAPSYAKVWALDSLSARHGELGVEPAAEVAARAAAVVRRARKEVSVRQRFYSGDDGQPFPAGPSAVVLVSHGDALQVLQCALAGRPVEQHRSLPHL 678
            LRER+FG+FDGQ D   Y  VWALDS  A HG   VE  + VAAR +AV+    ++          D+G+        +++VSHGD LQ+L  AL  +P+ QHR  P L
Sbjct:   97 LRERYFGEFDGQADE-HYPDVWALDSRDAEHGHYQVEAVSVVAARMSAVIEALEQQ----------DEGE-------TILVVSHGDPLQILLTALGNKPLTQHREQPAL 187
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BLAST of mRNA_S-firma_M_contig9241.20189.1 vs. uniprot
Match: A0A2A5GG34_9GAMM (Histidine phosphatase family protein n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A2A5GG34_9GAMM)

HSP 1 Score: 78.6 bits (192), Expect = 4.170e-14
Identity = 47/119 (39.50%), Postives = 62/119 (52.10%), Query Frame = 1 
Query:  346 RDLRERFFGDFDGQEDAPSYAKVWALDSLSARHGELGVEPAAEVAARAAAVVRRARKEVSVRQRFYSGDDGQPFPAGPSAVVLVSHGDALQVLQCALAGRPVEQHRSLPHLKNCGIRVL 702
            ++LRERFFGD +GQ D   Y  VW LD  +A H E  VE A +V  RA+A++++  K+ +                     +LV+HGD LQ+LQ      P  QHR LPHL    IR L
Sbjct:   95 KELRERFFGDLNGQSDQ-HYQDVWNLDQQNADHREYDVESANQVVVRASALIQQLEKQFT-----------------NEVFLLVAHGDVLQLLQTWFQNVPASQHRELPHLSTAEIRCL 195
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BLAST of mRNA_S-firma_M_contig9241.20189.1 vs. uniprot
Match: A0A368U0C1_9GAMM (Histidine phosphatase family protein n=3 Tax=Halomonas TaxID=2745 RepID=A0A368U0C1_9GAMM)

HSP 1 Score: 78.2 bits (191), Expect = 5.680e-14
Identity = 51/118 (43.22%), Postives = 63/118 (53.39%), Query Frame = 1 
Query:  352 LRERFFGDFDGQEDAPSYAKVWALDSLSARHGELGVEPAAEVAARAAAVVRRARKEVSVRQRFYSGDDGQPFPAGPSAVVLVSHGDALQVLQCALAGRPVEQHRSLPHLKNCGIRVLR 705
            LRER FGD +GQ D   Y +VWALD+ SA H E GVE  A VA R  AV+      +          DG+        V+LVSHGD LQ+L  AL GRP+ +HR    L    + VL+
Sbjct:   97 LRERHFGDLEGQAD-DRYPRVWALDARSAEHVEHGVESVASVARRMQAVIETLEHSL----------DGE-------TVLLVSHGDPLQILLTALEGRPLSRHRDREPLAPASLTVLQ 196
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BLAST of mRNA_S-firma_M_contig9241.20189.1 vs. uniprot
Match: UPI002023148D (histidine phosphatase family protein n=2 Tax=Halomonas sp. TRM85114 TaxID=2810616 RepID=UPI002023148D)

HSP 1 Score: 78.2 bits (191), Expect = 5.680e-14
Identity = 48/117 (41.03%), Postives = 63/117 (53.85%), Query Frame = 1 
Query:  352 LRERFFGDFDGQEDAPSYAKVWALDSLSARHGELGVEPAAEVAARAAAVVRRARKEVSVRQRFYSGDDGQPFPAGPSAVVLVSHGDALQVLQCALAGRPVEQHRSLPHLKNCGIRVL 702
            LRER FGD +  + A  Y +VWALD+    HG+ GVEP A VA R  AV+          +  +SG+           ++LVSHGD LQ+L  AL GRP+ QHR  P L    + +L
Sbjct:   97 LRERLFGDLEAGQ-ASRYEEVWALDARDPSHGQHGVEPVAAVAERMRAVIESL-------EASFSGE----------TILLVSHGDPLQILLTALEGRPLSQHRDRPALAPASVTLL 195
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9241.20189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCP6_9PHAE1.000e-3485.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00166A5D184.150e-1544.44histidine phosphatase family protein n=1 Tax=Halom... [more]
UPI00140C23205.890e-1541.18histidine phosphatase family protein n=1 Tax=Pseud... [more]
A0A3N9U141_9GAMM1.110e-1441.88Histidine phosphatase family protein n=7 Tax=Halom... [more]
G4F2P4_9GAMM1.480e-1446.15Uncharacterized protein n=5 Tax=Halomonas TaxID=27... [more]
A0A6H1YB28_9GAMM2.160e-1441.88Histidine phosphatase family protein n=2 Tax=Halom... [more]
A0A455UKX6_9GAMM2.200e-1443.12Uncharacterized protein n=3 Tax=Halomonas sulfidae... [more]
A0A2A5GG34_9GAMM4.170e-1439.50Histidine phosphatase family protein n=1 Tax=Porti... [more]
A0A368U0C1_9GAMM5.680e-1443.22Histidine phosphatase family protein n=3 Tax=Halom... [more]
UPI002023148D5.680e-1441.03histidine phosphatase family protein n=2 Tax=Halom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9241contigS-firma_M_contig9241:906..2172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score78.2
Seed ortholog evalue6.2e-12
Seed eggNOG ortholog396014.BF93_09360
KEGG rclassRC00536
KEGG koko:K15634,ko:K15640
KEGG ReactionR01518
KEGG Pathwayko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00002,M00003
EggNOG free text desc.Phosphoglycerate mutase family
EggNOG OGs2HHG4@201174,4FCV3@85020,COG0406@1,COG0406@2
EC5.4.2.12
COG Functional cat.G
Best tax levelDermabacteraceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size765
Cds size762
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828751.567822-CDS-S-firma_M_contig9241:905..13791622828751.567822-CDS-S-firma_M_contig9241:905..1379Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9241 906..1379 +
1697105140.6452491-CDS-S-firma_M_contig9241:905..13791697105140.6452491-CDS-S-firma_M_contig9241:905..1379Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9241 906..1379 +
1622828751.5798073-CDS-S-firma_M_contig9241:1882..21701622828751.5798073-CDS-S-firma_M_contig9241:1882..2170Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9241 1883..2170 +
1697105140.6561997-CDS-S-firma_M_contig9241:1882..21701697105140.6561997-CDS-S-firma_M_contig9241:1882..2170Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9241 1883..2170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9241.20189.1prot_S-firma_M_contig9241.20189.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9241 906..2170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9241.20189.1

>prot_S-firma_M_contig9241.20189.1 ID=prot_S-firma_M_contig9241.20189.1|Name=mRNA_S-firma_M_contig9241.20189.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=254bp
RKPQRFAQQQQQQQQCSRPSVSCGGTSSPTDAYPPEVAASMGEGRQLFVP
RYSQGVSIRQALLASSPPSPSLPSKVGVCLPSLSTVPPLPLSHAPPVLPI
APISLRVRPPPTFPPRDLRERFFGDFDGQEDAPSYAKVWALDSLSARHGE
LGVEPAAEVAARAAAVVRRARKEVSVRQRFYSGDDGQPFPAGPSAVVLVS
HGDALQVLQCALAGRPVEQHRSLPHLKNCGIRVLRPPPSTSTPPPPPPPT
EAAE
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mRNA from alignment at S-firma_M_contig9241:906..2172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9241.20189.1 ID=mRNA_S-firma_M_contig9241.20189.1|Name=mRNA_S-firma_M_contig9241.20189.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1267bp|location=Sequence derived from alignment at S-firma_M_contig9241:906..2172+ (Sphaerotrichia firma Sfir_13m male)
AGAAAGCCGCAACGTTTTGCGCAGCAGCAGCAGCAGCAGCAGCAGTGCTC
GAGACCCAGTGTTTCTTGCGGAGGGACATCGAGCCCGACGGACGCGTATC
CCCCAGAGGTTGCAGCCAGCATGGGTGAGGGGCGGCAGCTCTTCGTACCA
CGATACTCACAGGGAGTGAGTATCCGGCAAGCACTCCTTGCCTCCTCTCC
CCCCTCCCCCTCCTTGCCTTCGAAGGTTGGCGTTTGTCTCCCTTCGCTCT
CTACCGTGCCGCCTCTCCCCCTCTCTCACGCCCCGCCCGTTCTACCAATT
GCCCCGATTTCCCTGCGGGTCCGTCCTCCGCCGACATTCCCCCCCAGAGA
CCTCAGAGAGCGCTTCTTCGGGGACTTTGACGGGCAAGAGGACGCCCCGA
GCTACGCCAAGGTGTGGGCGCTCGACTCCCTCAGCGCCCGCCACGGCGAG
CTCGGAGTGGAACCCGCCGCAGAGGTAGGTGGGAATGGTGCGATTGGGCT
GCTTTTTGTTTTGTTTTGGGCTTTTTTTTTGCCCTCGTCAGCGCTCCGTG
TGTGTGTTTGTGTTGGTGACACGAGCGGGTCTGTGTGGAACCGTGGGGCC
GCCCGCTCTCCCGGGCTGAATGAATGGAGAATGCGCAGGCCGTCCGTCTC
ACCTTTCTCGGCAGGGCAGCGTGCTGAAAACAGGGAAAAGTATTGCACAC
CGTCGTGGAGTCAATTAAGGCGCGGATACTTTAGAAGGCCAACCAAACAT
CGCGCCCGGGGTTTTGTTCGCTTTTCGTGGCCGGGTTGTCCTCCTTGAGA
ACAAGGCAGGTGCACCTACCACACCACGACGGCACCGATACCGGCCCAAC
ATGCACCCGCAAACAGGTGCGGGTATATATATACCTCACCATCTCCAACG
CCCTCAGTCTCGTTGATTTTAACGTCGCACGCACATCGCTTTGTGATGCC
ACACACGCATGAAAACAAACCAACCAGGTGGCCGCCCGCGCGGCCGCCGT
CGTGCGCCGCGCCCGAAAGGAGGTCTCCGTCCGCCAGCGCTTCTACTCCG
GCGACGACGGGCAGCCGTTCCCCGCGGGCCCGAGCGCCGTCGTGCTCGTG
AGCCACGGCGACGCCCTGCAGGTGCTCCAGTGCGCGCTGGCCGGCCGCCC
CGTCGAGCAGCACCGCTCGCTGCCGCACCTGAAGAACTGCGGGATCAGGG
TCTTGCGGCCTCCGCCGTCGACGTCGACTCCGCCGCCGCCGCCGCCGCCG
ACTGAAGCAGCAGAGGC
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Coding sequence (CDS) from alignment at S-firma_M_contig9241:906..2172+

>mRNA_S-firma_M_contig9241.20189.1 ID=mRNA_S-firma_M_contig9241.20189.1|Name=mRNA_S-firma_M_contig9241.20189.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1524bp|location=Sequence derived from alignment at S-firma_M_contig9241:906..2172+ (Sphaerotrichia firma Sfir_13m male)
AGAAAGCCGCAACGTTTTGCGCAGCAGCAGCAGCAGCAGCAGCAGTGCTC
GAGACCCAGTGTTTCTTGCGGAGGGACATCGAGCCCGACGGACGCGTATC
CCCCAGAGGTTGCAGCCAGCATGGGTGAGGGGCGGCAGCTCTTCGTACCA
CGATACTCACAGGGAGTGAGTATCCGGCAAGCACTCCTTGCCTCCTCTCC
CCCCTCCCCCTCCTTGCCTTCGAAGGTTGGCGTTTGTCTCCCTTCGCTCT
CTACCGTGCCGCCTCTCCCCCTCTCTCACGCCCCGCCCGTTCTACCAATT
GCCCCGATTTCCCTGCGGGTCCGTCCTCCGCCGACATTCCCCCCCAGAGA
CCTCAGAGAGCGCTTCTTCGGGGACTTTGACGGGCAAGAGGACGCCCCGA
GCTACGCCAAGGTGTGGGCGCTCGACTCCCTCAGCGCCCGCCACGGCGAG
CTCGGAGTGGAACCCGCCGCAGAGAGAAAGCCGCAACGTTTTGCGCAGCA
GCAGCAGCAGCAGCAGCAGTGCTCGAGACCCAGTGTTTCTTGCGGAGGGA
CATCGAGCCCGACGGACGCGTATCCCCCAGAGGTTGCAGCCAGCATGGGT
GAGGGGCGGCAGCTCTTCGTACCACGATACTCACAGGGAGTGAGTATCCG
GCAAGCACTCCTTGCCTCCTCTCCCCCCTCCCCCTCCTTGCCTTCGAAGG
TTGGCGTTTGTCTCCCTTCGCTCTCTACCGTGCCGCCTCTCCCCCTCTCT
CACGCCCCGCCCGTTCTACCAATTGCCCCGATTTCCCTGCGGGTCCGTCC
TCCGCCGACATTCCCCCCCAGAGACCTCAGAGAGCGCTTCTTCGGGGACT
TTGACGGGCAAGAGGACGCCCCGAGCTACGCCAAGGTGTGGGCGCTCGAC
TCCCTCAGCGCCCGCCACGGCGAGCTCGGAGTGGAACCCGCCGCAGAGGT
GGCCGCCCGCGCGGCCGCCGTCGTGCGCCGCGCCCGAAAGGAGGTCTCCG
TCCGCCAGCGCTTCTACTCCGGCGACGACGGGCAGCCGTTCCCCGCGGGC
CCGAGCGCCGTCGTGCTCGTGAGCCACGGCGACGCCCTGCAGGTGCTCCA
GTGCGCGCTGGCCGGCCGCCCCGTCGAGCAGCACCGCTCGCTGCCGCACC
TGAAGAACTGCGGGATCAGGGTCTTGCGGCCTCCGCCGTCGACGTCGACT
CCGCCGCCGCCGCCGCCGCCGACTGAAGCAGCAGAGGTGGCCGCCCGCGC
GGCCGCCGTCGTGCGCCGCGCCCGAAAGGAGGTCTCCGTCCGCCAGCGCT
TCTACTCCGGCGACGACGGGCAGCCGTTCCCCGCGGGCCCGAGCGCCGTC
GTGCTCGTGAGCCACGGCGACGCCCTGCAGGTGCTCCAGTGCGCGCTGGC
CGGCCGCCCCGTCGAGCAGCACCGCTCGCTGCCGCACCTGAAGAACTGCG
GGATCAGGGTCTTGCGGCCTCCGCCGTCGACGTCGACTCCGCCGCCGCCG
CCGCCGCCGACTGAAGCAGCAGAG
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