mRNA_S-firma_M_contig924.20183.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig924.20183.1
Unique NamemRNA_S-firma_M_contig924.20183.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
[Close]
BLAST of mRNA_S-firma_M_contig924.20183.1 vs. uniprot
Match: A0A6H5JQS7_9PHAE (VHS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS7_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.110e-11
Identity = 110/205 (53.66%), Postives = 115/205 (56.10%), Query Frame = -3 
Query:   22 GMMPSSTTFASGS--TNRNRSFSEYSATSS--------------QGPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAASDPFAQ----VQRAPPPVAQAPTGPAPRVGSHYRGTPGSGSFDSGRGRTSTGASGDSAAAFGQALVVAGAVXXXXXXXXAATSGERIYNPFDEP 576
            GM+PSSTTFASGS  TNRNRSFSEYSATSS              Q P           XXXXXXXXXXXXXXXXXXXXXX                 XXXXXXXXXXX  A+DPFA     V R P   AQAP G APRV +   G  GSGSFD G  RT  G  GDS+AAFGQAL   G            T GE  YNPFD+P
Sbjct:  759 GMLPSSTTFASGSSGTNRNRSFSEYSATSSXXXXXXXXXXXXTLQQPFPSPAGQAALPXXXXXXXXXXXXXXXXXXXXXXQPQPQGQPLQGQAQQGSXXXXXXXXXXXXXAADPFAGGMGLVARDPFAQAQAPAGQAPRVNNQLGGAAGSGSFDPGTSRTLAG--GDSSAAFGQALFATG------------TGGESKYNPFDDP 949
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig924.20183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JQS7_9PHAE1.110e-1153.66VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig924contigS-firma_M_contig924:8924..9501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size579
Cds size507
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828751.1046734-CDS-S-firma_M_contig924:8923..94301622828751.1046734-CDS-S-firma_M_contig924:8923..9430Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig924 8924..9430 +
1697105140.3864484-CDS-S-firma_M_contig924:8923..94301697105140.3864484-CDS-S-firma_M_contig924:8923..9430Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig924 8924..9430 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828751.118113-UTR-S-firma_M_contig924:9430..95011622828751.118113-UTR-S-firma_M_contig924:9430..9501Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig924 9431..9501 +
1697105140.3962603-UTR-S-firma_M_contig924:9430..95011697105140.3962603-UTR-S-firma_M_contig924:9430..9501Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig924 9431..9501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig924.20183.1prot_S-firma_M_contig924.20183.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig924 8924..9430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig924.20183.1

>prot_S-firma_M_contig924.20183.1 ID=prot_S-firma_M_contig924.20183.1|Name=mRNA_S-firma_M_contig924.20183.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=169bp
SRIHRRRGFVKRVVNSLSACSSTATRPRSRYRSRYDQGLPKRRRRVARGA
RGRAPSAGVKAARSRRAPIVAAYPWCRPCRCLRYGGGRSLHLGERIAGGS
CCWWWWWSDGRREGVYHLLPLLLLLLLLGALLRLLLGAALTLLLGLPPHA
PLLLLRLLLLLRPLATGR*
back to top

mRNA from alignment at S-firma_M_contig924:8924..9501+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig924.20183.1 ID=mRNA_S-firma_M_contig924.20183.1|Name=mRNA_S-firma_M_contig924.20183.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=578bp|location=Sequence derived from alignment at S-firma_M_contig924:8924..9501+ (Sphaerotrichia firma Sfir_13m male)
TCCCGCATACATCGCCGCCGAGGGTTCGTCAAACGGGTTGTAAATTCTCT
CTCCGCTTGTAGCAGCACCGCCACCCGCCCCCGCTCCCGCTACCGCTCCC
GCTACGACCAAGGCCTGCCCAAACGCCGCCGCCGAGTCGCCCGAGGCGCC
CGTGGACGTGCGCCCTCTGCCGGAGTCAAAGCTGCCCGATCCCGGCGTGC
CCCTATAGTGGCTGCCTACCCTTGGTGCCGGCCCTGTAGGTGCCTGCGCT
ACGGGGGGGGGCGCTCTTTGCACCTGGGCGAAAGGATCGCTGGCGGCTCC
TGCTGCTGGTGGTGGTGGTGGTCCGACGGCCGGCGCGAAGGGGTCTATCA
TCTGCTGCCGTTGCTGCTGTTGTTGTTGTTGCTGGGGGCCTTGCTGAGGC
TGCTGCTGGGGGCCGCCTTGACCCTGCTGCTGGGGCTGCCACCACATGCC
CCCCTGCTGCTGTTGAGGCTGCTGCTGCTGCTGCGGCCCCTGGCTACTGG
TCGCTGAGTACTCCGAGAACGACCGGTTGCGGTTCGTGCTCCCCGAAGCA
AACGTGGTCGACGAAGGCATCATCCCTG
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig924:8924..9501+

>mRNA_S-firma_M_contig924.20183.1 ID=mRNA_S-firma_M_contig924.20183.1|Name=mRNA_S-firma_M_contig924.20183.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1014bp|location=Sequence derived from alignment at S-firma_M_contig924:8924..9501+ (Sphaerotrichia firma Sfir_13m male)
TCCCGCATACATCGCCGCCGAGGGTTCGTCAAACGGGTTGTAAATTCTCT
CTCCGCTTGTAGCAGCACCGCCACCCGCCCCCGCTCCCGCTACCGCTCCC
GCTACGACCAAGGCCTGCCCAAACGCCGCCGCCGAGTCGCCCGAGGCGCC
CGTGGACGTGCGCCCTCTGCCGGAGTCAAAGCTGCCCGATCCCGGCGTGC
CCCTATAGTGGCTGCCTACCCTTGGTGCCGGCCCTGTAGGTGCCTGCGCT
ACGGGGGGGGGCGCTCTTTGCACCTGGGCGAAAGGATCGCTGGCGGCTCC
TGCTGCTGGTGGTGGTGGTGGTCCGACGGCCGGCGCGAAGGGGTCTATCA
TCTGCTGCCGTTGCTGCTGTTGTTGTTGTTGCTGGGGGCCTTGCTGAGGC
TGCTGCTGGGGGCCGCCTTGACCCTGCTGCTGGGGCTGCCACCACATGCC
CCCCTGCTGCTGTTGAGGCTGCTGCTGCTGCTGCGGCCCCTGGCTACTGG
TCGCTGATCCCGCATACATCGCCGCCGAGGGTTCGTCAAACGGGTTGTAA
ATTCTCTCTCCGCTTGTAGCAGCACCGCCACCCGCCCCCGCTCCCGCTAC
CGCTCCCGCTACGACCAAGGCCTGCCCAAACGCCGCCGCCGAGTCGCCCG
AGGCGCCCGTGGACGTGCGCCCTCTGCCGGAGTCAAAGCTGCCCGATCCC
GGCGTGCCCCTATAGTGGCTGCCTACCCTTGGTGCCGGCCCTGTAGGTGC
CTGCGCTACGGGGGGGGGCGCTCTTTGCACCTGGGCGAAAGGATCGCTGG
CGGCTCCTGCTGCTGGTGGTGGTGGTGGTCCGACGGCCGGCGCGAAGGGG
TCTATCATCTGCTGCCGTTGCTGCTGTTGTTGTTGTTGCTGGGGGCCTTG
CTGAGGCTGCTGCTGGGGGCCGCCTTGACCCTGCTGCTGGGGCTGCCACC
ACATGCCCCCCTGCTGCTGTTGAGGCTGCTGCTGCTGCTGCGGCCCCTGG
CTACTGGTCGCTGA
back to top