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Homology
BLAST of mRNA_S-firma_M_contig9238.20180.1 vs. uniprot
Match: D8LLD7_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD7_ECTSI) HSP 1 Score: 413 bits (1062), Expect = 1.170e-137 Identity = 251/430 (58.37%), Postives = 303/430 (70.47%), Query Frame = 1
Query: 1 AAKQASNRLADSARGVSRGGTIILQKSARKMDKTRDLQKNESQRLTVVARDAAKGMEKAGRLTATATVSVAILRMRALAEAAKQARRGEGQT------RVGEAAKVGGGRALAALKRAVRVIAAARHFSEAG----KGAGRRQQQSKAGATNSAKHEGGQIHY---GNEDLFGEHRGSEASESNGEQKNVEEEEKEVDKPWETLTGAKAQAKVKLFQERHWVVTEIFYANLAAATERLEAARTQERGYDFSADFPKLWCEANRRGSQGERKTKYQRRRRSSATKRVANVYLRFVSSWQATGDDSGRFKLATAFQRWRLNTCDAAVDELSGSLSTPSRGGTATTAREFGFTPDEFAHVPRHNQSLKEMWETTG------GEHRLHDIVMNKARADRPLPWELCETYEREMVKRIDRRQAENNVPILPFPIC 1233
A+K+ + LA+SAR +S+ G I + SARKM TRD K ES+ LT A+ AA+ +EK GRL AT TV+VA+ RMRALAEAA+Q R +G+T RVGEAAKVGG +AL+AL+R+ I AAR+FSEAG +G RR Q + SA EGG + G+ L GE SE S+ E E V+KPW+ LT AKA+A+VK+FQERHW VTE FYANL A+ERLE RT+E+GYDFSADFPKLWC AN RGSQGER+ +Y+R+RRSSA+K+ ANVYLRF++ WQ GDDSGR KLA AF RWRLNTCDAAVD+LSGSLST SRGGTA + + + PRH SLKEMWE+ G H +H I+M KA+ADRPLP ELCE YEREMV+RIDRRQAENNVPI+P PIC
Sbjct: 125 ASKRETKHLAESARDISQSGGAIRELSARKMADTRDWLKVESEMLTEAAKGAARDLEKFGRLKATVTVAVAVNRMRALAEAARQ--RPDGETARNTGKRVGEAAKVGGEKALSALRRSFVAITAARYFSEAGPDPARGELRRHDQQRP---TSANLEGGDPNVADSGDGMLLGEDEDSEDSQRAREDFESEVPATAVEKPWDILTDAKAKAEVKMFQERHWAVTEKFYANLVTASERLEEKRTKEKGYDFSADFPKLWCAANMRGSQGEREIQYRRKRRSSASKKAANVYLRFITLWQVAGDDSGRSKLAKAFNRWRLNTCDAAVDDLSGSLSTLSRGGTAASE-------ESSTYAPRHIPSLKEMWESAAAAGEGEGTH-VHAIIMRKAQADRPLPRELCEAYEREMVERIDRRQAENNVPIVPMPIC 541
BLAST of mRNA_S-firma_M_contig9238.20180.1 vs. uniprot
Match: A0A6H5JXQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ3_9PHAE) HSP 1 Score: 323 bits (827), Expect = 1.090e-100 Identity = 230/485 (47.42%), Postives = 281/485 (57.94%), Query Frame = 1
Query: 1 AAKQASNRLADSARGVSRGGTIILQKSARKMDKTRDLQKNESQRLTVVARDAAKGMEKAGRLTATATVSVAILRMRALAEAAKQARRGEGQTRVGEAAKVGGGRALAALKRAVRVIAAARHFSEAGKGAGR----RQQQSKAGATN-SAKHEGGQIHYGNEDLFGEHRGSEASESNGEQKNVEEEEKEV-----DKPWETLTGAKAQAKVKLFQERHWVVTEIFYANLAAATERLEAARTQERG------------------------------YDFSADFPKLWCEANRRGSQGERKTKYQRRRRSSATKRVANVYLRF----------------------------VSSWQATGDDSGRFKLATAFQRWRLNTCDAAVDELSGSLSTPSRGGTATTAREFGFTPDEFAHVPRHNQSLKEMWETTG------GEHRLHDIVMNKARADRPLPWELCETYEREMVKRIDRRQAENNVPILPFPIC 1233
A+K+A+ LA+SAR +S+ G I Q SARKM TR K ES+ LT A+ AA+ +EK GRL A ATV+VA R E A++ + RVGEAAKVGG +ALAAL+R+ I A R+FSEA K A R RQ Q + + N + YG L G G E SE + Q+ E++E EV +K W+ LT AKA+A+VK+FQERHW TE FY NL ATERLE +T+E+G YDFSADFPKLWC A R SQGERK +Y+R+RRSSA+K+ ANV++ + Q GDDSGR KLA AF RWRLNTCDAAVD+LSGSLST S+GG A + + + PRH SL EMWE+ G H LH I+M K +ADRPLP ELCE YEREMV+RIDRRQAENNVPI+P PIC
Sbjct: 221 ASKRATKHLAESARDISQSGGAIRQLSARKMADTRGWLKVESEMLTEAAKGAARDLEKFGRLKAIATVAVA----RPDDETARKTGK-----RVGEAAKVGGEKALAALRRSFVAITAVRYFSEAVKDAARGGLRRQDQQRPTSANLGGDPDVADSGYGM--LLG---GDEDSEDS--QRAREDDESEVPATAEEKLWDILTDAKAKAEVKVFQERHWAATEKFYENLVTATERLEEKKTKEKGKYSILNGIVGKKQFLNVTPCLPLRSGYEKRYDFSADFPKLWCVATMRDSQGERKIQYRRKRRSSASKKAANVFMCLGLDVNRQRKREQSTVWQVLASIQNNKLVLQQHQEAGDDSGRSKLAKAFNRWRLNTCDAAVDDLSGSLSTLSKGGRAASE-------ESSTNAPRHIPSLMEMWESAAAAGEGEGTH-LHAIIMKKVQADRPLPRELCEAYEREMVERIDRRQAENNVPIVPMPIC 681
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-27_002250.1 |
| Exons | 5 |
| Model size | 1236 |
| Cds size | 1236 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622828750.8114617-CDS-S-firma_M_contig9238:1278..1655 | 1622828750.8114617-CDS-S-firma_M_contig9238:1278..1655 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig9238 1279..1655 - |
| 1697105140.1909134-CDS-S-firma_M_contig9238:1278..1655 | 1697105140.1909134-CDS-S-firma_M_contig9238:1278..1655 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig9238 1279..1655 - |
| 1622828750.8245678-CDS-S-firma_M_contig9238:1943..2101 | 1622828750.8245678-CDS-S-firma_M_contig9238:1943..2101 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig9238 1944..2101 - |
| 1697105140.2091599-CDS-S-firma_M_contig9238:1943..2101 | 1697105140.2091599-CDS-S-firma_M_contig9238:1943..2101 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig9238 1944..2101 - |
| 1622828750.838304-CDS-S-firma_M_contig9238:2549..2817 | 1622828750.838304-CDS-S-firma_M_contig9238:2549..2817 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig9238 2550..2817 - |
| 1697105140.2226682-CDS-S-firma_M_contig9238:2549..2817 | 1697105140.2226682-CDS-S-firma_M_contig9238:2549..2817 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig9238 2550..2817 - |
| 1622828750.8537617-CDS-S-firma_M_contig9238:3173..3330 | 1622828750.8537617-CDS-S-firma_M_contig9238:3173..3330 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig9238 3174..3330 - |
| 1697105140.2736251-CDS-S-firma_M_contig9238:3173..3330 | 1697105140.2736251-CDS-S-firma_M_contig9238:3173..3330 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig9238 3174..3330 - |
| 1622828750.8659935-CDS-S-firma_M_contig9238:3783..4059 | 1622828750.8659935-CDS-S-firma_M_contig9238:3783..4059 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig9238 3784..4059 - |
| 1697105140.2838612-CDS-S-firma_M_contig9238:3783..4059 | 1697105140.2838612-CDS-S-firma_M_contig9238:3783..4059 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig9238 3784..4059 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig9238.20180.1 >prot_S-firma_M_contig9238.20180.1 ID=prot_S-firma_M_contig9238.20180.1|Name=mRNA_S-firma_M_contig9238.20180.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=412bp
AAKQASNRLADSARGVSRGGTIILQKSARKMDKTRDLQKNESQRLTVVAR DAAKGMEKAGRLTATATVSVAILRMRALAEAAKQARRGEGQTRVGEAAKV GGGRALAALKRAVRVIAAARHFSEAGKGAGRRQQQSKAGATNSAKHEGGQ IHYGNEDLFGEHRGSEASESNGEQKNVEEEEKEVDKPWETLTGAKAQAKV KLFQERHWVVTEIFYANLAAATERLEAARTQERGYDFSADFPKLWCEANR RGSQGERKTKYQRRRRSSATKRVANVYLRFVSSWQATGDDSGRFKLATAF QRWRLNTCDAAVDELSGSLSTPSRGGTATTAREFGFTPDEFAHVPRHNQS LKEMWETTGGEHRLHDIVMNKARADRPLPWELCETYEREMVKRIDRRQAE NNVPILPFPIC* back to topmRNA from alignment at S-firma_M_contig9238:1279..4059- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_M_contig9238.20180.1 ID=mRNA_S-firma_M_contig9238.20180.1|Name=mRNA_S-firma_M_contig9238.20180.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2781bp|location=Sequence derived from alignment at S-firma_M_contig9238:1279..4059- (Sphaerotrichia firma Sfir_13m male) GCCGCCAAACAAGCAAGCAACCGTCTAGCGGACAGCGCGCGTGGAGTTTC
TCGCGGCGGAACCATAATTCTACAGAAGTCAGCCCGAAAGATGGACAAGA
CTCGAGATCTCCAGAAAAATGAGTCTCAGAGGCTTACCGTGGTGGCGAGG
GACGCGGCCAAGGGCATGGAAAAGGCTGGGCGGCTTACGGCCACAGCAAC
GGTCTCTGTTGCGATCCTTCGAATGCGGGCCCTGGCAGAAGCGGCGAAGC
AGGCAAGACGTGGCGAGGGCCAAACCGTGAAAAATCTGCAACACAGCACG
AGCCGGATGCTCAAGCTTATTTCTCAACATAGGGAGTGGCCACCGCCAAA
ATGTTCTCACTGCGTCAACAACCCTACAGGAGGAAAGGCATGATAATTTG
CAAACCTACACAACGCAGCCGCAAACCACCGCTCCTTTCATCATGTCGCT
CAGCTTTACGCCCGCCCTATGCTCGAAACTTGAACGAGCAACGTCTCTGG
CTGCCCAAGAAACGGCACAGGCCGATCGATGCTGCCCTAGACCGTAGCTT
TACCAAGCAAGCTCGCCTGCGTCTGCCCTTTCCCCCTTTCCGTGTTGCTG
TCGTGTGTTCAATCAAACGAGCAGCAGCGCAGAGCGACAATGCAGCAGTC
GCCAACCTTGAGTAAAGCTTCGGTGAAAAGCTTTGTCTCCACCTTCCCTC
GTCGCTTGCCCGACGCCGACACGGGCAAGCGGGTTGGCGAGGCGGCCAAG
GTGGGCGGCGGAAGAGCGCTCGCAGCCCTCAAGCGCGCCGTTAGAGTCAT
CGCCGCGGCGAGACACTTCAGCGAGGCCGGAAAAGGTGCAGGACGGCGAC
AACAGCAGAGCAAAGCAGGAGCTACCAACTCGGCAAGTGTTGATCGAACA
GATTGTAGGAAGAAAAAGGTACCAACGTTTGTACATCTTCGACCAGTATG
TCGAGGACGGAGTTTGAAGTACGCATTGAAGGTCGTGTCGAACGGCCGAA
TTCGAAAATGTCGCATCGTCGATGGTCGGGTCAACGATAGCCGTACCATC
CATCCCTGTGCTCCGCCGGAACCCTTGACTTTGACTTTCAAGCCGACCAA
AATCATCGAAGAAATTGACTCTTGGTGTGCAGTTCTGGTATCCGATCACG
GTTAATCGATCTCATGTACCGCGGCCGAGCACTCCTCGACCTGCTCTATC
GATTTACGTCTGGTAATCTGCAGGTAGGAAGAAGCGTAAAAGAGCATGAG
GGGGGGCAGATACACTACGGAAACGAAGACCTATTCGGTGAACATAGAGG
CAGCGAAGCTTCAGAGAGCAACGGAGAACAGAAAAATGTAGAGGAGGAGG
AGAAGGAGGTCGATAAGCCGTGGGAAACTCTGACCGGTGCCAAGGCTCAA
GCGAAGGTGAAGCTCTTTCAGGAGCGTCACTGGGTGGTGACGGAGATATT
TTACGCAAACTTGGCCGCTGCAACGGAGAGACTGGAGGCGGCAAGGACCC
AGGAGAGGGGGTAAGTTGTTCCAAAATGTCACTGTCGAGGTTGTGGCTTC
CACCGTGAACTACGTACTTGACCTGCAAAGACCGAGCGGTACTTCGTAAC
GGCCTGTCAAGTCACTTTGCACAACCAAACACGCATCCCTGGTGAGACGG
AGCAGTACTCCCTGTCACAACGTTGAGGAGGACCATTGACGTTTGCGCGC
TCGTTTCGTTAAGAGTGTTGAACCCAAACCTCAAACCTTACTCCGAAACT
CCTCACAATCTTTGCCTTCCTGGGTATTGGTATGCCCGCGAGGTATTATA
AGAGCTACTAGCGCGGAAGAATCTCGCATGCATCCCCGTCTTTGGATGTT
GGTCCCATATTGTACCCAGAAGGAGATCCGCGTCTACGTTGTCTCAGACG
AACGCGTTGAAACCTTTCCCTTTCTTCATCCTTCCCCTTCCTGTACGGAC
AAAATTAGGTACGATTTCTCGGCAGACTTCCCGAAATTGTGGTGCGAAGC
CAACAGGCGCGGCAGCCAAGGCGAAAGAAAGACTAAATACCAGCGGAGGA
GACGATCAAGCGCGACAAAGCGGGTAGCCAACGTATACCTTCGCTTCGTC
TCATCGTGGCAGGCAAGTCGCACCCGCTGATTTAGTCCCGTAGTCCCGCA
CATCGAAACCGTTTGGGGTCGCGCATCCTCGGAGTTAACTAGCGACGGGC
CGGTGTTCCGTGGATCAGAGAAAGCGTCGAACTCGGGGTTTCTATTGTCC
GTCTCAGAGGGGCTAAACAGAATGATAAAATCTAACGTCGACGCTCCCGA
ATCGCCCCGTAGAACAATCGCCACCTAGTTCCGATACTCTTGTACGCCCA
TCAAGCCGTCGCTTCCAACGAACCTGTGACACGAACAAACAACACTGCAG
GGAGCTGGCGATGACAGCGGCCGCTTCAAGCTAGCAACGGCCTTCCAGCG
CTGGCGGCTGAACACATGCGACGCCGCAGTGGACGAGCTCAGCGGTAGCT
TGTCAACGCCAAGCAGAGGCGGTACAGCAACAACAGCAAGGGAGTTCGGT
TTCACACCTGACGAGTTCGCGCACGTTCCGCGACACAACCAGAGCCTCAA
GGAGATGTGGGAAACCACCGGGGGTGAACACCGTTTGCACGATATTGTCA
TGAACAAGGCGCGCGCAGACCGACCCCTTCCGTGGGAGCTGTGTGAGACG
TACGAGCGGGAGATGGTCAAAAGAATCGACCGCCGCCAGGCAGAGAATAA
CGTCCCTATCCTACCCTTCCCGATATGTTAA back to topCoding sequence (CDS) from alignment at S-firma_M_contig9238:1279..4059- >mRNA_S-firma_M_contig9238.20180.1 ID=mRNA_S-firma_M_contig9238.20180.1|Name=mRNA_S-firma_M_contig9238.20180.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=2472bp|location=Sequence derived from alignment at S-firma_M_contig9238:1279..4059- (Sphaerotrichia firma Sfir_13m male) GCCGCCAAACAAGCAAGCAACCGTCTAGCGGACAGCGCGCGTGGAGTTTC TCGCGGCGGAACCATAATTCTACAGAAGTCAGCCCGAAAGATGGACAAGA CTCGAGATCTCCAGAAAAATGAGTCTCAGAGGCTTACCGTGGTGGCGAGG GACGCGGCCAAGGGCATGGAAAAGGCTGGGCGGCTTACGGCCACAGCAAC GGTCTCTGTTGCGATCCTTCGAATGCGGGCCCTGGCAGAAGCGGCGAAGC AGGCAAGACGTGGCGAGGGCCAAACCGCCGCCAAACAAGCAAGCAACCGT CTAGCGGACAGCGCGCGTGGAGTTTCTCGCGGCGGAACCATAATTCTACA GAAGTCAGCCCGAAAGATGGACAAGACTCGAGATCTCCAGAAAAATGAGT CTCAGAGGCTTACCGTGGTGGCGAGGGACGCGGCCAAGGGCATGGAAAAG GCTGGGCGGCTTACGGCCACAGCAACGGTCTCTGTTGCGATCCTTCGAAT GCGGGCCCTGGCAGAAGCGGCGAAGCAGGCAAGACGTGGCGAGGGCCAAA CCCGGGTTGGCGAGGCGGCCAAGGTGGGCGGCGGAAGAGCGCTCGCAGCC CTCAAGCGCGCCGTTAGAGTCATCGCCGCGGCGAGACACTTCAGCGAGGC CGGAAAAGGTGCAGGACGGCGACAACAGCAGAGCAAAGCAGGAGCTACCA ACTCGGCAACGGGTTGGCGAGGCGGCCAAGGTGGGCGGCGGAAGAGCGCT CGCAGCCCTCAAGCGCGCCGTTAGAGTCATCGCCGCGGCGAGACACTTCA GCGAGGCCGGAAAAGGTGCAGGACGGCGACAACAGCAGAGCAAAGCAGGA GCTACCAACTCGGCAAAGCATGAGGGGGGGCAGATACACTACGGAAACGA AGACCTATTCGGTGAACATAGAGGCAGCGAAGCTTCAGAGAGCAACGGAG AACAGAAAAATGTAGAGGAGGAGGAGAAGGAGGTCGATAAGCCGTGGGAA ACTCTGACCGGTGCCAAGGCTCAAGCGAAGGTGAAGCTCTTTCAGGAGCG TCACTGGGTGGTGACGGAGATATTTTACGCAAACTTGGCCGCTGCAACGG AGAGACTGGAGGCGGCAAGGACCCAGGAGAGGGGAGCATGAGGGGGGGCA GATACACTACGGAAACGAAGACCTATTCGGTGAACATAGAGGCAGCGAAG CTTCAGAGAGCAACGGAGAACAGAAAAATGTAGAGGAGGAGGAGAAGGAG GTCGATAAGCCGTGGGAAACTCTGACCGGTGCCAAGGCTCAAGCGAAGGT GAAGCTCTTTCAGGAGCGTCACTGGGTGGTGACGGAGATATTTTACGCAA ACTTGGCCGCTGCAACGGAGAGACTGGAGGCGGCAAGGACCCAGGAGAGG GGGTACGATTTCTCGGCAGACTTCCCGAAATTGTGGTGCGAAGCCAACAG GCGCGGCAGCCAAGGCGAAAGAAAGACTAAATACCAGCGGAGGAGACGAT CAAGCGCGACAAAGCGGGTAGCCAACGTATACCTTCGCTTCGTCTCATCG TGGCAGGCAAGTACGATTTCTCGGCAGACTTCCCGAAATTGTGGTGCGAA GCCAACAGGCGCGGCAGCCAAGGCGAAAGAAAGACTAAATACCAGCGGAG GAGACGATCAAGCGCGACAAAGCGGGTAGCCAACGTATACCTTCGCTTCG TCTCATCGTGGCAGGCAACTGGCGATGACAGCGGCCGCTTCAAGCTAGCA ACGGCCTTCCAGCGCTGGCGGCTGAACACATGCGACGCCGCAGTGGACGA GCTCAGCGGTAGCTTGTCAACGCCAAGCAGAGGCGGTACAGCAACAACAG CAAGGGAGTTCGGTTTCACACCTGACGAGTTCGCGCACGTTCCGCGACAC AACCAGAGCCTCAAGGAGATGTGGGAAACCACCGGGGGTGAACACCGTTT GCACGATATTGTCATGAACAAGGCGCGCGCAGACCGACCCCTTCCGTGGG AGCTGTGTGAGACGTACGAGCGGGAGATGGTCAAAAGAATCGACCGCCGC CAGGCAGAGAATAACGTCCCTATCCTACCCTTCCCGATATGTTAACTGGC GATGACAGCGGCCGCTTCAAGCTAGCAACGGCCTTCCAGCGCTGGCGGCT GAACACATGCGACGCCGCAGTGGACGAGCTCAGCGGTAGCTTGTCAACGC CAAGCAGAGGCGGTACAGCAACAACAGCAAGGGAGTTCGGTTTCACACCT GACGAGTTCGCGCACGTTCCGCGACACAACCAGAGCCTCAAGGAGATGTG GGAAACCACCGGGGGTGAACACCGTTTGCACGATATTGTCATGAACAAGG CGCGCGCAGACCGACCCCTTCCGTGGGAGCTGTGTGAGACGTACGAGCGG GAGATGGTCAAAAGAATCGACCGCCGCCAGGCAGAGAATAACGTCCCTAT CCTACCCTTCCCGATATGTTAA back to top
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