mRNA_S-firma_M_contig9233.20176.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9233.20176.1
Unique NamemRNA_S-firma_M_contig9233.20176.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9233.20176.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.410e-28
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 2 
Query:    2 RDRVPFACLRLVNPAMSITAGLGILRLSVAVGDVAVLDTRQPSRTRYPVVLHAGPMSPLPETAGSPQARSVR 217
            R+RVPFAC+RLVNPAMSITAGLGILRL+VA GDVAV+DTRQP RTRYPVVLHAGPMSPLPE+A S +    R
Sbjct: 2954 RERVPFACMRLVNPAMSITAGLGILRLAVAAGDVAVMDTRQPIRTRYPVVLHAGPMSPLPESADSARREDER 3025
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9233.20176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Y9_ECTSI1.410e-2880.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9233contigS-firma_M_contig9233:1421..2194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size289
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828750.5627282-CDS-S-firma_M_contig9233:1420..15911622828750.5627282-CDS-S-firma_M_contig9233:1420..1591Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9233 1421..1591 +
1697105140.0461793-CDS-S-firma_M_contig9233:1420..15911697105140.0461793-CDS-S-firma_M_contig9233:1420..1591Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9233 1421..1591 +
1622828750.5768425-CDS-S-firma_M_contig9233:2077..21941622828750.5768425-CDS-S-firma_M_contig9233:2077..2194Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9233 2078..2194 +
1697105140.0559-CDS-S-firma_M_contig9233:2077..21941697105140.0559-CDS-S-firma_M_contig9233:2077..2194Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9233 2078..2194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9233.20176.1prot_S-firma_M_contig9233.20176.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9233 1421..2194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9233.20176.1

>prot_S-firma_M_contig9233.20176.1 ID=prot_S-firma_M_contig9233.20176.1|Name=mRNA_S-firma_M_contig9233.20176.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=96bp
PRPRAVRVPAVGQPGDVHHGGAGHPEAVGGGRRRGGAGHQAAVQDEIPGG
VARGSDESSAGDRRLPPGPQRPHQHQHPHQQSRTRQSRKRSSSTRR
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mRNA from alignment at S-firma_M_contig9233:1421..2194+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9233.20176.1 ID=mRNA_S-firma_M_contig9233.20176.1|Name=mRNA_S-firma_M_contig9233.20176.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=774bp|location=Sequence derived from alignment at S-firma_M_contig9233:1421..2194+ (Sphaerotrichia firma Sfir_13m male)
CCGAGACCGCGTGCCGTTCGCGTGCCTGCGGTTGGTCAACCCGGCGATGT
CCATCACGGCGGGGCTGGGCATCCTGAGGCTGTCGGTGGCGGTCGGCGAC
GTGGCGGTGCTGGACACCAGGCAGCCGTCCAGGACGAGATACCCGGTGGT
GTTGCACGCGGGTCCGATGAGGTGCGTGCGTGCGGTGCAGTAGGTGATTC
AGGGGTTCGGCGCTCGTGTCCCGGAACGTAAGTTGCTTGTGGTCTTGGAC
GGCTTCGTGGATGTTCGGTGTCGGAGGGTTGGTACTGTGTGATACGCCGG
CCGGCTGACCTGGGCAGCTCTGGGATGCAGGTGAAGAAGGCCCGTCAAGT
GGAGAGCTTAGAACGTTTTTGACCTTTGGTTCGGCAAATGTTTTTTTTTA
GGTGTGTCGTCGGCAGCTGCTTGTAGAACACCCCGTTCGCTGTTCGGTGG
GGGTTTCTGTGGGCAAGCACCAACACCCTTCGGGTGGAGCAAATAAAATC
GCGGTGGGTTGGTTTTGCGTCACTTAAACTGCGATGTCTGAGCTCTGACA
TACTGCCGCCGTTTCCGTCTGGTCTTGGATCGTTGATCTTGATGTTTGTG
TTATGCTGATACGTGTCTCGAACCCCCGGCGGGCCGGAATCTCCCGATGC
CTTGCAGTCCTCTGCCGGAGACCGCCGGCTCCCCCCAGGCCCGCAGCGTC
CGCACCAACACCAACACCCGCACCAACAAAGCCGGACACGACAAAGCCGG
AAGAGGAGCAGCAGCACCAGGAGG
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Coding sequence (CDS) from alignment at S-firma_M_contig9233:1421..2194+

>mRNA_S-firma_M_contig9233.20176.1 ID=mRNA_S-firma_M_contig9233.20176.1|Name=mRNA_S-firma_M_contig9233.20176.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=576bp|location=Sequence derived from alignment at S-firma_M_contig9233:1421..2194+ (Sphaerotrichia firma Sfir_13m male)
CCGAGACCGCGTGCCGTTCGCGTGCCTGCGGTTGGTCAACCCGGCGATGT
CCATCACGGCGGGGCTGGGCATCCTGAGGCTGTCGGTGGCGGTCGGCGAC
GTGGCGGTGCTGGACACCAGGCAGCCGTCCAGGACGAGATACCCGGTGGT
GTTGCACGCGGGTCCGATGAGCCGAGACCGCGTGCCGTTCGCGTGCCTGC
GGTTGGTCAACCCGGCGATGTCCATCACGGCGGGGCTGGGCATCCTGAGG
CTGTCGGTGGCGGTCGGCGACGTGGCGGTGCTGGACACCAGGCAGCCGTC
CAGGACGAGATACCCGGTGGTGTTGCACGCGGGTCCGATGAGTCCTCTGC
CGGAGACCGCCGGCTCCCCCCAGGCCCGCAGCGTCCGCACCAACACCAAC
ACCCGCACCAACAAAGCCGGACACGACAAAGCCGGAAGAGGAGCAGCAGC
ACCAGGAGGTCCTCTGCCGGAGACCGCCGGCTCCCCCCAGGCCCGCAGCG
TCCGCACCAACACCAACACCCGCACCAACAAAGCCGGACACGACAAAGCC
GGAAGAGGAGCAGCAGCACCAGGAGG
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