mRNA_S-firma_M_contig9228.20171.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9228.20171.1
Unique NamemRNA_S-firma_M_contig9228.20171.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9228.20171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9228contigS-firma_M_contig9228:93..2592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size962
Cds size507
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828749.95016-UTR-S-firma_M_contig9228:92..1571622828749.95016-UTR-S-firma_M_contig9228:92..157Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9228 93..157 -
1697105139.6044338-UTR-S-firma_M_contig9228:92..1571697105139.6044338-UTR-S-firma_M_contig9228:92..157Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9228 93..157 -
1622828749.966923-UTR-S-firma_M_contig9228:167..2201622828749.966923-UTR-S-firma_M_contig9228:167..220Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9228 168..220 -
1697105139.6142862-UTR-S-firma_M_contig9228:167..2201697105139.6142862-UTR-S-firma_M_contig9228:167..220Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9228 168..220 -
1622828750.0334008-UTR-S-firma_M_contig9228:2255..25921622828750.0334008-UTR-S-firma_M_contig9228:2255..2592Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9228 2256..2592 -
1697105139.6763432-UTR-S-firma_M_contig9228:2255..25921697105139.6763432-UTR-S-firma_M_contig9228:2255..2592Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9228 2256..2592 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828749.9814281-CDS-S-firma_M_contig9228:220..5381622828749.9814281-CDS-S-firma_M_contig9228:220..538Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9228 221..538 -
1697105139.6257324-CDS-S-firma_M_contig9228:220..5381697105139.6257324-CDS-S-firma_M_contig9228:220..538Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9228 221..538 -
1622828749.995879-CDS-S-firma_M_contig9228:1302..13881622828749.995879-CDS-S-firma_M_contig9228:1302..1388Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9228 1303..1388 -
1697105139.638097-CDS-S-firma_M_contig9228:1302..13881697105139.638097-CDS-S-firma_M_contig9228:1302..1388Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9228 1303..1388 -
1622828750.008411-CDS-S-firma_M_contig9228:1862..19571622828750.008411-CDS-S-firma_M_contig9228:1862..1957Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9228 1863..1957 -
1697105139.651711-CDS-S-firma_M_contig9228:1862..19571697105139.651711-CDS-S-firma_M_contig9228:1862..1957Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9228 1863..1957 -
1622828750.019996-CDS-S-firma_M_contig9228:2247..22551622828750.019996-CDS-S-firma_M_contig9228:2247..2255Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9228 2248..2255 -
1697105139.6637254-CDS-S-firma_M_contig9228:2247..22551697105139.6637254-CDS-S-firma_M_contig9228:2247..2255Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9228 2248..2255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9228.20171.1prot_S-firma_M_contig9228.20171.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9228 221..2255 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9228.20171.1

>prot_S-firma_M_contig9228.20171.1 ID=prot_S-firma_M_contig9228.20171.1|Name=mRNA_S-firma_M_contig9228.20171.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=169bp
MTSFLVLGPKGLVMAGGLYLAGALPTSAAASSSSGKDDCGGDATDNITWT
LFNWFSRILVGLAILRCLVKLFMEKLGECIEQRRAAEALALSSPEEADAS
SSSPEEKGATPEEANDEETGRAPAGPAALPSPLPAAGAPARPTPADIIAA
LLSTLGAVCNGINTTFFR*
back to top

mRNA from alignment at S-firma_M_contig9228:93..2592-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9228.20171.1 ID=mRNA_S-firma_M_contig9228.20171.1|Name=mRNA_S-firma_M_contig9228.20171.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2500bp|location=Sequence derived from alignment at S-firma_M_contig9228:93..2592- (Sphaerotrichia firma Sfir_13m male)
CGATGCCAAACGCGAAGGGTCATCCGAGGGATAGGCGGTTCAGGGGATGG
GTGTAGCAAGGTTTGGGTGTTGAAGCCAATAGGTGGCGATTGTTCGAAAT
ATGGTTTCCGCGTGCTGACGGAAGTTGGTACACTCTTCGACCAACGGTCG
ACGCCGACGTAGGCGGTTGTTTGTCACGTGCGAAAGCCCTTCGCCGCTCC
TCAAGATACGACGTTGGGTCAAGTACGCCTTCCAGTGGTCGACGTTTATG
ATACAGTGTACACATCGTCCTCAATTTTGCTCGTGAAAGCAGGTGGTCAA
GTCGTCCCAGCCGGGCATCGCCGCCGCCCTCTTCGGGATGACCAGGTGCG
CTTGCATGGCATGACATGGCATGGGTAGGGTTCGCAAGATGCGTTTCGAA
AGCAAGCAAGCAAGCACAGCAAGCAGGCGTGGCAAAAAGCTGAAACCCGA
TCAAAGCGATGTGCTGGTCCATGCTTGCCTGTTGTCGCGGCGTCCGCTGC
GTGCTCTGTAGGTAGACAGGCGATTGGTTACCACCACCGACGCATACTGC
CGTTAAGTCTTCGAAATATGACGTAAAAATCAAACATTCTCCTCGTTCCT
GCGTCACGGATGTTTTTCTTTTCTTGTGGTGACAGCTTCCTCGTGCTAGG
GCCGAAGGGTCTTGTCATGGCCGGGGGCCTGTACCTCGCTGGAGCGCTCC
CGACGAGCGCTGCCGCTTCGTCCAGCTCGGGTAAGCTCAAACACAGAGGC
TTTGTTTCATTTTCTTTTCAATACATTTTCTACAGGCGCCAACCGTGTAC
GTCCGTACTGTGAACAAGTAGTTCCAGGGGGACTAGACTGTTGTATACAA
ACACTTAGCCCTCCCCGTCCCAGCCAACAGCACGAAATCTTCTGTTTCGC
ATGTTCCCTATCCCGGGGCTCAACGGTGCTAACTCTGGACCCGTCATGAG
GCTACGTTCGGCTTGCCGCATCGTGCTCGCCTTGCGACCGGAGTTGCTTT
TTCGTGACAACAAGAGCACCGTTTCCTCCGCACAGCAGTCGTCGTCCGAT
GTCTCAAGCTCGTGGCCCACCGAGTCCCAACGATAACCCTGTTCCCTCTC
GCAATAAACATTGTATCAACTTTTCCCCCCCCGCAAACAAAGACCGCAAT
TAAAATCTACGATAACATCGTGTAACTGATGCCGGACCGCCTTCCAATCG
GCAGGAAAAGACGACTGCGGGGGTGACGCGACGGACAACATCACCTGGAC
TCTCTTCAACTGGTTCTCGCGGATCTTGGTGGGCCTGGCGGTGAGTTTTT
GTTTTGTTTTTTTAAACATCACACCAGTTGTGAGGAAGTAGGCCTCATCT
TCAAGGCGTCCTTTGTTCGCAAGGGCGCAGAGTTTCCCCACCTTGTGTGT
GTGCGTGTGTGTTGGTTTTTGTGCAGACTGTTGGTGTTCGCTAACTTTTT
CGTGGGTAGAATAGATGGAAACCTGTTGTGTTATCTTCGTTGTTTTCTTC
GTTGTTGTCTTCGTTATTTGGTGCTTTGCGAATGCTATTACTATTTTACT
GCTGTTCGTGCTGCTCTTCTACAACAGTGGGGTGTCTGCGCTTTTCACAC
ACGGCAGCCTTTTTTTCCATGTGAAAGCTCTCATCGATGGTCAAACATAA
CAAGTCGGAGGCGAAGTAGGTTTAGTTTCCGAGCGTGAGCGTGGCGTTTC
TCCGAAGATGTTGCTTTAAAGTGTCTAGTCGTGGGTGGTCCGTGGTCGAA
CAAGGTCCCGAAGGCCTGGGGCGCTCCATCCGCCCGTACCTATATACTGA
AGCGCAAAATTGGTATTATACTCGGTGTTCTACACCAATGCTTCAAGATT
TCGTGCACAGACCAGGGTGGGGCGAGGTACATTACGTCAGGGAGAAAATG
CCGTCTTTTAGAGAGCCAGACGTGTGGATGTATTCGTCCATTCCATGCCC
TTCGACGCCATGAGCTTCCTCACAAGACGAACAGCAGTGACACTCGAGAC
CACTTCCCCGCCTCTTCCTTCTCCGAAACGTCCACCACCCCCGTGTCGTG
GCAGATCCTGCGCTGCCTCGTGAAGCTCTTCATGGAGAAGCTGGGGGAGT
GCATCGAGCAGAGGCGCGCCGCGGAAGCGCTGGCCTTGTCCTCGCCCGAG
GAAGCCGACGCTTCCTCGTCATCGCCCGAGGAAAAGGGGGCCACGCCCGA
AGAAGCCAACGACGAGGAAACCGGTAGGGCCCCTGCCGGCCCTGCCGCTC
TGCCGTCCCCCCTCCCCGCAGCAGGTGCTCCCGCTCGCCCGACCCCGGCC
GACATCATTGCGGCGTTGCTCTCCACTCTCGGGGCCGTCTGCAACGGAAT
CAACACGACGTTTTTCCGCTGAGTTGGTTGACGAGAAAGAAGGGCGCAAG
AGTTCGTGAGCTCTTCGTGTGGGGGGCGAGGGTAGATTTTATCTGCCGCA
CGTACAAGTGGGGCGTGTCATGGTGTTGTTTGTTTTTTGGTGGTTGGGGG
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig9228:93..2592-

>mRNA_S-firma_M_contig9228.20171.1 ID=mRNA_S-firma_M_contig9228.20171.1|Name=mRNA_S-firma_M_contig9228.20171.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1014bp|location=Sequence derived from alignment at S-firma_M_contig9228:93..2592- (Sphaerotrichia firma Sfir_13m male)
ATGACCAGATGACCAGCTTCCTCGTGCTAGGGCCGAAGGGTCTTGTCATG
GCCGGGGGCCTGTACCTCGCTGGAGCGCTCCCGACGAGCGCTGCCGCTTC
GTCCAGCTCGGCTTCCTCGTGCTAGGGCCGAAGGGTCTTGTCATGGCCGG
GGGCCTGTACCTCGCTGGAGCGCTCCCGACGAGCGCTGCCGCTTCGTCCA
GCTCGGGAAAAGACGACTGCGGGGGTGACGCGACGGACAACATCACCTGG
ACTCTCTTCAACTGGTTCTCGCGGATCTTGGTGGGCCTGGCGGAAAAGAC
GACTGCGGGGGTGACGCGACGGACAACATCACCTGGACTCTCTTCAACTG
GTTCTCGCGGATCTTGGTGGGCCTGGCGATCCTGCGCTGCCTCGTGAAGC
TCTTCATGGAGAAGCTGGGGGAGTGCATCGAGCAGAGGCGCGCCGCGGAA
GCGCTGGCCTTGTCCTCGCCCGAGGAAGCCGACGCTTCCTCGTCATCGCC
CGAGGAAAAGGGGGCCACGCCCGAAGAAGCCAACGACGAGGAAACCGGTA
GGGCCCCTGCCGGCCCTGCCGCTCTGCCGTCCCCCCTCCCCGCAGCAGGT
GCTCCCGCTCGCCCGACCCCGGCCGACATCATTGCGGCGTTGCTCTCCAC
TCTCGGGGCCGTCTGCAACGGAATCAACACGACGTTTTTCCGCTGAATCC
TGCGCTGCCTCGTGAAGCTCTTCATGGAGAAGCTGGGGGAGTGCATCGAG
CAGAGGCGCGCCGCGGAAGCGCTGGCCTTGTCCTCGCCCGAGGAAGCCGA
CGCTTCCTCGTCATCGCCCGAGGAAAAGGGGGCCACGCCCGAAGAAGCCA
ACGACGAGGAAACCGGTAGGGCCCCTGCCGGCCCTGCCGCTCTGCCGTCC
CCCCTCCCCGCAGCAGGTGCTCCCGCTCGCCCGACCCCGGCCGACATCAT
TGCGGCGTTGCTCTCCACTCTCGGGGCCGTCTGCAACGGAATCAACACGA
CGTTTTTCCGCTGA
back to top