mRNA_S-firma_M_contig9221.20168.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9221.20168.1
Unique NamemRNA_S-firma_M_contig9221.20168.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9221.20168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9221contigS-firma_M_contig9221:3736..4233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size498
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9221.20168.1prot_S-firma_M_contig9221.20168.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9221 3879..4220 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828749.7220128-UTR-S-firma_M_contig9221:3735..38781622828749.7220128-UTR-S-firma_M_contig9221:3735..3878Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9221 3736..3878 +
1697105139.4466836-UTR-S-firma_M_contig9221:3735..38781697105139.4466836-UTR-S-firma_M_contig9221:3735..3878Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9221 3736..3878 +
1622828749.7493672-UTR-S-firma_M_contig9221:4220..42331622828749.7493672-UTR-S-firma_M_contig9221:4220..4233Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9221 4221..4233 +
1697105139.4777148-UTR-S-firma_M_contig9221:4220..42331697105139.4777148-UTR-S-firma_M_contig9221:4220..4233Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9221 4221..4233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828749.7344897-CDS-S-firma_M_contig9221:3878..42201622828749.7344897-CDS-S-firma_M_contig9221:3878..4220Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9221 3879..4220 +
1697105139.4575384-CDS-S-firma_M_contig9221:3878..42201697105139.4575384-CDS-S-firma_M_contig9221:3878..4220Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9221 3879..4220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9221.20168.1

>prot_S-firma_M_contig9221.20168.1 ID=prot_S-firma_M_contig9221.20168.1|Name=mRNA_S-firma_M_contig9221.20168.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=114bp
MDRTLHSWDCAIEPLMFCRKPLFKNSRTPCVPTRIRHVALSLPLNSRFHF
PTSFCLSHPLQAAPVACCSEWGVRKTNAVPPKTRWRRRTTQTKVPGKFPH
ATGIDPLACSHGS*
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mRNA from alignment at S-firma_M_contig9221:3736..4233+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9221.20168.1 ID=mRNA_S-firma_M_contig9221.20168.1|Name=mRNA_S-firma_M_contig9221.20168.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=498bp|location=Sequence derived from alignment at S-firma_M_contig9221:3736..4233+ (Sphaerotrichia firma Sfir_13m male)
GCGAAAAGTTCCACCGAAATACGAAAGATTCCACCTAAAAAGCCAAACAA
ATGAACCGCTGACGGTTTTGATGTGTTGCGGGTTTTGTGCCCGTAAAGGG
TGTGAACGGGTGAGGGAGGGTCAGCGTGTATACAACAGTCCCCATGGACC
GAACTCTTCACAGTTGGGATTGTGCGATAGAACCGCTGATGTTTTGTAGA
AAACCTCTTTTTAAAAATAGTCGCACCCCATGTGTCCCGACCCGCATCAG
GCACGTCGCGCTGTCTTTGCCGTTAAACTCGCGATTCCATTTTCCAACAT
CGTTTTGCCTTTCGCACCCCCTACAAGCAGCCCCTGTAGCCTGCTGCTCT
GAGTGGGGGGTGCGGAAAACGAATGCTGTGCCCCCCAAAACACGCTGGCG
ACGTCGGACAACGCAGACCAAAGTTCCAGGAAAGTTCCCTCACGCAACGG
GGATTGATCCGCTGGCCTGTTCACATGGATCGTAATTACCGACCCCCC
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Coding sequence (CDS) from alignment at S-firma_M_contig9221:3736..4233+

>mRNA_S-firma_M_contig9221.20168.1 ID=mRNA_S-firma_M_contig9221.20168.1|Name=mRNA_S-firma_M_contig9221.20168.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=684bp|location=Sequence derived from alignment at S-firma_M_contig9221:3736..4233+ (Sphaerotrichia firma Sfir_13m male)
ATGGACCGAACTCTTCACAGTTGGGATTGTGCGATAGAACCGCTGATGTT
TTGTAGAAAACCTCTTTTTAAAAATAGTCGCACCCCATGTGTCCCGACCC
GCATCAGGCACGTCGCGCTGTCTTTGCCGTTAAACTCGCGATTCCATTTT
CCAACATCGTTTTGCCTTTCGCACCCCCTACAAGCAGCCCCTGTAGCCTG
CTGCTCTGAGTGGGGGGTGCGGAAAACGAATGCTGTGCCCCCCAAAACAC
GCTGGCGACGTCGGACAACGCAGACCAAAGTTCCAGGAAAGTTCCCTCAC
GCAACGGGGATTGATCCGCTGGCCTGTTCACATGGATCGTAAATGGACCG
AACTCTTCACAGTTGGGATTGTGCGATAGAACCGCTGATGTTTTGTAGAA
AACCTCTTTTTAAAAATAGTCGCACCCCATGTGTCCCGACCCGCATCAGG
CACGTCGCGCTGTCTTTGCCGTTAAACTCGCGATTCCATTTTCCAACATC
GTTTTGCCTTTCGCACCCCCTACAAGCAGCCCCTGTAGCCTGCTGCTCTG
AGTGGGGGGTGCGGAAAACGAATGCTGTGCCCCCCAAAACACGCTGGCGA
CGTCGGACAACGCAGACCAAAGTTCCAGGAAAGTTCCCTCACGCAACGGG
GATTGATCCGCTGGCCTGTTCACATGGATCGTAA
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