mRNA_S-firma_M_contig922.20166.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig922.20166.1
Unique NamemRNA_S-firma_M_contig922.20166.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig922.20166.1 vs. uniprot
Match: D7FIT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIT7_ECTSI)

HSP 1 Score: 406 bits (1043), Expect = 2.570e-136
Identity = 197/237 (83.12%), Postives = 214/237 (90.30%), Query Frame = 1
Query:  127 MITPPFRFGAVEADVFRSAQPTLKNYRFLSRLKLRTVVSIAPEGPMEDEAMFCREHAAQLVPIRAELYREEAVTVSSQQVAQVLAILVDKNRLPALVHCPDGRVLCGVVLWCLRRLQCWDDRASAAEFARFSGALPPREVEKFVASFGEEVTVPQSVPRWLWGGDRAHWHPTIRVRHQPPLEVFEPDPIPPHQTLRCVRVRRGVNKCTLRPKGEVHTRTDYLRMRRGHMHAHNKVPG 837
            ++ PPFRFGAVEADVFRSAQPTLKNYRFLSRLKLRTVVSIAPEGPMEDEAMFCREH+AQLVP+RAELYREEAVTVS QQVAQVL+IL DK+RLPALVHCPDGRVL GVVLWCLRRLQCWDDRASAAEFARFSG LP REVEKFV S+GEEVTVP +VPRWLWGGDRAHWHP IR+RHQPPLEVFEPDP+P  QTLR    RR + K +   +GEV+TRTDYLR+RR +MHA NK+PG
Sbjct:    3 IVPPPFRFGAVEADVFRSAQPTLKNYRFLSRLKLRTVVSIAPEGPMEDEAMFCREHSAQLVPVRAELYREEAVTVSCQQVAQVLSILADKDRLPALVHCPDGRVLSGVVLWCLRRLQCWDDRASAAEFARFSGVLPSREVEKFVESYGEEVTVPANVPRWLWGGDRAHWHPCIRIRHQPPLEVFEPDPLPSQQTLRLGETRR-LRKPS---RGEVYTRTDYLRVRRDYMHAKNKIPG 235          
BLAST of mRNA_S-firma_M_contig922.20166.1 vs. uniprot
Match: A0A6H5JCL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCL7_9PHAE)

HSP 1 Score: 390 bits (1003), Expect = 2.290e-130
Identity = 195/256 (76.17%), Postives = 212/256 (82.81%), Query Frame = 1
Query:  127 MITPPFRFGAVEADVFRSAQPTLKNYRFLSRLKLRTVVSIAPEGPMEDEAMFCREHAAQLVPIRAELYREEAVTVSSQQVAQVLAILVDKNRLPALVHCPDGRVLCGVVLWCLRRLQCWDDRASAAEFARFSGALPPREVEKFVASFGEEVTVPQSVPRWLWGGDRAHWHPTIRVRHQPPLEVFEPDPIPPHQTLRCVRVRRGVNKCTLRPKGEVHTRTDYLRMRRGHM--HAHNKVP---------GVIGADGLG 861
            ++ PPFRFGAVEADVFRSAQPTLKNYRFLSRLKLRTVVSIAPEGPMEDEAMFCREH+AQLVP+RAELYREEAVTVS QQVAQVL+IL DK+RLPALVHCPDGRVL G VLWCLRRLQCWDDRASAAEFARFSG LP REVEKFV S+GEEVT+P +VPRWLWGGDRAHWHP IR+RHQPPLEVFEPDP+P  QTLR                GEV+TRTDYLR+RR +M  +A NK+P         G +GA G G
Sbjct:    3 IVPPPFRFGAVEADVFRSAQPTLKNYRFLSRLKLRTVVSIAPEGPMEDEAMFCREHSAQLVPVRAELYREEAVTVSCQQVAQVLSILADKDRLPALVHCPDGRVLSGAVLWCLRRLQCWDDRASAAEFARFSGVLPSREVEKFVESYGEEVTIPANVPRWLWGGDRAHWHPCIRIRHQPPLEVFEPDPLPSQQTLR----------------GEVYTRTDYLRVRRDYMNMYAKNKIPEGAGGRRGGGSVGARGQG 242          
BLAST of mRNA_S-firma_M_contig922.20166.1 vs. uniprot
Match: A0A836CAP9_9STRA (Tyrosine phosphatase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAP9_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.010e-54
Identity = 108/230 (46.96%), Postives = 140/230 (60.87%), Query Frame = 1
Query:  127 MITPPFRFGAVEADVFRSAQPTLKNYRFLSRLKLRTVVSIAPEGPMEDEAMFCREHAAQLVPIRAELYREEAVTVSSQQVAQVLAILVDKNRLPALVHCPDGRVLCGVVLWCLRRLQCWDDRASAAEFARFS-GALPPREVEKFVASFGEEVTVPQSVPRWLWGGDRAHWHPTIRVRHQPPLEVFEPDPIPPHQTLRCVRVRRGVNKCTLRPKGEVHTRTDYLRMRRGHM 813
            ++ PP +FG VE DVFRS  PTLKN R+L+RLKL+T+V+I PE P++D   FCRE   +L+ + A+ Y+EE +TV+ QQVAQ+L+ LVD  RLPALVHC DG  + G V+ CLR+LQ W     + E  +++ G    REV KFV  F EEVTV  +VP WLW G R   HP IR+RH PPLE          Q L        + K   +       R+D +R RR HM
Sbjct:   13 LVIPPSKFGLVEQDVFRSGHPTLKNLRYLTRLKLKTMVAIVPEEPLKDLCDFCREQDIELLHVAADKYKEEGMTVTPQQVAQILSALVDPQRLPALVHCLDGGAVTGTVIMCLRKLQGWSWAGLSEESRKYTAGRGMHREVNKFVQDFTEEVTVGAAVPPWLWQGQRERLHPAIRLRHDPPLEEAREGGAKDGQALH-----EEIQKTLAQ------ARSDNIRWRRVHM 231          
BLAST of mRNA_S-firma_M_contig922.20166.1 vs. uniprot
Match: A0A024G700_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G700_9STRA)

HSP 1 Score: 164 bits (415), Expect = 5.440e-43
Identity = 80/178 (44.94%), Postives = 112/178 (62.92%), Query Frame = 1
Query:  130 ITPPFRFGAVEADVFRSAQPTLKNYRFLSRLKLRTVVSIAPEGPMEDEAMFCREHAAQLVPIRAELYREEAVTVSSQQVAQVLAILVDKNRLPALVHCPDGRVLCGVVLWCLRRLQCWDDRASAAEFARFSG--ALPPREVEKFVASFGEEVTVPQSVPRWLWGGDRAHWHPTIRVRH 657
            + PPFRF  VE  V+R + PTLKN+RFL RLKL+T+VSI PE P  D   FC+E         AE Y  + VTVS    +Q++ IL+D+++ P  +HC DG  + G+V+  LR+LQ W   A+ +EF RF+   ++   E E ++A+F EE+ VP  +P WLWGG   H HPT+ +RH
Sbjct:    7 LIPPFRFNIVELLVYRGSYPTLKNFRFLKRLKLKTIVSITPESPSSDVLEFCQEEGITHYQFLAEKYSSDNVTVSPAIASQIVHILIDQSKFPIYIHCLDGSNVTGIVIMILRKLQNWTKVATISEFCRFTRDHSIEKNESE-YLATFCEEIVVPSKIPGWLWGGHCIHKHPTLVIRH 183          
BLAST of mRNA_S-firma_M_contig922.20166.1 vs. uniprot
Match: A0A8K1FLW5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLW5_PYTOL)

HSP 1 Score: 159 bits (402), Expect = 3.780e-41
Identity = 76/183 (41.53%), Postives = 115/183 (62.84%), Query Frame = 1
Query:  130 ITPPFRFGAVEADVFRSAQPTLKNYRFLSRLKLRTVVSIAPEGPMEDEAMFCREHAAQLVPIRAELYREEAVTVSSQQVAQVLAILVDKNRLPALVHCPDGRVLCGVVLWCLRRLQCWDDRASAAEFARFSGALP-PREVEKFVASFGEEVTVPQSVPRWLWGGDRAHWHPTIRVRHQPPLEV 675
            + PPFRF +V+  ++R + PTLKN+RFL RL+L+T+VS+ PE P  D   FC++         AE +  + VTVS   VAQ+L +++ +  LP  +HC DG  + G+++  LR+LQ W   A+ +EF RF+      ++  ++++SF EE+ VP  VPRWLW G R   HPT+ + HQP LE+
Sbjct:    8 LIPPFRFSSVQHQLYRGSYPTLKNFRFLRRLQLKTIVSVIPEPPTADLVEFCQQEKITNYHFCAEKFTSDNVTVSPSMVAQILQLMIKQENLPLYIHCLDGANVAGIIIMVLRKLQNWTKVATVSEFCRFTRDHGIEKDESEYLSSFSEEIVVPADVPRWLWNGIRITKHPTMII-HQPDLEM 189          
BLAST of mRNA_S-firma_M_contig922.20166.1 vs. uniprot
Match: A0A2D4CE66_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CE66_PYTIN)

HSP 1 Score: 157 bits (396), Expect = 2.850e-40
Identity = 75/183 (40.98%), Postives = 115/183 (62.84%), Query Frame = 1
Query:  130 ITPPFRFGAVEADVFRSAQPTLKNYRFLSRLKLRTVVSIAPEGPMEDEAMFCREHAAQLVPIRAELYREEAVTVSSQQVAQVLAILVDKNRLPALVHCPDGRVLCGVVLWCLRRLQCWDDRASAAEFARFSGALP-PREVEKFVASFGEEVTVPQSVPRWLWGGDRAHWHPTIRVRHQPPLEV 675
            + PPFRF +V+  ++R + PTLKN+RFL RL+L+T+VS+ PE P  D   FC++         AE +  + VTVS   VAQ+L +L+++  LP  +HC DG  + G+++  LR+LQ W   A+ +EF RF+      ++  +++++F EE+ VP  VP+WLW G R   HPT+ + HQP LE 
Sbjct:    8 LIPPFRFSSVQHQLYRGSXPTLKNFRFLRRLQLKTIVSVIPEAPTSDLVEFCQQEKIANHHFYAEKFTSDNVTVSPATVAQILXLLINQENLPLYIHCLDGANVTGIIIMILRKLQNWTKVATISEFCRFTRDHGIEKDESEYLSTFSEEIVVPTDVPKWLWNGIRILKHPTMII-HQPDLET 189          
BLAST of mRNA_S-firma_M_contig922.20166.1 vs. uniprot
Match: H3HBF1_PHYRM (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=H3HBF1_PHYRM)

HSP 1 Score: 156 bits (394), Expect = 5.630e-40
Identity = 81/186 (43.55%), Postives = 111/186 (59.68%), Query Frame = 1
Query:  121 AVMITPPFRFGAVEADVFRSAQPTLKNYRFLSRLKLRTVVSIAPEGPMEDEAMFCREHAAQLVPIRAELYREEAVTVSSQQVAQVLAILVDKNRLPALVHCPDGRVLCGVVLWCLRRLQCWDDRASAAEFARFSGALP-PREVEKFVASFGEEVTVPQSVPRWLWGGDRAHWHPTIRVRHQPPLEV 675
            A  + PPFRF  V+  ++R A PTLKN+RFL RL L+TVVS+ PE P  D A FC      L    AE +  + VTVS    AQ++ ILV   +LP  +HC DG  + G+V+  LR+LQ W   A+ +EF RF+      ++  +++A+F EE+ V    P+WLW G R   HPT+ V HQP LE+
Sbjct:    5 APALIPPFRFSTVQQGLYRGAYPTLKNFRFLRRLGLKTVVSVIPEPPTSDLADFCASEKIALHHFYAEKFTSDNVTVSPATAAQIIEILVQNKKLPLYIHCLDGSNVTGIVVMILRKLQNWTKLATVSEFCRFTRDHGIEKDESEYLAAFSEEIVVTADAPQWLWNGVRVTKHPTMIV-HQPDLEL 189          
BLAST of mRNA_S-firma_M_contig922.20166.1 vs. uniprot
Match: A0A662X7W3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X7W3_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.140e-39
Identity = 82/186 (44.09%), Postives = 111/186 (59.68%), Query Frame = 1
Query:  121 AVMITPPFRFGAVEADVFRSAQPTLKNYRFLSRLKLRTVVSIAPEGPMEDEAMFCREHAAQLVPIRAELYREEAVTVSSQQVAQVLAILVDKNRLPALVHCPDGRVLCGVVLWCLRRLQCWDDRASAAEFARFSGALPPREVE-KFVASFGEEVTVPQSVPRWLWGGDRAHWHPTIRVRHQPPLEV 675
            A  + PPFRF  V+  ++R + PTLKN+RFL RL L+TVVS+ PE P  D   FC +    L    AE +  + VTVS    AQ+L I+V +  LP  VHC DG  + G+V+  LR+LQ W   A+ +EF RF+      + E +++A+F EE+ V    PRWLW G R   HPT+ V HQP LE+
Sbjct:    5 APALIPPFRFSTVQQGLYRGSYPTLKNFRFLRRLALKTVVSVIPEPPTTDLTGFCAQEKIALHHFYAEKFTSDNVTVSPATAAQILEIIVQQKNLPLYVHCLDGANVTGIVVMVLRKLQNWTKLATVSEFCRFTRDHGVEKDESEYLAAFSEEIVVTADAPRWLWNGVRITKHPTMIV-HQPDLEL 189          
BLAST of mRNA_S-firma_M_contig922.20166.1 vs. uniprot
Match: W2N4G1_PHYPR (Uncharacterized protein n=13 Tax=Peronosporaceae TaxID=4777 RepID=W2N4G1_PHYPR)

HSP 1 Score: 155 bits (391), Expect = 1.500e-39
Identity = 80/186 (43.01%), Postives = 111/186 (59.68%), Query Frame = 1
Query:  121 AVMITPPFRFGAVEADVFRSAQPTLKNYRFLSRLKLRTVVSIAPEGPMEDEAMFCREHAAQLVPIRAELYREEAVTVSSQQVAQVLAILVDKNRLPALVHCPDGRVLCGVVLWCLRRLQCWDDRASAAEFARFSGALP-PREVEKFVASFGEEVTVPQSVPRWLWGGDRAHWHPTIRVRHQPPLEV 675
            A  + PPFRF  V+  ++R A PTLKN+RFL RL L+T+VS+ PE P  D A FC       +   AE +  + VTVS    AQ++ ILV K  LP  +HC DG  + G+V+  LR+LQ W   A+ +EF RF+      ++  +++A+F EE+ V    P+WLW G R   HPT+ V HQP LE+
Sbjct:    5 APALIPPFRFSTVQQGLYRGAYPTLKNFRFLRRLGLKTLVSVIPEPPTSDLADFCANEKITQLHFYAEKFTSDNVTVSPATAAQIVEILVQKKNLPLYIHCLDGSNVTGIVVMILRKLQNWTKLATVSEFCRFTRDHGIEKDESEYLAAFSEEIVVTADAPQWLWNGVRVTKHPTMIV-HQPDLEL 189          
BLAST of mRNA_S-firma_M_contig922.20166.1 vs. uniprot
Match: A0A0P1AVY4_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AVY4_PLAHL)

HSP 1 Score: 154 bits (388), Expect = 3.990e-39
Identity = 80/184 (43.48%), Postives = 110/184 (59.78%), Query Frame = 1
Query:  130 ITPPFRFGAVEADVFRSAQPTLKNYRFLSRLKLRTVVSIAPEGPMEDEAMFCREHAAQLVPIRAELYREEAVTVSSQQVAQVLAILVDKNRLPALVHCPDGRVLCGVVLWCLRRLQCWDDRASAAEFARFSG--ALPPREVEKFVASFGEEVTVPQSVPRWLWGGDRAHWHPTIRVRHQPPLEV 675
            + PPFRF  ++  ++R A PTLKN+RFL RL L+T+VS+ PE P  D   FC      L+   AE +  + VTVS   VAQ++ IL+ K  LP  +HC DG  + G+V+  LR+LQ W   A+ +EF RF+   A+   E E ++ +F EEV V    P WLW G R   HPT+ V HQP L++
Sbjct:    8 LIPPFRFSTMQHGLYRGAYPTLKNFRFLRRLGLKTMVSVIPEPPTSDLVAFCTSERITLLHFYAEKFTSDNVTVSPATVAQIIEILIQKKNLPLYIHCLDGANVTGIVVMILRKLQHWTKLATVSEFCRFTRDHAIEKNESE-YLTTFSEEVVVTADAPLWLWNGMRLTKHPTMIV-HQPDLDL 189          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig922.20166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIT7_ECTSI2.570e-13683.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCL7_9PHAE2.290e-13076.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CAP9_9STRA1.010e-5446.96Tyrosine phosphatase family-domain-containing prot... [more]
A0A024G700_9STRA5.440e-4344.94Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A8K1FLW5_PYTOL3.780e-4141.53Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CE66_PYTIN2.850e-4040.98Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
H3HBF1_PHYRM5.630e-4043.55Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A662X7W3_9STRA1.140e-3944.09Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
W2N4G1_PHYPR1.500e-3943.01Uncharacterized protein n=13 Tax=Peronosporaceae T... [more]
A0A0P1AVY4_PLAHL3.990e-3943.48Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig922contigS-firma_M_contig922:9754..16416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score409.1
Seed ortholog evalue2.3e-111
Seed eggNOG ortholog2880.D7FIT7
Preferred nameOCA6
KEGG koko:K18046
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.protein tyrosine phosphatase activity
EggNOG OGsCOG2365@1,KOG1572@2759
EC3.1.3.48
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein-tyrosine phosphatase-like
Ec32 orthologEc-20_002960.1
Exons9
Model size1732
Cds size1152
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828749.3526905-UTR-S-firma_M_contig922:9753..98791622828749.3526905-UTR-S-firma_M_contig922:9753..9879Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig922 9754..9879 +
1697105139.159579-UTR-S-firma_M_contig922:9753..98791697105139.159579-UTR-S-firma_M_contig922:9753..9879Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig922 9754..9879 +
1622828749.4861877-UTR-S-firma_M_contig922:15962..164161622828749.4861877-UTR-S-firma_M_contig922:15962..16416Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig922 15963..16416 +
1697105139.2902231-UTR-S-firma_M_contig922:15962..164161697105139.2902231-UTR-S-firma_M_contig922:15962..16416Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig922 15963..16416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828749.3666704-CDS-S-firma_M_contig922:9879..99711622828749.3666704-CDS-S-firma_M_contig922:9879..9971Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig922 9880..9971 +
1697105139.1800876-CDS-S-firma_M_contig922:9879..99711697105139.1800876-CDS-S-firma_M_contig922:9879..9971Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig922 9880..9971 +
1622828749.3791704-CDS-S-firma_M_contig922:11212..113661622828749.3791704-CDS-S-firma_M_contig922:11212..11366Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig922 11213..11366 +
1697105139.1925495-CDS-S-firma_M_contig922:11212..113661697105139.1925495-CDS-S-firma_M_contig922:11212..11366Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig922 11213..11366 +
1622828749.3967743-CDS-S-firma_M_contig922:12339..125101622828749.3967743-CDS-S-firma_M_contig922:12339..12510Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig922 12340..12510 +
1697105139.205369-CDS-S-firma_M_contig922:12339..125101697105139.205369-CDS-S-firma_M_contig922:12339..12510Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig922 12340..12510 +
1622828749.4097245-CDS-S-firma_M_contig922:13075..131851622828749.4097245-CDS-S-firma_M_contig922:13075..13185Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig922 13076..13185 +
1697105139.2178738-CDS-S-firma_M_contig922:13075..131851697105139.2178738-CDS-S-firma_M_contig922:13075..13185Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig922 13076..13185 +
1622828749.4215884-CDS-S-firma_M_contig922:13675..137831622828749.4215884-CDS-S-firma_M_contig922:13675..13783Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig922 13676..13783 +
1697105139.2271428-CDS-S-firma_M_contig922:13675..137831697105139.2271428-CDS-S-firma_M_contig922:13675..13783Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig922 13676..13783 +
1622828749.4340181-CDS-S-firma_M_contig922:14137..143171622828749.4340181-CDS-S-firma_M_contig922:14137..14317Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig922 14138..14317 +
1697105139.2382321-CDS-S-firma_M_contig922:14137..143171697105139.2382321-CDS-S-firma_M_contig922:14137..14317Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig922 14138..14317 +
1622828749.4474611-CDS-S-firma_M_contig922:14643..147221622828749.4474611-CDS-S-firma_M_contig922:14643..14722Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig922 14644..14722 +
1697105139.2516222-CDS-S-firma_M_contig922:14643..147221697105139.2516222-CDS-S-firma_M_contig922:14643..14722Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig922 14644..14722 +
1622828749.4621792-CDS-S-firma_M_contig922:15386..154491622828749.4621792-CDS-S-firma_M_contig922:15386..15449Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig922 15387..15449 +
1697105139.2650268-CDS-S-firma_M_contig922:15386..154491697105139.2650268-CDS-S-firma_M_contig922:15386..15449Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig922 15387..15449 +
1622828749.4742885-CDS-S-firma_M_contig922:15767..159621622828749.4742885-CDS-S-firma_M_contig922:15767..15962Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig922 15768..15962 +
1697105139.2766333-CDS-S-firma_M_contig922:15767..159621697105139.2766333-CDS-S-firma_M_contig922:15767..15962Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig922 15768..15962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig922.20166.1prot_S-firma_M_contig922.20166.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig922 9880..15962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig922.20166.1

>prot_S-firma_M_contig922.20166.1 ID=prot_S-firma_M_contig922.20166.1|Name=mRNA_S-firma_M_contig922.20166.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=384bp
MITPPFRFGAVEADVFRSAQPTLKNYRFLSRLKLRTVVSIAPEGPMEDEA
MFCREHAAQLVPIRAELYREEAVTVSSQQVAQVLAILVDKNRLPALVHCP
DGRVLCGVVLWCLRRLQCWDDRASAAEFARFSGALPPREVEKFVASFGEE
VTVPQSVPRWLWGGDRAHWHPTIRVRHQPPLEVFEPDPIPPHQTLRCVRV
RRGVNKCTLRPKGEVHTRTDYLRMRRGHMHAHNKVPGVIGADGLGGGGGV
GGRGQGASSAAGSSGAVSSSARRRPSAHHGQTASSALSGQDSFSQSIQDV
SIGMLMEEEEGPKLSRAVQALSLEGLDGTSYDDEEDTVYEHHHHHHHHHH
QPQHRHSSRVSASHNSRIRRGGGGIGSMGGSHS*
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mRNA from alignment at S-firma_M_contig922:9754..16416+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig922.20166.1 ID=mRNA_S-firma_M_contig922.20166.1|Name=mRNA_S-firma_M_contig922.20166.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=6663bp|location=Sequence derived from alignment at S-firma_M_contig922:9754..16416+ (Sphaerotrichia firma Sfir_13m male)
CTTGGCAATATCGTTGGGGAGTAGGCGGACACAAGCGGGCAAAAAGGCCT ACATCGTCAGGATTGCCTCAGCCTATACTAGCAGAGAGAGGAGAGAGGGC GAAAGAGGGCGAAAAAGAAAGCGGTCATGATTACGCCGCCTTTTCGGTTC GGAGCGGTCGAGGCAGATGTGTTCCGGTCCGCGCAGCCGACGCTCAAGAA CTATCGCTTCCTCTCCAGGTGAGGAAGTACAATGTCTGCACCAGTCTCTG TCGGTATGTTGTTGTTTGCGTCTCGTCTAGACGTCTAGACTACTGATTCC CTATTCTGTATACAGAAAGTTTGAAGCCTGAGCTGGTTTCACAAATTTGA ACTTTTGAATGGATCCACAGCGACGGCACATGATATCATGCGTCGGCGTC GGTTCTGATCTGGTACAGGCTATGTGTAGTCTACGTGTACCTGCTGTTAG AGTTGCATTTTTCATCTCGGCACGTTGGGTTCCCATTTGGTTCAGCCATT AATCAAGGTAACGGGAAGATTTATCCGAACACCCCCCCTGATTTACGGGT GGACTACAGCAGAGAAGAGGCTACCTTCGAGACTACCTGGTACTTGGGTA CAGCAGACTTGCAACCGCCCTCTCTCATTTTGCATATTTTGGAGAATGCA CGTTCCCTCATCTGCAAAACAGCAACACAGAGCTCCGAGTGGTCTCTTTC CTGCGCACAGACTGAGCTAGAGAGGATGCAAGACAGATATTAAATGGCTC CTCGAAGCTACAGCAGTAGTAGGGGCAGGACAACAGCATCAAGTTCGGAG AGGCAGGCGGAGGTTGCGGTCCAAAAACGATTTGGGGTCATGCGAATGGA ATTGACGATCCCGAGCACCTTTGCCGTTGACCATCTCTTACGCCTCAAGC TCGACAAGCGCTGCGTGAAAGATGTGCTGGAACAACCACGAAGTCGTCAG TTCGTGTCAGCGTGACAGACAAGGCGTGGTTTTTTTAAGGTTCATGGACA CACAGCAGCAGGCCGTTTTTCTTCTCCATATTTACAAAGGTTGGGACTGC TGTTGCAAACCACCGATTGCTACCAAGCGGTCAGACAATGTTTGACTCCG AATCCCGTTTGCCACCGCCGTTCCATCCCATTCGCTGACACCGGCTGTGC ATACATGCGACGCTCGTCGATCCAACCCTACCCCTTCTCCATGCCTCTCG GGCGCGATTTCCACCACCGCAAAGGAGCACAAAAATTCGAAAAACGACTC CGCCGCCACCGCGTAGTATGTCTAAACCCTCTTGCGGATCGATGTTGGAT AGAATATTCTGTAGAATGAAGAAGCTGCCTTGTTTAGCTGAGTCACAAGC GAACGAACTACCGTGGAGTTAGTCTACAACTACGGCAATATTTTCATGGC GAATTCTCTCTGCGCAGGAAACACGCCCATGCACAATTGCGCACTTTCCT TGCCCGCAGGTTAAAGCTTCGCACGGTGGTGTCCATTGCCCCGGAAGGGC CGATGGAGGACGAGGCGATGTTCTGCAGGGAGCACGCGGCACAACTCGTG CCGATTCGCGCGGAGCTGTACCGTGAGGAGGCGGTGACGGTTTCGTCCCA GCAGGTGGCGCAGGTGCAATCTGAATGGGGAGGGATTGTTGTGAGTGGGT TCGCCGGCTACCTTTTTGGGCTCCTTAGGATGGTGTTTTCTTGTGTCTTT GTTTGCTTGGCGGCAGGCACCGCATGCGCGGTAGGTGGGGGTTTGGTGAT GTGTTGTGTTGTTGTATCCCACGCTTTCTGCCGCCCCCCTGTGAGAATAC ATTGCGCCCCCCGACTGCTGCTGCTGCTGCTGCTGCTGCGGCTGCTGCCG TCGCCGCCGCCGCCGTTCGCATTTAGGAAAGCGAATGACGTCAGGATGTA TATATTTTTAGCAGTGTAGTCCGCCTCACCATCTTCGACACGAACACGTC GAACGTCAAATCTGCGGCACAAAGTACTTTCACATTTTCATGTTGGTGGC GACCCAAATGCATCTGACGCGCGCGCCCACACGAATGAGAACGAGAACGA GAATACAGCGATCGATCGATTCGACCAACGGTTTCGTTTCGTTCCGCTTC GTTTCGTTTCGTGGGTCGTGCAGCGCGGTGCTATCGTACCTGCTGTTGTC CTTCGCTTAAGCTGTGGTTGTTGCCGCTCAAGCGGCAGAGTCAGAATGCG CAGAATGTGTTTTAGCCCGTATTGTACTGGTCCGCAGCAGCAGCAGCAGC GACAGCGGCAACGGCGACAACGACAACGAATGATGTGTTGTCGTATTTGT ATCGTGCCCCAACAGCAGCACTTGCACCGCTGAGGAAAACGTGGCTTCTT CCTCCATCCATCCAAGGACAGCAGAGCTTGCCCCCGTAAATATTCAAAAC ACTTCTCATGTATGTACCCGCCCGCGCTTCCCGTCTACCACGTCGTTCGA CCCCTTTTTTTGTGACCCGTGACTGGCTGGCTGTCGCTAAAAAAAAACGG TCTTCTCTCTTTTTTTTCTCCTCTTCTCTCTTCGCGTGTTTCTCTCGGCA AACCGTATCTATACCCCCCGGGGGTGGGCGAGAAAGGTGCTGGCTATCCT CGTGGACAAGAATCGCCTGCCCGCGCTCGTCCACTGTCCCGACGGCCGGG TGCTGTGCGGGGTCGTGCTCTGGTGCCTCAGGCGGCTGCAGTGCTGGGAC GACCGGGCGTCGGCGGCGGAGTTTGCAAGGTTTTCCGGCGCTCTGCCTCC GCGAGAGGTACGTAGGTGGTGGTGAAATGTTTGTACATCGATGCCCTGTA TGTTTGCGTTGCACTAGACTAAAAAGTACATTGGGGAAGGGTGTTCTTGT ATGATGGTGGCGTTTGATTGGGGGTAATGCGGCGACAGAACTTGTTCTCT GTTTTTGGTGAGATTGGTTGTGAGACATTGACCCTCGTTTTTGAGGGGTT TTTTTGGCGTTGCTTGAGGTGCGCATGCGTGCATGCGCGATGAAAAGTTG CTGCCAATTTCGCGTTTTGTCTTCTGATCGGCCGTTTTTGGCAGAGATGC GGCTCGTTCGCTGCAAGTTTAGCCATAATACAGTGGATCCTAATTATTGA GAAAATAACATTTTAGCTTGAGAAAATAAAGTGTACACCACCGTCGCACA AAACACCGAATGATTTATTTCGCGGCGAACTAGAATCGACCCGTTGCTGT CACTGCTATGCTCCACATCATCACTGAGAGTGATCAGCAGGTAGTTGGCA TCAGCAGGTATTATGCCAGAATGCAAGCTGAACCCGCGCGCTGTCTTTCC CGTATTTTTTTGGCTTGCTCAGGTTGAAAAGTTCGTGGCGAGTTTTGGGG AAGAGGTCACCGTCCCACAGAGCGTGCCACGATGGCTGTGGGGGGGAGAC AGAGCACACTGGCATCCCACCATCCGAGTCCGGTGCGATGAAAACTAGAC AGCTGTTGCGTACTGCTGTCGGCGCACGGAGCACACAACGTGCACACATC GTTTTCCTGCGTCGATCAGGTGGCTTTCCCTCCGCCGCTCTTCTCTCTTC TTTTTTGTTGTATTTCTTTGTAGTATCATCGACGTGAGCAGTCTACGTCC AACCTTTGACAAAATAACAGTGTATTTTCCGACCGGGACTGTTGTAGACA TGTAACCCTCCCTCACCGTCCCCCGGCTAAATACAACGGCAAAGTTGTTC AATTTTTTTCTACAAAACGTCAGTGGTATTCGCCCGACCTGTGAACAACT CGTTCCAGGGGGACTAATGTTGTACACCAATACACAACCGCCCCAGACAA CAAGCACGAAAGAGGCAATCCGTACAATTGAGTTAAAGAGTTTTGGGGGT CTTGTGGGCGCTTTTTTCGTTTGTTTGCGGCGACTGATTTTTTCCTCGCC GTCCGTCTCTCGCCTCGACCAGGCATCAGCCACCGCTTGAGGTGTTCGAG CCGGACCCAATCCCTCCCCACCAAACTCTCAGGTGCGTTCGTGTGCGGCG TGGTGTGAATAAATGCACTCTGCGTCCGAAGTTATACAGTACATATGCGA CTTCGTTGCTCTTTTGAACTTGAAGTTTGTTTTGCCTGGCCTCAGGTAAT TTAGCTGCTTGCTTTTGGTTCATTCTGTCGCGGAATCCAGTCGCTGCTGC TGCTGCTGCTGCTGCTGCTGTAGTCGCGGCCGTGGGGGTCTCGCTCCCTC TTCTTCTTGTGTTTTGCCCTTTGCCAAGATGCCGGCGCAGAAGCGGGGCC TGCCACCCCACCCGCATCTCACGAGGACACCGATGCCGGTTTCTTTCAAT TTTCTTCTTGTTCTTGGGCTGGCTCAAAACATTTTCCTTCCATCGCGGTG TATGTATGTGTGTGTCACTTCTCACGAAAAAAAGGGGCGAAGTCCACACA AGAACAGACTACCTTAGGATGCGCAGGGGCCACATGCACGCCCACAACAA GGTCCCCGGGGTGATCGGCGCGGACGGGCTGGGTGGAGGCGGAGGCGTCG GCGGCCGGGGACAGGGGGCTTCTTCGGCCGCGGGCAGCTCCGGGGCCGTC TCCTCCTCGGCGAGGTGAGTGTGTATGATCGCTAATTATTTCTGCGATTT AAGTCTTCGCCGTTTTCTTTGGCTCGGCATTGGGGGACGAGTCAACAAGC GTGTCATGACCTTCTTTTTCCTGGCGACGGATGAAGGGTTTCGTCCAGCG TATTTTGTTTCGGCCAAGCCAAGGGTTTCCGTTGGCTGAGCCAATGTCTC GCCCCAAAGATCCGTTGGTTCTCTCTCCCTCACACACACACACTCTCCCG GTTCGGTCTAACTTTTTTCGTTTTTGTGTTTCCTTGCTTCCGGCTCGCTC GCGGGGGGACCGCAACGCGGGGCGGGCGGGGGGGGTACAGAAGAAGACCT TCGGCTCATCACGGCCAGACAGCCTCAAGCGCATTGTCTGGTCAGGACAG CTTCAGCCAAAGCATTCAGGCGAGCACAGCACAGCACGTGCCTCGGCTTG GCTTGTTTTGGTTTGATTTGGACCAATGTGTAGGTGTATTTAAATTCTTT GTCGTGGCGCGACTGGCCTATCGCTTGTGGAACACGCACACGAATTTCTC GAGCAAAGGTGGAAGATGGAAAATGAGGCAAGGAAGCCTGGGCTTTTTGT TCCGTGGAATATTGAGGAAATACCATTTTGCGACCTAACCGTTTGTAAAT ATGCCTAACTTTTCCCTTGAACTATCCCCTGAGGTGCGACAGGCATGGAT CACACGCTTTCCCTCTCTGTATGATACTACTACTGCTGCGATCAGCTTTT CCCTACCCACCAAGGCGAAAGCGAAAGCCCGGGGGGATACGGGGATACTT TAGTCCAAGTTGAGGCACAGCAGTATTAACATTATTGATCACGCAACGAA TCGAACGGCACGATTTTGGACACAGCACATTCGGGCACGGGTGGGCAACC GTGCTGGATTTCGGTGTTTTTTTTTTTACAACGTTGAGGATCCTGATGAC ACCATCGCTTTGAAATGGTTGGTACTCTCCGTGCGGCGAGTGTTCGATGG CCGAAGTCCGCTTCCTTTGACAGCGAGTACATGTGCGTTTTCCGTTCTTT CTCTTTCGACACTTGACACCAAATGCGGCGCAGGACGTGAGTATCGGCAT GCTCATGGAGGAGGAGGAGGGGCCCAAGCTGTCCAGAGCGGTGCAGGTAA GGGGCGGGCTCTCACGAGATGCGTAACCTTCCAGCCATGACGTGTGTATC GACGGCGAGAACAGCGACCGTCGTACGTGTAGACGCGAACAACAAAGCAC GCAGCCGTTCGCCCTCCTTCGAGTTCCTCACCTCCCTCATGCAGCGAGCG GCAGATGCCTGTAGTCTACGTACCGGGTGGTTTCTCCGCCGACACCGTTT TTCGCTTTTCGTGTCGTTTCCGGGACTCACCTTTTCGTGGCTTGTGTTTT CGTATTTGTCGTCACCCCACAAATGCAACAACGACAACAACGACGACCAC AACAACAACAACAGGCGTTGTCCCTCGAAGGTCTAGACGGGACTTCCTAC GACGACGAAGAAGACACGGTCTACGAGCACCACCATCATCACCACCACCA CCACCACCAGCCGCAGCACCGACACTCGTCTAGGGTCAGCGCCAGCCACA ACAGCCGAATCCGCAGGGGGGGGGGCGGGATTGGCAGCATGGGGGGAAGC CATTCGTGAAGGCTAAATTAGCCTGTGATCGCAATGGAGTCATGAAGGGT TGGGCCACCCAAGGACTGTGATGTAATTTATCACACACCCTCTGTTTGGT CTTTGCTGGGGTTTCGTCAAAGTAAAGCAAGCACGGAGGTGAATCGAGGA CCAATTTTAGGCACCAGTTGCCCTGAAATAAAATGCACTTAAGCACGTTT TTATTCTCCTTTTCCGTCGAGTTTTAGACAACGGGGTCGGCAATGCAATT TGACATCGTAACTCGGACGGAAACGGTGGTGTCGTTGATTTGCACGATGT AAAGTGAAGCGGGCGCGTGACTCCGCCGCTATTTACAGTAGCTGTTCCGG GCAGTATTTGGCAGGATGCTCATAGGATTGATTCCATTCGATTGCTCAAC ACGAGGCACTCGTGAAACAAGTTTTGCCTGAAAAAGAGCGGGCCGTCGGC AACAAGAAGCAGT
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Coding sequence (CDS) from alignment at S-firma_M_contig922:9754..16416+

>mRNA_S-firma_M_contig922.20166.1 ID=mRNA_S-firma_M_contig922.20166.1|Name=mRNA_S-firma_M_contig922.20166.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=2304bp|location=Sequence derived from alignment at S-firma_M_contig922:9754..16416+ (Sphaerotrichia firma Sfir_13m male)
ATGATTACGCCGCCTTTTCGGTTCGGAGCGGTCGAGGCAGATGTGTTCCG
GTCCGCGCAGCCGACGCTCAAGAACTATCGCTTCCTCTCCAGATGATTAC
GCCGCCTTTTCGGTTCGGAGCGGTCGAGGCAGATGTGTTCCGGTCCGCGC
AGCCGACGCTCAAGAACTATCGCTTCCTCTCCAGGTTAAAGCTTCGCACG
GTGGTGTCCATTGCCCCGGAAGGGCCGATGGAGGACGAGGCGATGTTCTG
CAGGGAGCACGCGGCACAACTCGTGCCGATTCGCGCGGAGCTGTACCGTG
AGGAGGCGGTGACGGTTTCGTCCCAGCAGGTGGCGCAGGTTAAAGCTTCG
CACGGTGGTGTCCATTGCCCCGGAAGGGCCGATGGAGGACGAGGCGATGT
TCTGCAGGGAGCACGCGGCACAACTCGTGCCGATTCGCGCGGAGCTGTAC
CGTGAGGAGGCGGTGACGGTTTCGTCCCAGCAGGTGGCGCAGGTGCTGGC
TATCCTCGTGGACAAGAATCGCCTGCCCGCGCTCGTCCACTGTCCCGACG
GCCGGGTGCTGTGCGGGGTCGTGCTCTGGTGCCTCAGGCGGCTGCAGTGC
TGGGACGACCGGGCGTCGGCGGCGGAGTTTGCAAGGTTTTCCGGCGCTCT
GCCTCCGCGAGAGGTGCTGGCTATCCTCGTGGACAAGAATCGCCTGCCCG
CGCTCGTCCACTGTCCCGACGGCCGGGTGCTGTGCGGGGTCGTGCTCTGG
TGCCTCAGGCGGCTGCAGTGCTGGGACGACCGGGCGTCGGCGGCGGAGTT
TGCAAGGTTTTCCGGCGCTCTGCCTCCGCGAGAGGTTGAAAAGTTCGTGG
CGAGTTTTGGGGAAGAGGTCACCGTCCCACAGAGCGTGCCACGATGGCTG
TGGGGGGGAGACAGAGCACACTGGCATCCCACCATCCGAGTCCGGTTGAA
AAGTTCGTGGCGAGTTTTGGGGAAGAGGTCACCGTCCCACAGAGCGTGCC
ACGATGGCTGTGGGGGGGAGACAGAGCACACTGGCATCCCACCATCCGAG
TCCGGCATCAGCCACCGCTTGAGGTGTTCGAGCCGGACCCAATCCCTCCC
CACCAAACTCTCAGGTGCGTTCGTGTGCGGCGTGGTGTGAATAAATGCAC
TCTGCGTCCGAAGCATCAGCCACCGCTTGAGGTGTTCGAGCCGGACCCAA
TCCCTCCCCACCAAACTCTCAGGTGCGTTCGTGTGCGGCGTGGTGTGAAT
AAATGCACTCTGCGTCCGAAGGGCGAAGTCCACACAAGAACAGACTACCT
TAGGATGCGCAGGGGCCACATGCACGCCCACAACAAGGTCCCCGGGGTGA
TCGGCGCGGACGGGCTGGGTGGAGGCGGAGGCGTCGGCGGCCGGGGACAG
GGGGCTTCTTCGGCCGCGGGCAGCTCCGGGGCCGTCTCCTCCTCGGCGAG
GGGCGAAGTCCACACAAGAACAGACTACCTTAGGATGCGCAGGGGCCACA
TGCACGCCCACAACAAGGTCCCCGGGGTGATCGGCGCGGACGGGCTGGGT
GGAGGCGGAGGCGTCGGCGGCCGGGGACAGGGGGCTTCTTCGGCCGCGGG
CAGCTCCGGGGCCGTCTCCTCCTCGGCGAGAAGAAGACCTTCGGCTCATC
ACGGCCAGACAGCCTCAAGCGCATTGTCTGGTCAGGACAGCTTCAGCCAA
AGCATTCAGAAGAAGACCTTCGGCTCATCACGGCCAGACAGCCTCAAGCG
CATTGTCTGGTCAGGACAGCTTCAGCCAAAGCATTCAGGACGTGAGTATC
GGCATGCTCATGGAGGAGGAGGAGGGGCCCAAGCTGTCCAGAGCGGTGCA
GGACGTGAGTATCGGCATGCTCATGGAGGAGGAGGAGGGGCCCAAGCTGT
CCAGAGCGGTGCAGGCGTTGTCCCTCGAAGGTCTAGACGGGACTTCCTAC
GACGACGAAGAAGACACGGTCTACGAGCACCACCATCATCACCACCACCA
CCACCACCAGCCGCAGCACCGACACTCGTCTAGGGTCAGCGCCAGCCACA
ACAGCCGAATCCGCAGGGGGGGGGGCGGGATTGGCAGCATGGGGGGAAGC
CATTCGTGAGCGTTGTCCCTCGAAGGTCTAGACGGGACTTCCTACGACGA
CGAAGAAGACACGGTCTACGAGCACCACCATCATCACCACCACCACCACC
ACCAGCCGCAGCACCGACACTCGTCTAGGGTCAGCGCCAGCCACAACAGC
CGAATCCGCAGGGGGGGGGGCGGGATTGGCAGCATGGGGGGAAGCCATTC
GTGA
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