mRNA_S-firma_M_contig9219.20164.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9219.20164.1
Unique NamemRNA_S-firma_M_contig9219.20164.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9219.20164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9219contigS-firma_M_contig9219:570..1216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size250
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828749.1290731-CDS-S-firma_M_contig9219:569..7361622828749.1290731-CDS-S-firma_M_contig9219:569..736Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9219 570..736 -
1697105139.0372908-CDS-S-firma_M_contig9219:569..7361697105139.0372908-CDS-S-firma_M_contig9219:569..736Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9219 570..736 -
1622828749.1445553-CDS-S-firma_M_contig9219:1134..12161622828749.1445553-CDS-S-firma_M_contig9219:1134..1216Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9219 1135..1216 -
1697105139.0485528-CDS-S-firma_M_contig9219:1134..12161697105139.0485528-CDS-S-firma_M_contig9219:1134..1216Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9219 1135..1216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9219.20164.1prot_S-firma_M_contig9219.20164.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9219 570..1216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9219.20164.1

>prot_S-firma_M_contig9219.20164.1 ID=prot_S-firma_M_contig9219.20164.1|Name=mRNA_S-firma_M_contig9219.20164.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=83bp
NFVGWRQSIPTSCSAPSAAEESHGITAGTRRRVRRKPQASISPCCPRPRR
QVKLRKGHARSPLARLYLGSSFSAGCLCARSR*
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mRNA from alignment at S-firma_M_contig9219:570..1216-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9219.20164.1 ID=mRNA_S-firma_M_contig9219.20164.1|Name=mRNA_S-firma_M_contig9219.20164.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=647bp|location=Sequence derived from alignment at S-firma_M_contig9219:570..1216- (Sphaerotrichia firma Sfir_13m male)
AACTTTGTGGGCTGGAGGCAGAGCATTCCAACCAGCTGCTCCGCTCCCTC
GGCAGCAGAAGAATCGCACGGCATCACCGCAGGTAGATCTACAGAGTACC
AGTAGATATCAGTCTTGATTCAACTGCTCCTTGGGGTCATGAGCAAAATG
TACGTAGGTTTGCCTCCACCGCCGCCTTCTTGTCCCGCCCGGGTTGTCAA
GACGAAGGAGGGCCATAGTACAGACCAAGCTGCCTCTACTGCAATGCAGA
CTCGTCAACACGAGAGCTTGTCCTTCTTTGGTGGAAGAGGACGCGGATCA
ACAACCTTAATAACACGTTCACACACCAAACGTTTCAACGTTTCTCTCAT
CTGCTCTGTACGCACGCACGCGGATCTTTCATTCTACCAACAGTACACAT
TGAAAAAAGTGACGTGTCCTGCTTGTCGTCCAACCAGGGTGGGAGACACT
CACGAGAACTGCCCTTTATTTACTACATAGGTACCCGCAGGCGTGTACGT
AGGAAGCCACAAGCGTCGATCTCGCCTTGCTGCCCGAGACCGCGACGTCA
AGTCAAGTTGCGAAAGGGACACGCGCGCTCGCCGCTGGCTAGACTGTATC
TTGGTTCCTCGTTTTCCGCTGGCTGCCTCTGTGCACGGTCAAGGTAA
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Coding sequence (CDS) from alignment at S-firma_M_contig9219:570..1216-

>mRNA_S-firma_M_contig9219.20164.1 ID=mRNA_S-firma_M_contig9219.20164.1|Name=mRNA_S-firma_M_contig9219.20164.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=498bp|location=Sequence derived from alignment at S-firma_M_contig9219:570..1216- (Sphaerotrichia firma Sfir_13m male)
AACTTTGTGGGCTGGAGGCAGAGCATTCCAACCAGCTGCTCCGCTCCCTC
GGCAGCAGAAGAATCGCACGGCATCACCGCAGAACTTTGTGGGCTGGAGG
CAGAGCATTCCAACCAGCTGCTCCGCTCCCTCGGCAGCAGAAGAATCGCA
CGGCATCACCGCAGGTACCCGCAGGCGTGTACGTAGGAAGCCACAAGCGT
CGATCTCGCCTTGCTGCCCGAGACCGCGACGTCAAGTCAAGTTGCGAAAG
GGACACGCGCGCTCGCCGCTGGCTAGACTGTATCTTGGTTCCTCGTTTTC
CGCTGGCTGCCTCTGTGCACGGTCAAGGTAAGTACCCGCAGGCGTGTACG
TAGGAAGCCACAAGCGTCGATCTCGCCTTGCTGCCCGAGACCGCGACGTC
AAGTCAAGTTGCGAAAGGGACACGCGCGCTCGCCGCTGGCTAGACTGTAT
CTTGGTTCCTCGTTTTCCGCTGGCTGCCTCTGTGCACGGTCAAGGTAA
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