mRNA_S-firma_M_contig9206.20157.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9206.20157.1
Unique NamemRNA_S-firma_M_contig9206.20157.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9206.20157.1 vs. uniprot
Match: D7FZD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD7_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 3.590e-36
Identity = 64/121 (52.89%), Postives = 83/121 (68.60%), Query Frame = 1 
Query:  250 ESEEGTGYGGSLYHLIDECARRLEIRNISCVKG----EYRLPFMESGDLPCGFQTRMTKGTVEDLASRFNFHFVGDSTIRRLAESFVSIVTGEGSHHDVYHEERDLSRGSLQVTFHWAPFC 600
            +S  G+ Y G L+ L+ +CA RL++   +C K     ++R+P M SGDLPCGF+TR+   T EDLASR+  HF+GDST RRL ESF+SI TG  S H  YHE R+L+   LQV FHWAP+C
Sbjct:   54 DSSHGSEYRGGLHDLVRQCAERLDLPGYTCEKNSSSADFRIPLMGSGDLPCGFETRLPTSTFEDLASRYAIHFMGDSTSRRLVESFISIATGNRSAHVYYHESRNLTVDGLQVNFHWAPYC 174
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BLAST of mRNA_S-firma_M_contig9206.20157.1 vs. uniprot
Match: D7G0T6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T6_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 3.360e-34
Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:  292 LIDECARRLEIRNISC-------VKGEYRLPFMESGDLPCGFQTRMTKGTVEDLASRFNFHFVGDSTIRRLAESFVSIVTGEGSHHDVYHEERDLSRGSLQVTFHWAPFCLG 606
            L+ +CARRL++    C       V+ +YRLP MESG LPCGF+ R     +ED+AS+F FHF+GDSTIRRL ESFVSI TG+GS HD+ H + D S G+L+  F+WAPFC G
Sbjct:   87 LVHDCARRLKVAGDLCGHSETPVVEDDYRLPHMESGVLPCGFEERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHDMVHSDLDFSTGNLETRFYWAPFCFG 198
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BLAST of mRNA_S-firma_M_contig9206.20157.1 vs. uniprot
Match: D7FUL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL3_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 3.500e-30
Identity = 61/121 (50.41%), Postives = 79/121 (65.29%), Query Frame = 1 
Query:  250 ESEEGTGYGGSLYHLIDECARRLEIRNISC----VKGEYRLPFMESGDLPCGFQTRMTKGTVEDLASRFNFHFVGDSTIRRLAESFVSIVTGEGSHHDVYHEERDLSRGSLQVTFHWAPFC 600
            +  E  G  G ++ L+ +CAR+L +    C    +  +YR+P MESGD  CGF+TRM    + DLAS++ F F+GDST RRLAESFVSIV+G  S H V H   D+SRG L+VTF WAP C
Sbjct:  190 DGNESAGQPGGVHRLVSDCARQLVLPGFGCDEPVLADQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCC 310
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BLAST of mRNA_S-firma_M_contig9206.20157.1 vs. uniprot
Match: A0A6H5JGU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU9_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 5.980e-29
Identity = 63/138 (45.65%), Postives = 86/138 (62.32%), Query Frame = 1 
Query:  250 ESEEGTGYGGSLYHLIDECARRLEIRNISC----VKGEYRLPFMESGDLPCGFQTRMTKGTVEDLASRFNFHFVGDSTIRRLAESFVSIVTGEGSHHDVYHEERDLSRGSLQVTFHWAPFCLGRGEHPSLSTPFEDAM 651
            + +E  G  G ++ L+ +CAR+L +   SC    ++ +YR+P MESG+  CGF+T M    + DLA ++ F F+GDST RRLAESFVSIV+G  S H V H   D+SRG L+VTF WAP C   G    +S    DA+
Sbjct:  218 DGDEAAGQPGGVHRLVSDCARQLMLPGFSCDEPVLQDQYRVPLMESGNASCGFETLMPDEKLLDLALKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDG---GISAAVRDAL 352
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BLAST of mRNA_S-firma_M_contig9206.20157.1 vs. uniprot
Match: A0A6H5L6U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U4_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.090e-28
Identity = 62/127 (48.82%), Postives = 80/127 (62.99%), Query Frame = 1 
Query:  292 LIDECARRLEIRNISCVKGE-------YRLPFMESGDLPCGFQTRMTKGTVEDLASRFNFHFVGDSTIRRLAESFVSIVTGEGSHHDVYHEERDLSRGSLQVTFHWAPFCLGRGEHPSLSTPFEDAM 651
            L+  CA RLE+    C KGE       YRL  M SG LPCGF+ R+ K  +ED+AS+++FHF+GDST RRL ESFVSI TG GS H V   + + S G+L+V F+WAP C G     ++ T   DA+
Sbjct:   72 LVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKEAMEDIASKYSFHFIGDSTSRRLGESFVSIFTGRGSTHPVVQRDINFSSGNLKVHFYWAPLCSGPESVGAMLTTVMDAV 198
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BLAST of mRNA_S-firma_M_contig9206.20157.1 vs. uniprot
Match: A0A6H5JFC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC3_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.570e-20
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:  409 TKGTVEDLASRFNFHFVGDSTIRRLAESFVSIVTGEGSHHDVYHEERDLSRGSLQVTFHWAPFCL 603
            T GT+EDL+SR+ FHFVGDST RRLAESFVSI+TG+ S H V HE  D+S GSL+V FHWAP C+
Sbjct:   75 TLGTLEDLSSRYVFHFVGDSTTRRLAESFVSILTGQASPHFVVHERIDMSSGSLKVIFHWAPMCI 139
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BLAST of mRNA_S-firma_M_contig9206.20157.1 vs. uniprot
Match: D7G0V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V6_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 4.110e-17
Identity = 47/111 (42.34%), Postives = 60/111 (54.05%), Query Frame = 1 
Query:  274 GGSLYHLIDECARRLEIRNISCVKGEYRLPFMESGDLPCGFQTRMTKGTVEDLASRFNFHFVGDSTIRRLAESFVSIVTGEGSHHDVYHEERDLSRGSLQVTFHWAPFCLG 606
            GG   H+ D   RRL                      PC  Q R+ K  +E +AS+++FH +GDST RRL ESFVSI TG GS H +   +RD S G+L+V F+WAP C G
Sbjct:   58 GGGRQHVDDAGVRRLHPAG------------------PCVSQERLGKDAMEYIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHRIAQRDRDFSSGNLKVHFYWAPLCSG 150
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9206.20157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FZD7_ECTSI3.590e-3652.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0T6_ECTSI3.360e-3455.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FUL3_ECTSI3.500e-3050.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGU9_9PHAE5.980e-2945.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6U4_9PHAE2.090e-2848.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFC3_9PHAE1.570e-2069.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0V6_ECTSI4.110e-1742.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9206contigS-firma_M_contig9206:127..2926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size686
Cds size684
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9206.20157.1prot_S-firma_M_contig9206.20157.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9206 129..2926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828748.1606505-CDS-S-firma_M_contig9206:128..2391622828748.1606505-CDS-S-firma_M_contig9206:128..239Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9206 129..239 -
1697105138.4241707-CDS-S-firma_M_contig9206:128..2391697105138.4241707-CDS-S-firma_M_contig9206:128..239Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9206 129..239 -
1622828748.1797998-CDS-S-firma_M_contig9206:932..11061622828748.1797998-CDS-S-firma_M_contig9206:932..1106Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9206 933..1106 -
1697105138.4391236-CDS-S-firma_M_contig9206:932..11061697105138.4391236-CDS-S-firma_M_contig9206:932..1106Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9206 933..1106 -
1622828748.1935291-CDS-S-firma_M_contig9206:2527..29261622828748.1935291-CDS-S-firma_M_contig9206:2527..2926Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9206 2528..2926 -
1697105138.4483674-CDS-S-firma_M_contig9206:2527..29261697105138.4483674-CDS-S-firma_M_contig9206:2527..2926Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9206 2528..2926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9206.20157.1

>prot_S-firma_M_contig9206.20157.1 ID=prot_S-firma_M_contig9206.20157.1|Name=mRNA_S-firma_M_contig9206.20157.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=228bp
RQRYFLHVGVCPTCAMRFSSTWMLVFAAFYGAETSEAGEPSVKFEVIEDS
FPVVDWGDLPEHASELDSGDTVLERFRDGEVLGESEEGTGYGGSLYHLID
ECARRLEIRNISCVKGEYRLPFMESGDLPCGFQTRMTKGTVEDLASRFNF
HFVGDSTIRRLAESFVSIVTGEGSHHDVYHEERDLSRGSLQVTFHWAPFC
LGRGEHPSLSTPFEDAMSKLEKEDEPDG
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mRNA from alignment at S-firma_M_contig9206:127..2926-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9206.20157.1 ID=mRNA_S-firma_M_contig9206.20157.1|Name=mRNA_S-firma_M_contig9206.20157.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2800bp|location=Sequence derived from alignment at S-firma_M_contig9206:127..2926- (Sphaerotrichia firma Sfir_13m male)
CGACAACGCTACTTCCTCCACGTTGGGGTCTGTCCTACATGCGCAATGCG
TTTCAGCAGCACCTGGATGCTGGTTTTTGCTGCTTTCTACGGCGCCGAGA
CGAGTGAGGCAGGCGAACCGTCCGTGAAATTCGAAGTTATCGAGGACAGC
TTTCCAGTTGTGGACTGGGGCGATTTGCCCGAGCACGCGTCCGAACTAGA
CTCTGGCGACACAGTGCTAGAGCGTTTCAGAGATGGGGAAGTGTTAGGCG
AGTCAGAGGAGGGTACAGGCTACGGAGGGAGCTTGTACCACCTGATAGAC
GAGTGCGCGCGGCGGCTGGAGATTCGCAACATCTCCTGCGTTAAAGGAGA
ATACAGACTACCGTTCATGGAATCGGGGGACCTGCCATGCGGGTTTCAGG
TGCGCTGAGGGCTAGCCTACGTTGGATGTTTTGTTCATTTTTGTTTCTCA
TGCTACTGTAGTCTACGTTCCAAAAGCACCATGGGAGCCCGTGGTCACAA
ACCTGGGCACAATCGTCGCCGCAAAGACACTCAGCAAAAATATTATGGTA
TGTACGTACAGTAGACACCCCCTTGCGATACCAAATTATCTCTCGGAAGG
GTCTTGAGTTTCGCTGGCGCTAAATCAAGAGGTATAGGATACGCACCACT
CGGAAAAGATAAAACAAAACATGCAGAAAAACTAAACCAACCAAACCAAA
AGAGGGTCAGGCACTGCACCAGCGAAGCGGAGATGACAACGACAAGCCGG
AGGCTTCCCACTCCCGCCTACAATGCCGGAGGATTCCGTGGCGGGTATGA
ACAGCTCTAGAACAAAATCAATTGCCCATTGTGTTCAAGGTTGAACCGAA
GAGTGGTCCAGGTAAAATACCGTTAGTTCTACGTGTTCCGCGCTTGAATT
CAGCACAATATGGATGCGTTGTACGACCGTAAATCCTGATCTGGCGCAAC
GAGTCTGGCTGTCCCGACTACCCTTTTGTTGAGGAGGAGTGTCTTGACTT
TTTTCCGGTCTCTGTTGTGTTGGCTGGTTCGCACGATGTGCTTCATCTTT
TCCTCGAACCAAAACCGGACCAGATTGCGAGACAACTGCCCGATTTGAAA
GGGTTTGAACACACAAATTTCTCCAGATAGAAAGCTACCGGGCATCGCTG
CTGCTGTGCTCCGACTATGTTTCTCCAAGGCTCAGTATAAGAAGTGCTCA
GCCGAAGACCGCGTCCCCGAAGACCCCGAGCGCTCCATGGCCGACCTTCG
CCACTCACTGCGTACGCACCCCATACAAGCGGACGGCGAGTTTTGCAGAC
ACACGAACATGTTTTTTCTCGATGCACGTTTGGCTTTGCCAGTTCGCCAG
ATCAAGTATTGCTCTCTGCATCCGTTCATCTGCATTTGTCGGAGGGCAAA
CGAAAAAATAAAAGTAAGCGCTCTGTTTCGCTAGCAACAGTTCTAGCTAC
TTCTAGCTACCCCGGGACGGCCAACTTCAAGGAATGACTGAGAAATTTGT
GAAGTCATTCTTGGTTCCAAGCGGAAACATCCATTTTCCGGTGGAGAGGG
GCAGATGGAGAGAAGTCTACAACTTTCTGTGGTAGATGCAGCCAGGTGTC
GGTTAAGGCCCTCTCCTGTGACATCTCCCCCCGATTTTCCGGGATTTCAA
ACGTCGGAAAAAATTAAAAAACGTATCCGTGGGTGAAGCCAATAAACACG
CGGGCAACGTGGTGCACCCTCAAGGTGAATTCTACTTGGCCCCAGGGAGC
CTGAAATCATTTTCCCAGTATGTTACCAACCTCCAATGGGGAAAATCTTC
GCCAACTGTTCGAACTACAGACTCGAATGACGAAAGGGACTGTGGAGGAC
CTCGCTTCTAGATTCAATTTCCATTTCGTCGGTGATAGCACCATTCGCCG
ACTCGCGGAAAGCTTCGTGTCGATCGTGACTGGAGAAGGCTCGCACCATG
ACGTGTATCACGAGGAGAGAGATTTGTCCAGAGGGAGCTTGCAGGTGCGC
AAATTTGGGGGCTTTTTTCGGGGGCTCACGAGGTATGCGTGCTCGTCTAC
CTCGTGTCAGCCTATCCGACGCACGATGAATACCGCGACATATGATTCGC
TCAACCAAATTCGGAGATCGTGGACTCGGTGTATTCCTAGGGTAGATGAT
ATAATTTGTTGACGACAGTGGGACGAGAGGTCTCGCCGTGCCATTGCTTT
TAAAATCAAAACCGCCCGCAACTGTCCATTTGAGTCTCCGGAAGACTCCA
CAATCTTTTGGCCATTCGTTTAGGGATCTGGAAGCGTTTGCCGCCGTCGT
GAATATCACGAATAGGCACCTGTGTCGTCAACCAAACAATATGCTGATTT
TCAGCTCGTAATATTGGCTTCGAACCCTGTGTTAAATTTGAGGGTTTCCT
GTCGTGTTGGCGCACGCTGCCCACCTACACACACAGTACCCTTCTCTCCG
TTTCGTGAAGGTGTTCGTGTTCAGTCTTTTCCCACAGAAAAGCGATGGTC
AGCCAAAACAAGCAGCGTATATCCCGACATGTGGTGTGCATGAAAACTGG
GTCTATGCCCTCTCAGTCCTTCACCCAAGCACTCAAGTCCTATCCACCGA
AACAACCATGAGTCTACAAGCGGAACGAGATATCATAGCACCCCTTCCAT
TCACGACCCTACGCATGTACCCTTGAACTTGAAACAGGTGACGTTTCATT
GGGCACCCTTCTGCCTCGGAAGGGGGGAACATCCCAGTCTCAGCACGCCT
TTCGAGGATGCCATGTCCAAACTGGAGAAAGAAGATGAACCCGATGGTGG
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Coding sequence (CDS) from alignment at S-firma_M_contig9206:127..2926-

>mRNA_S-firma_M_contig9206.20157.1 ID=mRNA_S-firma_M_contig9206.20157.1|Name=mRNA_S-firma_M_contig9206.20157.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1368bp|location=Sequence derived from alignment at S-firma_M_contig9206:127..2926- (Sphaerotrichia firma Sfir_13m male)
CGACAACGCTACTTCCTCCACGTTGGGGTCTGTCCTACATGCGCAATGCG
TTTCAGCAGCACCTGGATGCTGGTTTTTGCTGCTTTCTACGGCGCCGAGA
CGAGTGAGGCAGGCGAACCGTCCGTGAAATTCGAAGTTATCGAGGACAGC
TTTCCAGTTGTGGACTGGGGCGATTTGCCCGAGCACGCGTCCGAACTAGA
CTCTGGCGACACAGTGCTAGAGCGTTTCAGAGATGGGGAAGTGTTAGGCG
AGTCAGAGGAGGGTACAGGCTACGGAGGGAGCTTGTACCACCTGATAGAC
GAGTGCGCGCGGCGGCTGGAGATTCGCAACATCTCCTGCGTTAAAGGAGA
ATACAGACTACCGTTCATGGAATCGGGGGACCTGCCATGCGGGTTTCAGC
GACAACGCTACTTCCTCCACGTTGGGGTCTGTCCTACATGCGCAATGCGT
TTCAGCAGCACCTGGATGCTGGTTTTTGCTGCTTTCTACGGCGCCGAGAC
GAGTGAGGCAGGCGAACCGTCCGTGAAATTCGAAGTTATCGAGGACAGCT
TTCCAGTTGTGGACTGGGGCGATTTGCCCGAGCACGCGTCCGAACTAGAC
TCTGGCGACACAGTGCTAGAGCGTTTCAGAGATGGGGAAGTGTTAGGCGA
GTCAGAGGAGGGTACAGGCTACGGAGGGAGCTTGTACCACCTGATAGACG
AGTGCGCGCGGCGGCTGGAGATTCGCAACATCTCCTGCGTTAAAGGAGAA
TACAGACTACCGTTCATGGAATCGGGGGACCTGCCATGCGGGTTTCAGAC
TCGAATGACGAAAGGGACTGTGGAGGACCTCGCTTCTAGATTCAATTTCC
ATTTCGTCGGTGATAGCACCATTCGCCGACTCGCGGAAAGCTTCGTGTCG
ATCGTGACTGGAGAAGGCTCGCACCATGACGTGTATCACGAGGAGAGAGA
TTTGTCCAGAGGGAGCTTGCAGACTCGAATGACGAAAGGGACTGTGGAGG
ACCTCGCTTCTAGATTCAATTTCCATTTCGTCGGTGATAGCACCATTCGC
CGACTCGCGGAAAGCTTCGTGTCGATCGTGACTGGAGAAGGCTCGCACCA
TGACGTGTATCACGAGGAGAGAGATTTGTCCAGAGGGAGCTTGCAGGTGA
CGTTTCATTGGGCACCCTTCTGCCTCGGAAGGGGGGAACATCCCAGTCTC
AGCACGCCTTTCGAGGATGCCATGTCCAAACTGGAGAAAGAAGATGAACC
CGATGGTGTGACGTTTCATTGGGCACCCTTCTGCCTCGGAAGGGGGGAAC
ATCCCAGTCTCAGCACGCCTTTCGAGGATGCCATGTCCAAACTGGAGAAA
GAAGATGAACCCGATGGT
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