mRNA_S-firma_M_contig9203.20155.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: D8LR70_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR70_ECTSI) HSP 1 Score: 403 bits (1036), Expect = 3.510e-137 Identity = 239/269 (88.85%), Postives = 243/269 (90.33%), Query Frame = 1
Query: 1 GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSSADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXX-------------GAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILGVSKWGGTGGEKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDH-FLGEGTEER 765
GLEV D VCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSS DMDVR+EAGENLALLHESRIILGLVG G + XXXXXXXXXXXXXXXXX GAAEMEAMDLTVLWEEVVEE+KGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALR+CLQSGFQTQMQSNELLREILGVSKWGGTGGEKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDH FLGEG EER
Sbjct: 209 GLEVTDKVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSSPDMDVRIEAGENLALLHESRIILGLVGGGEGGSADWSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEMKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRSCLQSGFQTQMQSNELLREILGVSKWGGTGGEKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDHIFLGEGAEER 477
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: A0A835YVX4_9STRA (Interferon-related developmental regulator-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVX4_9STRA) HSP 1 Score: 138 bits (348), Expect = 1.700e-34 Identity = 93/250 (37.20%), Postives = 132/250 (52.80%), Query Frame = 1
Query: 1 GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSS-ADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPE-EVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILGVSKWGGTGGEKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDHFL 744
G EV D V AAAL GW LLAT R W+ + L R+LL+ A +DVR AGE AL+ A AA E D+ LW+E+ + ++G+ T++SK++S++TKK QRRTFR L A + E PP + +SLQ+ ++ + WA + +L ALRACL G Q+Q N +R+ILG GG G P +K+ RK ++ +R+R R S+Q A+D FL
Sbjct: 236 GTEVTDDVAAAALRGWCLLATAGPREWLGGPALEALLPAVRDLLAGGASLDVREAAGEAAALMXXXXXXXXXXQAEAGIEE---------------------AAAEEYSDVETLWQEIGDLMQGYSTETSKRMSKDTKKSQRRTFRDLHAAVVEGAPPPWQELSLQSCAVEITTWAELVRLEALRACLHGGLQSQAAHNATVRDILGAVDGGGAAGGTPALAKSGGARKYRSETRSRQRASRQNAKDSFL 464
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: A0A7S2XZE4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZE4_9STRA) HSP 1 Score: 130 bits (327), Expect = 1.440e-31 Identity = 87/251 (34.66%), Postives = 137/251 (54.58%), Query Frame = 1
Query: 1 GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSSADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILGV---SKWGGTGGEKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDHFL 744
G+ V D V AALS WGLLATT++ +V + LR L DM VRM AGEN AL+HE + + V + A G AE+ W+E++ ++ +SSK++S++ +K+ R TFR+++A+I E++ P E + + G++ + WAHI Q++ALR ++ GFQ Q+Q N +LREILG + + Y+K+S+ +K +TT RT+ R ++Q +D FL
Sbjct: 213 GVMVTDEVIPAALSCWGLLATTLTTEFVHQTAGPRVLRTLLAFLEHGDMSVRMAAGENAALIHECK--MKKVHELEALAEEKQLDEAEAEELIHQADDEQGIAEV--------WDEIIARMEDLRGESSKRISKKNRKEVRATFREIYASIVEDDNPSEQLQVVGGTIRLNTWAHIVQVDALRNTMRGGFQIQLQVNPILREILGECFQNDGVSMVDRRANYAKSSDWQKYKTTERTKQRKARQNQRDVFL 453
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: A0A7S2XRI7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XRI7_9STRA) HSP 1 Score: 108 bits (271), Expect = 6.330e-24 Identity = 79/257 (30.74%), Postives = 125/257 (48.64%), Query Frame = 1
Query: 1 GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQH-----LRVFRELLSSADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILG----VSKWGGTGGEKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDHFL 744
G P ++ A AL W LL+TT+ + +A L + ++ L+ +D+R AGE +AL+HESR+ LG+V DG + + + V+ +EV + + +S +S++ KK+QR TFR+ ATI +E P E VS++ GS+T+ W + QLN +R CLQ GFQ + N LR + G VS ++ SK S+ K + TR R ++ ++HFL
Sbjct: 152 GDVTPATLRATALDCWALLSTTLHDATLAGNSEGVGRGVVLLPLLQQCLNHTSVDLRSAAGECVALIHESRLNLGIVEDGNESTPTNTTERRFRR------------GSWDGSEWEVMMDEVKQRVAELSNESGHHMSKKAKKEQRATFREFMATIVNDEAPHEEVSVRGGSITLRSWRQVIQLNFIRHCLQGGFQNHLMFNSTLRIMFGITFTVSDRNSQLEKRLLLSKTSDAAKLADKNLTRQRRTRTNVKNHFL 396
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: A0A7S0PVU5_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PVU5_9STRA) HSP 1 Score: 107 bits (268), Expect = 2.090e-23 Identity = 74/252 (29.37%), Postives = 126/252 (50.00%), Query Frame = 1
Query: 28 AAALSGWGLLATTVSRSWVA------TRMTKQHLRVFRELLSSADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILGVS-KWGGTGG------EKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDHFL 744
A AL W LL+TT+ +++A T Q L + L +++R AGE +AL+HESR+ LG+ + A + + V+ +EV + + +S + +S++ KK+QR TFR+ ATI ++EPP+EV++ + G+L + W + QLN +R CLQ GFQ Q+ +N+ L I G + G ++ +SK S+ K + T++R ++ ++HFL
Sbjct: 182 ATALDCWALLSTTIHDAFIAGDDDFQTGRGLQILPLLSNCLDHTSVELRSAAGECVALIHESRLKLGVEKEDCDNASDRRYRR----------------GSWDGSEWEVIMDEVKQRVAELSVESGRHMSKKAKKEQRATFREFMATIVDDEPPKEVITFRGGTLELNSWKEVVQLNFIRHCLQGGFQIQLLTNDTLHAIFGADGRMLGNAQTLSQLEKRMIFSKTSDAAKAADQNMTKNRRNRNNVKNHFL 417
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: A0A7S1YWK5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YWK5_9STRA) HSP 1 Score: 106 bits (264), Expect = 2.450e-23 Identity = 79/264 (29.92%), Postives = 131/264 (49.62%), Query Frame = 1
Query: 1 GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQHLR-------VFRELLSSADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILGVSKW---GGTGG------EKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDHFL 744
G +V + A AL W LL++TV+ +++A ++ L + L+S++M++R AGE +AL+HESR+ LG+ D A + + VL +EV + + +S + +S++ KK+QR TFR ATI ++EPP EVV+ + G++T+ W I ++N +R CLQ GFQ Q+ +NE L I + TG ++ SK SE K TR R ++ +++F+
Sbjct: 80 GEDVSPCLRAIALDCWALLSSTVADAYLAGDEMEEDLGRGLVILPLLSTCLNSSNMELRCAAGECVALIHESRLNLGIDEDEGENASERRFRR----------------GSWDGSEWEVLMDEVKQRVAELSVESGRHMSKKAKKEQRATFRDFMATIVDDEPPVEVVNFRGGTVTLRTWREIIEINFVRHCLQGGFQIQLMTNETLHMIFDIDASTINDATGAALSQLEKRLTMSKTSEAAKAADLDMTRRRRTRTNVKNYFI 327
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: B8CFC4_THAPS (IFRD domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFC4_THAPS) HSP 1 Score: 107 bits (267), Expect = 5.250e-23 Identity = 81/261 (31.03%), Postives = 128/261 (49.04%), Query Frame = 1
Query: 1 GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELL---------SSADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILGV---SKWGGTGGEKPFY-SKNSEVRKQQTTSRTRSRHSKQEAQDHFL 744
G +V + A AL W LL+TT+ + +A + + + R LL S D+ +R AGE +A++HESR+ LG+ A A + + +L +E+ + + +S +S+++KK+QR TFR TI ++E PEEVV+ + G L + W I QLN +R CLQSGFQ Q+ +NE L ++ G S G + EK Y SK S K + T+ R ++ ++HF+
Sbjct: 251 GEKVSPLLRATALDCWALLSTTLHDAHIAAGDAEDTVALGRGLLLLPLLANCLESNDVGLRSSAGELVAMIHESRLNLGMDEGEAENATERRFRR----------------GSWDGSEWEILMDEIKQRVAELSVESGHHMSKKSKKEQRATFRDFMNTIVDDESPEEVVNFRGGKLRITSWKEIIQLNFVRHCLQSGFQIQLMTNETLHDVFGAVFSSAAGLSQLEKRMYMSKTSAKSKAVDRAMTKQRRTRTNVKNHFI 495
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: A0A7S2H1J3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H1J3_9STRA) HSP 1 Score: 105 bits (263), Expect = 1.830e-22 Identity = 78/267 (29.21%), Postives = 128/267 (47.94%), Query Frame = 1
Query: 1 GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQH----------LRVFRELLSSADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILGVSKWGGTGGE---------KPFYSKNSEVRKQQTTSRTRSRHSKQEAQDHFL 744
G +V ++ A AL W LL+TTV +++A L + + L+ +++++R AGE +AL+HESR+ LG+ D A + + VL +EV + + +S + +S++ KK+QR TFR ATI ++EPP EVV+ + G+L + W I Q+N +R CLQ GFQ Q+ +NE L + + E + SK S+V K TR R ++ A+++F+
Sbjct: 244 GEDVCPTLRAIALDCWALLSTTVDDAYIAGDELGSETGENGRGVVILPLLSQCLNESNVELRCAAGECVALIHESRLNLGIDDDEGENASERRFRR----------------GSWDGSEWEVLMDEVKQRVAELSVESGRHMSKKAKKEQRATFRDFMATIVDDEPPVEVVNFRGGTLNLKSWREIVQINFVRHCLQGGFQIQLMTNETLHMVFNIDAAIINDAEGASLSQLEKRLIMSKTSDVAKAADRDLTRRRRNRTNAKNYFI 494
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: A0A4D9DHN1_9STRA (IFRD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DHN1_9STRA) HSP 1 Score: 102 bits (255), Expect = 1.060e-21 Identity = 74/252 (29.37%), Postives = 121/252 (48.02%), Query Frame = 1
Query: 1 GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSSADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILGVSKWG-GTGGEKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDHFLGEG 753
G + + AA + W LL T R + L F LL ++ D+R+ AGE +ALL E GL A E E +D +V+ ++ + SK++SR+ KK QR +FR++ + + + + PEEV+S + S + W +KQ+ ALR CLQ GF T + N ++ +I + E+ +KNSE+ + +TT+R+R+R S+++A+ HF EG
Sbjct: 175 GGRASEELKAAGVDAWSLLFTVAPRGYNTHESRALLLENFLPLLDASSADLRVAAGEAIALLREHWRQEGLA------------------------VHDVSADEEEVVD------SIVDRLQDMAREGSKRMSRKDKKAQRASFREICSAVVDGQHPEEVISYRTRSFRLTSWVKMKQVEALRDCLQGGFLTALAQNTVIHDIFDLDPTAFDVPVERSVVAKNSELGRWRTTTRSRNRRSREKAKHHFTEEG 396
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Match: K8YQM7_NANGC (Nadh:ubiquinone oxidoreductase complex i intermediate-associated protein 30 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQM7_NANGC) HSP 1 Score: 102 bits (255), Expect = 3.710e-21 Identity = 74/252 (29.37%), Postives = 121/252 (48.02%), Query Frame = 1
Query: 1 GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSSADMDVRMEAGENLALLHESRIILGLVGDGATAAXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRACLQSGFQTQMQSNELLREILGVSKWG-GTGGEKPFYSKNSEVRKQQTTSRTRSRHSKQEAQDHFLGEG 753
G + + AA + W LL T R + L F LL ++ D+R+ AGE +ALL E GL A E E +D +V+ ++ + SK++SR+ KK QR +FR++ + + + + PEEV+S + S + W +KQ+ ALR CLQ GF T + N ++ +I + E+ +KNSE+ + +TT+R+R+R S+++A+ HF EG
Sbjct: 790 GGRASEELKAAGVDAWSLLFTVAPRGYNTHESRALLLENFLPLLDASSADLRVAAGEAIALLREHWRQEGLA------------------------VHDVSADEEEVVD------SIVDRLQDMAREGSKRMSRKDKKAQRASFREICSAVVDGQRPEEVISYRTRSFRLTSWVKMKQVEALRDCLQGGFLTALAQNTVIHDIFDLDPTAFDVPVERSVVAKNSELGRWRTTTRSRNRRSREKAKHHFTEEG 1011 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9203.20155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig9203.20155.1 >prot_S-firma_M_contig9203.20155.1 ID=prot_S-firma_M_contig9203.20155.1|Name=mRNA_S-firma_M_contig9203.20155.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=256bp GLEVPDSVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSSADMDback to top mRNA from alignment at S-firma_M_contig9203:2469..4077- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig9203.20155.1 ID=mRNA_S-firma_M_contig9203.20155.1|Name=mRNA_S-firma_M_contig9203.20155.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1609bp|location=Sequence derived from alignment at S-firma_M_contig9203:2469..4077- (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig9203:2469..4077- >mRNA_S-firma_M_contig9203.20155.1 ID=mRNA_S-firma_M_contig9203.20155.1|Name=mRNA_S-firma_M_contig9203.20155.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1536bp|location=Sequence derived from alignment at S-firma_M_contig9203:2469..4077- (Sphaerotrichia firma Sfir_13m male)back to top |