mRNA_S-firma_M_contig920.20152.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig920.20152.1
Unique NamemRNA_S-firma_M_contig920.20152.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig920.20152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig920contigS-firma_M_contig920:11748..12041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size280
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828747.384893-CDS-S-firma_M_contig920:11749..118241622828747.384893-CDS-S-firma_M_contig920:11749..11824Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig920 11750..11824 -
1697105137.924903-CDS-S-firma_M_contig920:11749..118241697105137.924903-CDS-S-firma_M_contig920:11749..11824Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig920 11750..11824 -
1622828747.3979902-CDS-S-firma_M_contig920:11840..120411622828747.3979902-CDS-S-firma_M_contig920:11840..12041Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig920 11841..12041 -
1697105137.9415298-CDS-S-firma_M_contig920:11840..120411697105137.9415298-CDS-S-firma_M_contig920:11840..12041Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig920 11841..12041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig920.20152.1prot_S-firma_M_contig920.20152.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig920 11750..12041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig920.20152.1

>prot_S-firma_M_contig920.20152.1 ID=prot_S-firma_M_contig920.20152.1|Name=mRNA_S-firma_M_contig920.20152.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=92bp
QRRAVAVEGPPFRWRARLCITRGRKTRFPARNVGPFGCTGVSVMLSAAGR
PMRRKSCSLWLRSCLTRRHGRRLRNAILGTTRRAGRARCFVQ
back to top

mRNA from alignment at S-firma_M_contig920:11748..12041-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig920.20152.1 ID=mRNA_S-firma_M_contig920.20152.1|Name=mRNA_S-firma_M_contig920.20152.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=294bp|location=Sequence derived from alignment at S-firma_M_contig920:11748..12041- (Sphaerotrichia firma Sfir_13m male)
CAGCGGCGTGCAGTAGCCGTCGAAGGTCCACCTTTTCGCTGGCGCGCACG
TCTCTGCATTACTCGTGGACGAAAGACCCGTTTTCCCGCAAGGAACGTTG
GGCCGTTTGGGTGCACCGGGGTCAGCGTGATGCTTTCAGCGGCCGGCCGG
CCCATGCGTCGTAAATCCTGCTCTTTATGGCTTCGTTCGTGCCTCACTCG
TGCGACACATCGATGAGCGACACGGCCGCCGCCTCCGAAACGCTATCCTC
GGTACAACACGCCGCGCAGGCCGCGCCAGGTGTTTCGTTCAACA
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig920:11748..12041-

>mRNA_S-firma_M_contig920.20152.1 ID=mRNA_S-firma_M_contig920.20152.1|Name=mRNA_S-firma_M_contig920.20152.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=552bp|location=Sequence derived from alignment at S-firma_M_contig920:11748..12041- (Sphaerotrichia firma Sfir_13m male)
CAGCGGCGTGCAGTAGCCGTCGAAGGTCCACCTTTTCGCTGGCGCGCACG
TCTCTGCATTACTCGTGGACGAAAGACCCGTTTTCCCGCAAGGAACGTTG
GGCCGTTTGGGTGCACCGGGGTCAGCGTGATGCTTTCAGCGGCCGGCCGG
CCCATGCGTCGTAAATCCTGCTCTTTATGGCTTCGTTCGTGCCTCACTCG
TCAGCGGCGTGCAGTAGCCGTCGAAGGTCCACCTTTTCGCTGGCGCGCAC
GTCTCTGCATTACTCGTGGACGAAAGACCCGTTTTCCCGCAAGGAACGTT
GGGCCGTTTGGGTGCACCGGGGTCAGCGTGATGCTTTCAGCGGCCGGCCG
GCCCATGCGTCGTAAATCCTGCTCTTTATGGCTTCGTTCGTGCCTCACTC
GTCGACACGGCCGCCGCCTCCGAAACGCTATCCTCGGTACAACACGCCGC
GCAGGCCGCGCCAGGTGTTTCGTTCAACGACACGGCCGCCGCCTCCGAAA
CGCTATCCTCGGTACAACACGCCGCGCAGGCCGCGCCAGGTGTTTCGTTC
AA
back to top