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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 2499 |
| Cds size | 2481 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622828747.2947352-UTR-S-firma_M_contig920:5640..5658 | 1622828747.2947352-UTR-S-firma_M_contig920:5640..5658 | Sphaerotrichia firma Sfir_13m male | UTR | S-firma_M_contig920 5641..5658 + |
| 1697105137.87058-UTR-S-firma_M_contig920:5640..5658 | 1697105137.87058-UTR-S-firma_M_contig920:5640..5658 | Sphaerotrichia firma Sfir_13m male | UTR | S-firma_M_contig920 5641..5658 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622828747.3129864-CDS-S-firma_M_contig920:5658..5807 | 1622828747.3129864-CDS-S-firma_M_contig920:5658..5807 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig920 5659..5807 + |
| 1697105137.881182-CDS-S-firma_M_contig920:5658..5807 | 1697105137.881182-CDS-S-firma_M_contig920:5658..5807 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig920 5659..5807 + |
| 1622828747.332775-CDS-S-firma_M_contig920:6524..7657 | 1622828747.332775-CDS-S-firma_M_contig920:6524..7657 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig920 6525..7657 + |
| 1697105137.8971276-CDS-S-firma_M_contig920:6524..7657 | 1697105137.8971276-CDS-S-firma_M_contig920:6524..7657 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig920 6525..7657 + |
| 1622828747.3450634-CDS-S-firma_M_contig920:7846..9045 | 1622828747.3450634-CDS-S-firma_M_contig920:7846..9045 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig920 7847..9045 + |
| 1697105137.9073749-CDS-S-firma_M_contig920:7846..9045 | 1697105137.9073749-CDS-S-firma_M_contig920:7846..9045 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig920 7847..9045 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig920.20150.1 >prot_S-firma_M_contig920.20150.1 ID=prot_S-firma_M_contig920.20150.1|Name=mRNA_S-firma_M_contig920.20150.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=827bp
MTVDDLEMARGRRVGQEDAQERWKDLADLRDGRREKWMTDRAKHALGTPK LASIFLQEEKGRIHRLRKIKSVLASGKLMGSGPITSSSSTQPDRRGRRRP YPNSSQQYSHHHHHTNHRRFQQANDASLDAVQPNYPTNPFGNVDKEAIQF PAPMGRKRTSLEEDVRNGRKEATHPQATLHNQSSSNVPPGTVWDDDTRAI QEVVSVLAGSNAGLHGSRSDLGNREAPAATVSENNYRGHSSTDVNSERGQ SRHTPEASNRSRAGAGGSQAISSGPSAIDLFDQCGLVPVAAVEKEGLVGT TDTIRSSQRPLANSTDTGGRDPAPSVADNTLARYPVAPARVAPRPPLVPG GPSSTTNDSLGARNHPRDGGRHEARAARPKRAQPAATHGVKPRPPFAGGG SVSTVSRTTHAQQQAPSSSVKDAVVGPSKAPPPRSESSSASGPVSASLSA SEQRIASAKERLHKDKGLSALKSEHVEALSILQDISCPSTAAGVGEAGGS SETATEGNGGGAAEAARITLLRERKNSSANTTAGSPAVTAGLGGGVGQQG PPVDDKFDELSADLPRIGSKEQAALRTMYRKWWMKVANGGSPPSPCTPVG PVDDGIPPVARQHLPIQGGVSGGDMTGTAESSATTAAADVSGNVRSSDFT VSGTRQSGDRLPCPQKESASAATTDVEPPTDRGMAAAVAAMENSSSDTSS PTRPTGDLGCCSQENVESPAGTKGCPAEDGDATDKMPLQAETDAPKAARD TLASEQQQQQQQQQDISSDVESVSEDDGLEKEQEEGHHGRIYLPDGRFVA TWRNSSEEMADAVATYTNAEKVGGEDG back to topmRNA from alignment at S-firma_M_contig920:5641..9045+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_M_contig920.20150.1 ID=mRNA_S-firma_M_contig920.20150.1|Name=mRNA_S-firma_M_contig920.20150.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3405bp|location=Sequence derived from alignment at S-firma_M_contig920:5641..9045+ (Sphaerotrichia firma Sfir_13m male) CGCTGACAGGCCCGCGTGATGACCGTGGATGACTTGGAGATGGCTCGAGG
AAGGCGTGTTGGCCAAGAAGATGCTCAAGAGCGATGGAAGGATCTGGCGG
ATCTCAGGGACGGCCGTCGCGAAAAGTGGATGACGGATCGAGCGAAGCAC
GCGCTCGGCACACCAAAGTGAGAGGGTTTTCGCAGGCAGTCTACCTGTAG
GCACCGCCGTGAATCCGACTTTCTCATCGCGCTTCGTAGGCATTGGAGAT
CGTATGTACCATGTCTGAACAGACCCGAGCTCGGCCCCCTCAATGAAGAC
CTTGCAAGCAGAGGTTTCCCATGTAAAAAAAAACAACACCGGTTCGTTGC
ACGGGGACGAAGTACAACAATAGAGCTCAAAATTCGCGTTCTCTACTACA
AGTATGATTAAGTATAGTACCTGTGCATGTAATATGAACAGAAATAATAA
TCTGGGGTCAGACAACGAATGAGAAAGGGCTCGACCGGCAAGAAGGCTAG
CTGTATATGTATGATGTGACCGGGCGTACTGCTGTACCCCATCTCCAAAA
AAGGCAAATGTGTCCACGCCCCTCTAGCTTACTAGCTTCCTCCTCTCACT
GCTGCGGAGGGAAGTATGACTGCAGCGTAAAAAGACGCAGCGAAACGCAG
CCCTTGTAACAATATTTCACTTGATAACGAAAATGCATGTTCCGTGGCCG
TTGAATGAGCGTCAGCCTAGCAGTGATGTCATTTGGAGTTCATGCACGCT
CTAACAATTCAATATTGATGGATGCGCTACTATGAATACGTATCCACAGT
AGTTGTCGTTCCTTTCTGACAGCAAACACGCTATCCGCTACCCTTGTCAT
ATACTCGCGTGATGATCCGAACCCCTTTCGGTAGACTAGCCTCTATATTT
CTTCAAGAGGAGAAAGGGCGCATTCATCGGCTCCGCAAGATCAAGTCGGT
GCTGGCGTCGGGGAAGCTCATGGGTAGCGGACCAATCACGTCGTCTTCCT
CAACACAACCCGATCGGCGGGGGAGACGACGTCCATACCCAAATTCATCC
CAGCAATATAGCCACCATCATCACCACACGAACCATCGCAGATTCCAACA
GGCGAATGACGCGAGTCTCGATGCCGTTCAGCCAAACTACCCGACGAACC
CTTTCGGGAACGTCGACAAGGAGGCCATACAGTTTCCAGCGCCGATGGGG
AGAAAAAGAACCTCGCTCGAAGAGGACGTCAGAAACGGCAGGAAAGAGGC
AACGCATCCACAGGCGACTCTACACAACCAAAGCAGCAGCAATGTCCCTC
CGGGAACGGTGTGGGACGACGACACTCGAGCGATCCAAGAAGTCGTCTCC
GTTCTAGCGGGAAGCAACGCTGGCTTGCACGGATCTCGGAGTGATCTTGG
CAACCGAGAAGCCCCTGCGGCGACGGTTAGCGAGAACAACTACAGAGGCC
ACAGCAGCACCGACGTGAACAGCGAAAGAGGGCAATCACGACACACCCCG
GAGGCCTCAAACCGTAGCAGGGCGGGTGCAGGAGGGAGCCAGGCTATCAG
CTCGGGGCCATCAGCCATAGACCTGTTTGACCAGTGCGGCCTCGTCCCCG
TAGCGGCGGTTGAGAAGGAAGGCCTCGTGGGGACGACCGACACGATTCGA
TCAAGCCAGCGACCGCTAGCGAATAGCACGGACACCGGCGGGAGAGATCC
TGCGCCAAGCGTGGCCGATAACACCCTCGCGAGATACCCAGTCGCCCCCG
CGCGTGTGGCTCCCAGACCCCCGTTGGTCCCTGGCGGCCCATCGTCGACG
ACGAACGATTCATTGGGGGCGAGAAATCACCCAAGGGATGGCGGGCGCCA
CGAAGCACGAGCGGCGCGCCCAAAGCGAGCTCAACCCGCGGCAACCCACG
GAGTCAAGCCTCGGCCCCCCTTCGCCGGTGGTGGCAGTGTCTCCACCGTG
TCTCGAACCACGCATGCACAACAACAAGCTCCTTCGTCGTCGGTCAAGGA
CGCGGTGGTAGGCCCTTCGAAATTCAGCCGTAGCGCTGGCCGCGGTGTAC
CGAGCGGCGCCACCACAGCCGAGTCTTCGTCAAGGCGTTCTCGCAAGGAA
GGGGCGGCGAACCCCGATTCCCAGTCAGCTGCCCAAACCGAAAGCAGGAC
CAGGCGTCGTTGGAATGTCGGCGAGGCAACCCCAAGCGCTGCTACTGCTC
CGCTTCCGAAAGCGCCGCCTCCGCGGTCGGAATCGTCGTCGGCATCAGGG
CCGGTCTCAGCATCGCTGTCGGCGTCGGAACAGAGAATCGCAAGCGCGAA
AGAGCGGCTCCACAAGGACAAGGGCCTGAGCGCTCTCAAGTCGGAACACG
TCGAAGCTCTATCGATCCTGCAGGACATCAGCTGCCCTTCCACCGCGGCA
GGCGTGGGAGAAGCGGGCGGTAGCTCTGAAACGGCAACGGAGGGGAACGG
AGGCGGGGCCGCGGAAGCTGCTAGAATAACCCTCCTCCGCGAGAGAAAAA
ACAGCTCGGCAAATACGACGGCTGGTTCACCGGCAGTAACAGCAGGACTA
GGCGGCGGCGTGGGGCAACAAGGACCACCTGTCGATGACAAATTCGACGA
GCTCTCGGCCGACCTGCCCCGAATCGGGTCTAAGGAACAAGCGGCGCTGC
GAACGATGTACCGGAAGTGGTGGATGAAGGTTGCGAACGGTGGGAGTCCG
CCCTCGCCGTGCACACCGGTGGGCCCCGTGGATGACGGCATTCCGCCGGT
CGCCCGACAACATTTGCCGATCCAAGGAGGCGTGTCCGGGGGCGACATGA
CGGGGACGGCAGAATCCTCGGCCACCACAGCCGCCGCCGACGTTTCGGGC
AATGTTCGGTCATCCGATTTTACTGTTTCGGGAACACGCCAAAGCGGCGA
CCGACTACCGTGCCCCCAGAAGGAATCGGCCAGCGCGGCCACTACTGATG
TCGAGCCACCCACGGATCGAGGGATGGCAGCAGCGGTGGCGGCGATGGAG
AACAGTAGTAGTGATACCAGTAGTCCAACACGTCCGACCGGAGATTTGGG
TTGCTGTTCTCAGGAAAACGTCGAGTCACCTGCAGGAACGAAAGGGTGCC
CAGCAGAGGACGGGGACGCCACCGATAAAATGCCGCTCCAGGCTGAAACA
GATGCGCCGAAGGCCGCAAGGGATACGCTCGCTTCGGAGCAACAGCAGCA
ACAGCAGCAGCAGCAGGATATTTCGTCGGACGTTGAGTCGGTCTCGGAAG
ACGACGGCCTCGAGAAGGAGCAAGAGGAGGGGCACCACGGCCGCATCTAC
CTACCGGATGGGAGATTCGTTGCCACCTGGCGAAACAGCTCGGAGGAGAT
GGCAGATGCGGTTGCAACCTACACAAACGCTGAGAAAGTGGGTGGCGAGG
ATGGC back to topCoding sequence (CDS) from alignment at S-firma_M_contig920:5641..9045+ >mRNA_S-firma_M_contig920.20150.1 ID=mRNA_S-firma_M_contig920.20150.1|Name=mRNA_S-firma_M_contig920.20150.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=4962bp|location=Sequence derived from alignment at S-firma_M_contig920:5641..9045+ (Sphaerotrichia firma Sfir_13m male) ATGACCGTGGATGACTTGGAGATGGCTCGAGGAAGGCGTGTTGGCCAAGA AGATGCTCAAGAGCGATGGAAGGATCTGGCGGATCTCAGGGACGGCCGTC GCGAAAAGTGGATGACGGATCGAGCGAAGCACGCGCTCGGCACACCAAAA TGACCGTGGATGACTTGGAGATGGCTCGAGGAAGGCGTGTTGGCCAAGAA GATGCTCAAGAGCGATGGAAGGATCTGGCGGATCTCAGGGACGGCCGTCG CGAAAAGTGGATGACGGATCGAGCGAAGCACGCGCTCGGCACACCAAAAC TAGCCTCTATATTTCTTCAAGAGGAGAAAGGGCGCATTCATCGGCTCCGC AAGATCAAGTCGGTGCTGGCGTCGGGGAAGCTCATGGGTAGCGGACCAAT CACGTCGTCTTCCTCAACACAACCCGATCGGCGGGGGAGACGACGTCCAT ACCCAAATTCATCCCAGCAATATAGCCACCATCATCACCACACGAACCAT CGCAGATTCCAACAGGCGAATGACGCGAGTCTCGATGCCGTTCAGCCAAA CTACCCGACGAACCCTTTCGGGAACGTCGACAAGGAGGCCATACAGTTTC CAGCGCCGATGGGGAGAAAAAGAACCTCGCTCGAAGAGGACGTCAGAAAC GGCAGGAAAGAGGCAACGCATCCACAGGCGACTCTACACAACCAAAGCAG CAGCAATGTCCCTCCGGGAACGGTGTGGGACGACGACACTCGAGCGATCC AAGAAGTCGTCTCCGTTCTAGCGGGAAGCAACGCTGGCTTGCACGGATCT CGGAGTGATCTTGGCAACCGAGAAGCCCCTGCGGCGACGGTTAGCGAGAA CAACTACAGAGGCCACAGCAGCACCGACGTGAACAGCGAAAGAGGGCAAT CACGACACACCCCGGAGGCCTCAAACCGTAGCAGGGCGGGTGCAGGAGGG AGCCAGGCTATCAGCTCGGGGCCATCAGCCATAGACCTGTTTGACCAGTG CGGCCTCGTCCCCGTAGCGGCGGTTGAGAAGGAAGGCCTCGTGGGGACGA CCGACACGATTCGATCAAGCCAGCGACCGCTAGCGAATAGCACGGACACC GGCGGGAGAGATCCTGCGCCAAGCGTGGCCGATAACACCCTCGCGAGATA CCCAGTCGCCCCCGCGCGTGTGGCTCCCAGACCCCCGTTGGTCCCTGGCG GCCCATCGTCGACGACGAACGATTCATTGGGGGCGAGAAATCACCCAAGG GATGGCGGGCGCCACGAAGCACGAGCGGCGCGCCCAAAGCGAGCTCAACC CGCGGCAACCCACGGAGTCAAGCCTCGGCCCCCCTTCGCCGGTGGTGGCA GTGTCTCCACCGTGTCTCGAACCACGCATGCACAACAACAAGCTCCTTCG TCGTCGGTCAAGGACGCGGTGGTAGGCCCTTACTAGCCTCTATATTTCTT CAAGAGGAGAAAGGGCGCATTCATCGGCTCCGCAAGATCAAGTCGGTGCT GGCGTCGGGGAAGCTCATGGGTAGCGGACCAATCACGTCGTCTTCCTCAA CACAACCCGATCGGCGGGGGAGACGACGTCCATACCCAAATTCATCCCAG CAATATAGCCACCATCATCACCACACGAACCATCGCAGATTCCAACAGGC GAATGACGCGAGTCTCGATGCCGTTCAGCCAAACTACCCGACGAACCCTT TCGGGAACGTCGACAAGGAGGCCATACAGTTTCCAGCGCCGATGGGGAGA AAAAGAACCTCGCTCGAAGAGGACGTCAGAAACGGCAGGAAAGAGGCAAC GCATCCACAGGCGACTCTACACAACCAAAGCAGCAGCAATGTCCCTCCGG GAACGGTGTGGGACGACGACACTCGAGCGATCCAAGAAGTCGTCTCCGTT CTAGCGGGAAGCAACGCTGGCTTGCACGGATCTCGGAGTGATCTTGGCAA CCGAGAAGCCCCTGCGGCGACGGTTAGCGAGAACAACTACAGAGGCCACA GCAGCACCGACGTGAACAGCGAAAGAGGGCAATCACGACACACCCCGGAG GCCTCAAACCGTAGCAGGGCGGGTGCAGGAGGGAGCCAGGCTATCAGCTC GGGGCCATCAGCCATAGACCTGTTTGACCAGTGCGGCCTCGTCCCCGTAG CGGCGGTTGAGAAGGAAGGCCTCGTGGGGACGACCGACACGATTCGATCA AGCCAGCGACCGCTAGCGAATAGCACGGACACCGGCGGGAGAGATCCTGC GCCAAGCGTGGCCGATAACACCCTCGCGAGATACCCAGTCGCCCCCGCGC GTGTGGCTCCCAGACCCCCGTTGGTCCCTGGCGGCCCATCGTCGACGACG AACGATTCATTGGGGGCGAGAAATCACCCAAGGGATGGCGGGCGCCACGA AGCACGAGCGGCGCGCCCAAAGCGAGCTCAACCCGCGGCAACCCACGGAG TCAAGCCTCGGCCCCCCTTCGCCGGTGGTGGCAGTGTCTCCACCGTGTCT CGAACCACGCATGCACAACAACAAGCTCCTTCGTCGTCGGTCAAGGACGC GGTGGTAGGCCCTTCGAAAGCGCCGCCTCCGCGGTCGGAATCGTCGTCGG CATCAGGGCCGGTCTCAGCATCGCTGTCGGCGTCGGAACAGAGAATCGCA AGCGCGAAAGAGCGGCTCCACAAGGACAAGGGCCTGAGCGCTCTCAAGTC GGAACACGTCGAAGCTCTATCGATCCTGCAGGACATCAGCTGCCCTTCCA CCGCGGCAGGCGTGGGAGAAGCGGGCGGTAGCTCTGAAACGGCAACGGAG GGGAACGGAGGCGGGGCCGCGGAAGCTGCTAGAATAACCCTCCTCCGCGA GAGAAAAAACAGCTCGGCAAATACGACGGCTGGTTCACCGGCAGTAACAG CAGGACTAGGCGGCGGCGTGGGGCAACAAGGACCACCTGTCGATGACAAA TTCGACGAGCTCTCGGCCGACCTGCCCCGAATCGGGTCTAAGGAACAAGC GGCGCTGCGAACGATGTACCGGAAGTGGTGGATGAAGGTTGCGAACGGTG GGAGTCCGCCCTCGCCGTGCACACCGGTGGGCCCCGTGGATGACGGCATT CCGCCGGTCGCCCGACAACATTTGCCGATCCAAGGAGGCGTGTCCGGGGG CGACATGACGGGGACGGCAGAATCCTCGGCCACCACAGCCGCCGCCGACG TTTCGGGCAATGTTCGGTCATCCGATTTTACTGTTTCGGGAACACGCCAA AGCGGCGACCGACTACCGTGCCCCCAGAAGGAATCGGCCAGCGCGGCCAC TACTGATGTCGAGCCACCCACGGATCGAGGGATGGCAGCAGCGGTGGCGG CGATGGAGAACAGTAGTAGTGATACCAGTAGTCCAACACGTCCGACCGGA GATTTGGGTTGCTGTTCTCAGGAAAACGTCGAGTCACCTGCAGGAACGAA AGGGTGCCCAGCAGAGGACGGGGACGCCACCGATAAAATGCCGCTCCAGG CTGAAACAGATGCGCCGAAGGCCGCAAGGGATACGCTCGCTTCGGAGCAA CAGCAGCAACAGCAGCAGCAGCAGGATATTTCGTCGGACGTTGAGTCGGT CTCGGAAGACGACGGCCTCGAGAAGGAGCAAGAGGAGGGGCACCACGGCC GCATCTACCTACCGGATGGGAGATTCGTTGCCACCTGGCGAAACAGCTCG GAGGAGATGGCAGATGCGGTTGCAACCTACACAAACGCTGAGAAAGTGGG TGGCGAGGATGGCCGAAAGCGCCGCCTCCGCGGTCGGAATCGTCGTCGGC ATCAGGGCCGGTCTCAGCATCGCTGTCGGCGTCGGAACAGAGAATCGCAA GCGCGAAAGAGCGGCTCCACAAGGACAAGGGCCTGAGCGCTCTCAAGTCG GAACACGTCGAAGCTCTATCGATCCTGCAGGACATCAGCTGCCCTTCCAC CGCGGCAGGCGTGGGAGAAGCGGGCGGTAGCTCTGAAACGGCAACGGAGG GGAACGGAGGCGGGGCCGCGGAAGCTGCTAGAATAACCCTCCTCCGCGAG AGAAAAAACAGCTCGGCAAATACGACGGCTGGTTCACCGGCAGTAACAGC AGGACTAGGCGGCGGCGTGGGGCAACAAGGACCACCTGTCGATGACAAAT TCGACGAGCTCTCGGCCGACCTGCCCCGAATCGGGTCTAAGGAACAAGCG GCGCTGCGAACGATGTACCGGAAGTGGTGGATGAAGGTTGCGAACGGTGG GAGTCCGCCCTCGCCGTGCACACCGGTGGGCCCCGTGGATGACGGCATTC CGCCGGTCGCCCGACAACATTTGCCGATCCAAGGAGGCGTGTCCGGGGGC GACATGACGGGGACGGCAGAATCCTCGGCCACCACAGCCGCCGCCGACGT TTCGGGCAATGTTCGGTCATCCGATTTTACTGTTTCGGGAACACGCCAAA GCGGCGACCGACTACCGTGCCCCCAGAAGGAATCGGCCAGCGCGGCCACT ACTGATGTCGAGCCACCCACGGATCGAGGGATGGCAGCAGCGGTGGCGGC GATGGAGAACAGTAGTAGTGATACCAGTAGTCCAACACGTCCGACCGGAG ATTTGGGTTGCTGTTCTCAGGAAAACGTCGAGTCACCTGCAGGAACGAAA GGGTGCCCAGCAGAGGACGGGGACGCCACCGATAAAATGCCGCTCCAGGC TGAAACAGATGCGCCGAAGGCCGCAAGGGATACGCTCGCTTCGGAGCAAC AGCAGCAACAGCAGCAGCAGCAGGATATTTCGTCGGACGTTGAGTCGGTC TCGGAAGACGACGGCCTCGAGAAGGAGCAAGAGGAGGGGCACCACGGCCG CATCTACCTACCGGATGGGAGATTCGTTGCCACCTGGCGAAACAGCTCGG AGGAGATGGCAGATGCGGTTGCAACCTACACAAACGCTGAGAAAGTGGGT GGCGAGGATGGC back to top
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