mRNA_S-firma_M_contig920.20148.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig920.20148.1
Unique NamemRNA_S-firma_M_contig920.20148.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig920.20148.1 vs. uniprot
Match: D7FYY1_ECTSI (Protein serine/threonine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY1_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 4.600e-33
Identity = 76/148 (51.35%), Postives = 98/148 (66.22%), Query Frame = 1 
Query:  133 KRGQLRRLLINNLRKSALGGLGDACAEVRMAQVGLGGNGKDAGV---LQEGKVLGEGSFGIVKEARNTILPGNFALKILKEGASWKARHCAIVEMIVLARLAKDPHENLVGAVSIDDRGGATGKKMPILFQQAEADLATVLRYGGLSM 567
            +RG++R   I N+R+     +G+ CA V+ A+V LGG+G   G    L E  V+GEGSFGIV+ A ++ LPG FA+K LKEGA   AR+CA VEMIV+ARLAK PH N++GA++IDDR  A G  MPIL  +A  D   VL  G  SM
Sbjct:  354 ERGEIRAAFIGNVRQRQAATVGEGCALVQAARVALGGSGGGIGASSSLHESGVIGEGSFGIVEGATHSFLPGEFAVKKLKEGADNNARYCARVEMIVMARLAKSPHPNVIGAIAIDDREAAVG--MPILLPRAHGDFGQVLNDGDWSM 499
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BLAST of mRNA_S-firma_M_contig920.20148.1 vs. uniprot
Match: A0A6H5L7R5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7R5_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 8.980e-28
Identity = 75/176 (42.61%), Postives = 103/176 (58.52%), Query Frame = 1 
Query:   49 GQIEAVDQVRTSEVKPEVKAFGDMVIEHKRGQLRRLLINNLRKSALGGLGDACAEVRMAQVGLGGNGKDAGV---LQEGKVLGEGSFGIVKEARNTILPGNFALKILKEGASWKARHCAIVEMIVLARLAKDPHENLVGAVSIDDRGGATGKKMPILFQQAEADLATVLRYGGLSM 567
            G  +++   R S V      F  +V   + G++R   + N+       + + CA VR A+V LGG+    G    L+ G +LGEGSFG+V+ A  + LPG FALK LKE A  KAR+CA VEMIV++RL  +PH N+VGAV+IDDR  A    MPIL  +A  D   VL++ G +M
Sbjct:  485 GDEDSLSLNRASSVDVGFGNFHPVVDSAEPGEVRTAFVQNVIDRQASTVEEDCALVRAARVALGGSEGGGGANSPLRVGGILGEGSFGVVEGASLSFLPGEFALKRLKEDADDKARYCARVEMIVMSRLVNNPHPNIVGAVAIDDRAAAVD--MPILLPRANGDFEQVLKHDGWTM 658
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BLAST of mRNA_S-firma_M_contig920.20148.1 vs. uniprot
Match: A0A6H5JF73_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF73_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 7.560e-20
Identity = 68/174 (39.08%), Postives = 87/174 (50.00%), Query Frame = 1 
Query:  133 KRGQLRRLLINNLRKSALGGLGDACAEVRMAQVGLGGNGKDAGV---LQEGKVLGEGSFGIVKEARNTILPGNFALKILKE--------------GASWKARH------------CAIVEMIVLARLAKDPHENLVGAVSIDDRGGATGKKMPILFQQAEADLATVLRYGGLSM 567
            +RGQ+R   I N+R+     +G+ CA V+ A+V LGG G   G    L E  V+GEGSFGIVK A ++ LPG FA+K LKE              G SW   H            C  V   +   LA +PH N++GAV+IDD+  A G  MPIL   A  +    L  G  SM
Sbjct:  366 ERGQIRAAFIGNMRQRQAATVGEGCALVQAARVALGGGGGGIGASSSLYESGVIGEGSFGIVKGATHSFLPGEFAVKKLKEVRGPAARAGRLVQGGGSWLLIHHFFASRLGRGGRCTNVNAPLRPCLANNPHPNIIGAVAIDDQAAAVG--MPILLPSANGNSEQGLNDGDRSM 537
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BLAST of mRNA_S-firma_M_contig920.20148.1 vs. uniprot
Match: D7FYH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYH1_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 3.450e-17
Identity = 55/108 (50.93%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:  109 FGDMVIEHKRGQLRRLLINNLRKSALGGLGDACAEVRMAQVGLGGNGKDAGV---LQEGKVLGEGSFGIVKEARNTILPGNFALKILKEGASWKARHCAIVEMIVLAR 423
            FG +V   + G LR   I N+R+     +G+ACA V+ A+V LGG+   AG    LQE  ++GEGSFGIV  A ++ LPG FA+K LKEGA   AR+CA VEMIV+AR
Sbjct:  355 FGRIVKGAQPGVLRTAFITNVRQRREVAVGEACALVQAARVALGGSEGCAGARSPLQEIGIIGEGSFGIVGGATHSFLPGEFAVKRLKEGADKNARYCARVEMIVMAR 462
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BLAST of mRNA_S-firma_M_contig920.20148.1 vs. uniprot
Match: A0A6H5JWE9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWE9_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.270e-12
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:  283 LGEGSFGIVKEARNTILPG-NFALKILKEGASWKARHCAIVEMIVLARLAKDPHENLVGAVSIDDRGGATGKKMPILFQQAEADLATVL 546
            LG GSFG V +     LPG +FA+K + + AS  AR CA+VEM V ARLA+ PH N++GA+S+DD        MPIL  +A  DL + +
Sbjct: 1013 LGYGSFGRVDDVSYASLPGQSFAMKTVTQAASLSARFCALVEMTVFARLARTPHHNVLGALSMDDDSDL----MPILLPKARCDLGSYI 1097
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BLAST of mRNA_S-firma_M_contig920.20148.1 vs. uniprot
Match: A0A6H5JPQ6_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPQ6_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.360e-9
Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = 1 
Query:  283 LGEGSFGIVKEARNTILPGN-FALKILKEGASWKARHCAIVEMIVLARLAKDPHENLVGAVSIDDRGGATGKKMPILFQQAEADLATVLRYGGLSM 567
            LG+G  G V+E      P   FALK + +GA    +H A+VEM+V ARLA  PH+N++GA+++DD    +   MPI+  +A  DL T +    L++
Sbjct:  430 LGQGKCGKVEEVEFADFPEEYFALKTVAKGADEYTKHAALVEMMVFARLAGQPHDNVLGALAVDD----SSPLMPIMMPKATDDLETRMNNDSLAI 521
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BLAST of mRNA_S-firma_M_contig920.20148.1 vs. uniprot
Match: A0A6H5JJH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 5.180e-8
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:  421 RLAKDPHENLVGAVSIDDRGGATGKKMPILFQQAEADLATVLRYGGLSM 567
            RLAKDPH N+VGAVSIDDR  A G  MPI   +A +D   VL YGG +M
Sbjct:   19 RLAKDPHRNIVGAVSIDDRAAAVG--MPIFLPRAHSDFGQVLNYGGWAM 65
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BLAST of mRNA_S-firma_M_contig920.20148.1 vs. uniprot
Match: A0A6H5JFB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFB4_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.080e-5
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:  103 KAFGDMVIEHKRGQLRRLLINNLRKSALGGLGDACAEVRMAQVGLGGNGKDAGV---LQEGKVLGEGSFGIVKEARNTILPGNFALKILKE 366
            ++ GD   +  R  +    I N R+     +G+AC  V+ A++ LGG     G    LQE  + GEGSFGIV  A ++ LPG FA+K LKE
Sbjct:  167 RSSGDGGNKRPRTDVAAAFITNTRQCRAVAVGEACVLVQAARIALGGCEGCVGARSPLQEIAITGEGSFGIVSGATHSFLPGEFAVKRLKE 257
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig920.20148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FYY1_ECTSI4.600e-3351.35Protein serine/threonine kinase n=1 Tax=Ectocarpus... [more]
A0A6H5L7R5_9PHAE8.980e-2842.61Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JF73_9PHAE7.560e-2039.08Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FYH1_ECTSI3.450e-1750.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWE9_9PHAE2.270e-1247.19Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JPQ6_9PHAE2.360e-939.58Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6H5JJH4_9PHAE5.180e-861.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFB4_9PHAE1.080e-539.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig920contigS-firma_M_contig920:201..1425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue7.1e-29
Seed eggNOG ortholog2880.D7FYY1
KEGG koko:K05410
KEGG Pathwayko04014,ko04137,ko04620,ko04621,ko04622,ko04623,ko04657,ko05160,ko05161,ko05162,ko05164,ko05165,ko05167,ko05168,ko05169,map04014,map04137,map04620,map04621,map04622,map04623,map04657,map05160,map05161,map05162,map05164,map05165,map05167,map05168,map05169
EggNOG free text desc.IkappaB kinase activity
EggNOG OGsCOG0515@1,KOG4250@2759
EC2.7.11.10
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size570
Cds size567
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig920.20148.1prot_S-firma_M_contig920.20148.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig920 201..1423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828747.4346678-CDS-S-firma_M_contig920:200..5661622828747.4346678-CDS-S-firma_M_contig920:200..566Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig920 201..566 +
1697105137.9531708-CDS-S-firma_M_contig920:200..5661697105137.9531708-CDS-S-firma_M_contig920:200..566Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig920 201..566 +
1622828747.446566-CDS-S-firma_M_contig920:932..9881622828747.446566-CDS-S-firma_M_contig920:932..988Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig920 933..988 +
1697105137.9694357-CDS-S-firma_M_contig920:932..9881697105137.9694357-CDS-S-firma_M_contig920:932..988Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig920 933..988 +
1622828747.4589825-CDS-S-firma_M_contig920:1278..14231622828747.4589825-CDS-S-firma_M_contig920:1278..1423Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig920 1279..1423 +
1697105137.9832082-CDS-S-firma_M_contig920:1278..14231697105137.9832082-CDS-S-firma_M_contig920:1278..1423Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig920 1279..1423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig920.20148.1

>prot_S-firma_M_contig920.20148.1 ID=prot_S-firma_M_contig920.20148.1|Name=mRNA_S-firma_M_contig920.20148.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=189bp
RGTPQTAPTAAEERPGGQIEAVDQVRTSEVKPEVKAFGDMVIEHKRGQLR
RLLINNLRKSALGGLGDACAEVRMAQVGLGGNGKDAGVLQEGKVLGEGSF
GIVKEARNTILPGNFALKILKEGASWKARHCAIVEMIVLARLAKDPHENL
VGAVSIDDRGGATGKKMPILFQQAEADLATVLRYGGLSM
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mRNA from alignment at S-firma_M_contig920:201..1425+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig920.20148.1 ID=mRNA_S-firma_M_contig920.20148.1|Name=mRNA_S-firma_M_contig920.20148.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1225bp|location=Sequence derived from alignment at S-firma_M_contig920:201..1425+ (Sphaerotrichia firma Sfir_13m male)
AGGGGGACACCGCAGACAGCGCCAACGGCGGCCGAGGAGAGGCCGGGAGG
CCAGATAGAGGCCGTTGACCAGGTGCGGACGTCGGAGGTGAAGCCAGAGG
TTAAGGCGTTCGGCGACATGGTCATCGAGCACAAGCGCGGCCAGTTAAGG
CGCCTCTTAATCAACAACCTTCGAAAGAGCGCACTGGGGGGCTTGGGGGA
CGCCTGCGCCGAGGTGAGGATGGCGCAGGTCGGTCTCGGCGGGAACGGGA
AGGACGCCGGTGTTCTCCAAGAAGGGAAGGTGCTCGGGGAAGGGTCGTTT
GGCATCGTCAAGGAGGCTCGCAACACAATTCTGCCGGGGAACTTCGCTCT
GAAGATACTGAAGGAGGTGAGGTCGTAGTCTAGATGCGCCGCAGCAGCGT
GGGGGAATGACAAGGTGAATATGCCAGCGTCCCCTTCCACGGGGTTGATA
TGGTGGTGAAATGTGAGCCGGGAAGCTTAGACCGCATGACAAAGACGTCA
CATGTGAAACAAGGAACGAGTTAAGTGTAGATTGCCAAACTCCAACTCCG
TGCCAATTGCTCCTCGAATCCCAAGATAGCTCCTGTATCAGGGGGAAGAT
TGCAATCGATCCGACGTCTCAAATCCCGAAAGGTGGACACAAACGATTCG
TTTGCGGCCATGCTCACACCACCATCCCCCCTACCCTACCCGCCGCAAAA
CCCAACCCGCTTGACGCGTTTCGCGTTTTCAGGGTGCGTCCTGGAAGGCG
AGACACTGCGCCATCGTGGAGATGATTGTCCTGGCACGGTAAGATTGATT
CGGGCTCTTGTTATGGGGGTTTCGACATCAATATGCATCTCGGTTCTATT
TTTCGTCGATCGTCGCACCAAAAAACACACAGATGGCAGTTAACCTGCTC
CACTCCATGGTATCATTTGTTGCTCTTCGGATGGTGAAACAATCATGCAC
CGCAAACGACCGAGAGCTGTGCGTGTGTTGGATGGTCATGACCTTGCACG
CGCGTCGCCCTCTTTCCTCGGTGCCGTCCGGCGATACTGTTGTTGTCTCG
GTATTTGATGGGATGTACCAATACCCAGTCTCGCTAAGGACCCTCACGAG
AACCTTGTCGGTGCCGTGTCAATCGACGATCGGGGAGGAGCCACCGGGAA
GAAGATGCCAATCCTTTTCCAGCAGGCAGAGGCCGACTTGGCCACCGTGC
TTCGGTATGGCGGGCTGAGTATGCC
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Coding sequence (CDS) from alignment at S-firma_M_contig920:201..1425+

>mRNA_S-firma_M_contig920.20148.1 ID=mRNA_S-firma_M_contig920.20148.1|Name=mRNA_S-firma_M_contig920.20148.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1134bp|location=Sequence derived from alignment at S-firma_M_contig920:201..1425+ (Sphaerotrichia firma Sfir_13m male)
AGGGGGACACCGCAGACAGCGCCAACGGCGGCCGAGGAGAGGCCGGGAGG
CCAGATAGAGGCCGTTGACCAGGTGCGGACGTCGGAGGTGAAGCCAGAGG
TTAAGGCGTTCGGCGACATGGTCATCGAGCACAAGCGCGGCCAGTTAAGG
CGCCTCTTAATCAACAACCTTCGAAAGAGCGCACTGGGGGGCTTGGGGGA
CGCCTGCGCCGAGGTGAGGATGGCGCAGGTCGGTCTCGGCGGGAACGGGA
AGGACGCCGGTGTTCTCCAAGAAGGGAAGGTGCTCGGGGAAGGGTCGTTT
GGCATCGTCAAGGAGGCTCGCAACACAATTCTGCCGGGGAACTTCGCTCT
GAAGATACTGAAGGAGAGGGGGACACCGCAGACAGCGCCAACGGCGGCCG
AGGAGAGGCCGGGAGGCCAGATAGAGGCCGTTGACCAGGTGCGGACGTCG
GAGGTGAAGCCAGAGGTTAAGGCGTTCGGCGACATGGTCATCGAGCACAA
GCGCGGCCAGTTAAGGCGCCTCTTAATCAACAACCTTCGAAAGAGCGCAC
TGGGGGGCTTGGGGGACGCCTGCGCCGAGGTGAGGATGGCGCAGGTCGGT
CTCGGCGGGAACGGGAAGGACGCCGGTGTTCTCCAAGAAGGGAAGGTGCT
CGGGGAAGGGTCGTTTGGCATCGTCAAGGAGGCTCGCAACACAATTCTGC
CGGGGAACTTCGCTCTGAAGATACTGAAGGAGGGTGCGTCCTGGAAGGCG
AGACACTGCGCCATCGTGGAGATGATTGTCCTGGCACGGGTGCGTCCTGG
AAGGCGAGACACTGCGCCATCGTGGAGATGATTGTCCTGGCACGTCTCGC
TAAGGACCCTCACGAGAACCTTGTCGGTGCCGTGTCAATCGACGATCGGG
GAGGAGCCACCGGGAAGAAGATGCCAATCCTTTTCCAGCAGGCAGAGGCC
GACTTGGCCACCGTGCTTCGGTATGGCGGGCTGAGTATGTCTCGCTAAGG
ACCCTCACGAGAACCTTGTCGGTGCCGTGTCAATCGACGATCGGGGAGGA
GCCACCGGGAAGAAGATGCCAATCCTTTTCCAGCAGGCAGAGGCCGACTT
GGCCACCGTGCTTCGGTATGGCGGGCTGAGTATG
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