mRNA_S-firma_M_contig92.20145.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig92.20145.1 vs. uniprot
Match: D7FZB9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB9_ECTSI) HSP 1 Score: 125 bits (315), Expect = 5.810e-31 Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 2
Query: 1412 MGRDCKEAARALLACMQKTPCMKEGGGLKECIKTPDREFCKLDHQSFFECKRGQLDMRTRIRGERSF 1612
MGRDCKEAARAL ACM+KT CMK+GG LK+C+KT DREFC+ DHQSFFECKRGQLDMRTRIRGERSF
Sbjct: 1 MGRDCKEAARALYACMKKTQCMKDGGRLKDCLKTSDREFCRQDHQSFFECKRGQLDMRTRIRGERSF 67
BLAST of mRNA_S-firma_M_contig92.20145.1 vs. uniprot
Match: A0A835ZA98_9STRA (Cytochrome c oxidase assembly protein PET191 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA98_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 2.750e-20 Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 2
Query: 1412 MGRDCKEAARALLACMQKTPCMKEGGGLKECIKTPDREFCKLDHQSFFECKRGQLDMRTRIRGERSF 1612
M DCKE ARALLACMQ++ CM+ GG L+EC+KT + C+L +S+FEC+RGQLDMRTRIRG RS+
Sbjct: 1 MSSDCKEHARALLACMQESKCMQGGGKLRECLKTDEVHQCELQRRSYFECRRGQLDMRTRIRGPRSY 67
BLAST of mRNA_S-firma_M_contig92.20145.1 vs. uniprot
Match: K8YUW7_NANGC (Cytochrome c oxidase assembly mitochondrial n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YUW7_NANGC) HSP 1 Score: 88.6 bits (218), Expect = 7.490e-18 Identity = 40/67 (59.70%), Postives = 49/67 (73.13%), Query Frame = 2
Query: 1412 MGRDCKEAARALLACMQKTPCMKEGGGLKECIKTPDREFCKLDHQSFFECKRGQLDMRTRIRGERSF 1612
M + CKEAA ALLACMQ+ PCMK GG L EC+K+ D + C + ++F CKR QLDMRTRIRG R +
Sbjct: 1 MPKSCKEAAYALLACMQQQPCMKTGGSLTECLKSEDVDACSVQRNAYFLCKRSQLDMRTRIRGTRVY 67
BLAST of mRNA_S-firma_M_contig92.20145.1 vs. uniprot
Match: A0A482S5P5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5P5_9ARCH) HSP 1 Score: 72.4 bits (176), Expect = 3.750e-12 Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 2
Query: 1412 MGRDCKEAARALLACMQKTPCMKEGGGLKECIKTPDREF-CKLDHQSFFECKRGQLDMRTRIRGERSF 1612
MG+ CK+ AR LL CM +T C+++G +KEC+KT + E C +++FECKRG LDMR RIRG + +
Sbjct: 1 MGKSCKDIARTLLDCMAETQCVQQGQDVKECMKTMEGEDRCGQLRRAYFECKRGSLDMRYRIRGPKVY 68
BLAST of mRNA_S-firma_M_contig92.20145.1 vs. uniprot
Match: L1JBB4_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JBB4_GUITC) HSP 1 Score: 68.2 bits (165), Expect = 1.410e-10 Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 2
Query: 1412 MGRDCKEAARALLACMQKTPCMKEGGGLKECIKTPDR-EFCKLDHQSFFECKRGQLDMRTRIRGER 1606
M CK LL C+ TPC GG +K+C++ + E CK Q FFEC+RGQ+DMR RIRG R
Sbjct: 1 MSTSCKNLKNKLLICISTTPCANRGGTVKQCLQDNELPEDCKKIRQMFFECRRGQMDMRNRIRGNR 66
BLAST of mRNA_S-firma_M_contig92.20145.1 vs. uniprot
Match: K3X2Q5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2Q5_GLOUD) HSP 1 Score: 64.7 bits (156), Expect = 2.610e-9 Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 2
Query: 1412 MGRDCKEAARALLACMQKTPCMKEGGG-LKECIKTPDREF-CKLDHQSFFECKRGQLDMRTRIRGER 1606
MG+ C++ A AL CM CM +G LK+C+K + C+ Q++FECKRGQLDMRTRIRG +
Sbjct: 1 MGKSCRDMAEALRDCMVTEECMSDGTRTLKQCLKMKEYAHECRGYRQAYFECKRGQLDMRTRIRGPK 67
BLAST of mRNA_S-firma_M_contig92.20145.1 vs. uniprot
Match: A0A3R7MTX6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MTX6_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 4.490e-9 Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 2
Query: 1412 MGRDCKEAARALLACMQKTPCMKEGGG-LKECIKTPDREF-CKLDHQSFFECKRGQLDMRTRIRGER 1606
MG+ C++AA AL CM + CM +G LK+C+ + CK ++FECKRGQLDMRTRIRG +
Sbjct: 1 MGKACRDAAEALRDCMMEQECMADGTRTLKQCLHERTYSYECKEFRVAYFECKRGQLDMRTRIRGPK 67
BLAST of mRNA_S-firma_M_contig92.20145.1 vs. uniprot
Match: A0A5A8EH60_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EH60_CAFRO) HSP 1 Score: 63.5 bits (153), Expect = 7.030e-9 Identity = 26/63 (41.27%), Postives = 41/63 (65.08%), Query Frame = 2
Query: 1418 RDCKEAARALLACMQKTPCMKEGGGLKECIKTPDREFCKLDHQSFFECKRGQLDMRTRIRGER 1606
R C++A L C+ K+ C+ +G +EC++ + C L ++ +EC+RGQLD RTRIRG+R
Sbjct: 6 RACRDAMHQLAQCLAKSQCISDGHSARECMQNGEVPQCDLSRRALYECRRGQLDARTRIRGQR 68
BLAST of mRNA_S-firma_M_contig92.20145.1 vs. uniprot
Match: A0A7S2JR76_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JR76_9EUKA) HSP 1 Score: 63.9 bits (154), Expect = 1.010e-8 Identity = 31/64 (48.44%), Postives = 39/64 (60.94%), Query Frame = 2
Query: 1412 MGRDCKEAARALLACMQKTPCMKEGGGLKECIKTP-DREFCKLDHQSFFECKRGQLDMRTRIRG 1600
M C E ALL C+ +PC+ G +KEC++ P D CK +FF CKRGQLDMR RI+G
Sbjct: 24 MASSCSEQRHALLECLVDSPCILAGRPIKECMELPNDESGCKELRMAFFTCKRGQLDMRKRIKG 87
BLAST of mRNA_S-firma_M_contig92.20145.1 vs. uniprot
Match: A0A024TWV1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TWV1_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 1.440e-8 Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 2
Query: 1412 MGRDCKEAARALLACMQKTPCMKEGGG-LKECIKTPD-REFCKLDHQSFFECKRGQLDMRTRIRGER 1606
MG+ C++ A AL CM + CM +G LKEC++ + R CK ++FECKRGQ+DMR RIRG +
Sbjct: 1 MGKACRDMAEALRDCMCEKECMSDGTKTLKECLRMEEFRHECKEYRLAYFECKRGQIDMRQRIRGPK 67 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig92.20145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig92.20145.1 >prot_S-firma_M_contig92.20145.1 ID=prot_S-firma_M_contig92.20145.1|Name=mRNA_S-firma_M_contig92.20145.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=97bp MSSVFPPPYRPLLYRRERSINLSPQGTASMGRDCKEAARALLACMQKTPCback to top mRNA from alignment at S-firma_M_contig92:29610..32623+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig92.20145.1 ID=mRNA_S-firma_M_contig92.20145.1|Name=mRNA_S-firma_M_contig92.20145.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3014bp|location=Sequence derived from alignment at S-firma_M_contig92:29610..32623+ (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig92:29610..32623+ >mRNA_S-firma_M_contig92.20145.1 ID=mRNA_S-firma_M_contig92.20145.1|Name=mRNA_S-firma_M_contig92.20145.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=582bp|location=Sequence derived from alignment at S-firma_M_contig92:29610..32623+ (Sphaerotrichia firma Sfir_13m male)back to top |