mRNA_S-firma_M_contig92.20144.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig92.20144.1 vs. uniprot
Match: A0A6H5JA82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA82_9PHAE) HSP 1 Score: 444 bits (1142), Expect = 6.510e-122 Identity = 633/1877 (33.72%), Postives = 753/1877 (40.12%), Query Frame = 2
Query: 68 KENRGVVAAISAAGPGVLHLPFVELGILRATGETSNSVVHAGSPAVQKAWVALRLLQRQRSLASSPAIPRFFKDSPLGRENLESKNRAVANSLAGDAVELSAR--LERCMASGPRGEADRPLTSVAAKIKESVAGLIKGRQRLDAAGTLPNGLQPPPPNAXXXXXXXAPASATGGTIP-----------VLPTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXXEGVAKPAPPAAA-------VIGTPVAAAAYGAGGGAEVDGEAGSGGGEGVEQLKGDEKXXXXXXXXXXXXXXXXXXXXXXXSRAPRALCNPRCLDELLDCLVEYRDEDGRPILYLNDEAEXXXXXXXXXXXXXXXXXNLPLQDEWDEREMGNRRLARRRGAEDQAAAEMRLWGCETDAAGVPVPAXXXXXXXXXXXXXXXXG----------------------FVPFEPACDESWQVAESAPAGHKMVRQLMHVNGVEADELTLAELHASVLSEDALSLAQEGQERDTAPVSYAICHVSIPVGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVAGGKAPANGVDGAVPVASAV-----------------------------EGGAAXXXXAKVPAKPSP-SEQVGATERGAAGKADTASSTPA-------------------------------------------------------------------------------RPXXXXXXXXXXVRDDNDQSRQGEVSVSTALQQRNQLREQRKRNAEMLXXXXXXXXXXXXXXXXXXXXXXXXXXEADAQAEARAEALRRRNDPGTKAKRKATAEAAAAAARENRVEDPCPGLVVWAELGSGQRWPSLIQETLAMDRCLIRYLGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEEVEVSSLVKFPGGQSLVATGWEVLAPPAAEDLSSKEAREEHIRREFLLPANEGRKGLQLAIDHAVRLCYMYSWEADSRSVNVLSGTPVDGIP-DKKKRTQERKARN-----------------------------LRNGRA-------------RIESYEAHPDQWILPADTWKSYDRFRIVFNKK------LCEKMRATSIEVQGWIK----------RRA------------------------------------PPSATPAAAPPATXXXXXXXXXXXXXXXXSVPASAPTDTARGPGSNDTSPPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAKVETAAGEAGGSDEDVG-GAVDE----GVAPDSAVRTK----DPYTTKEMLERMNSLFDTAGIALDGQFYHLLLGQRAKIEKEKAR---EAXXXXXXXXXXXXXXXXXGSGKRKAAGGXXXXXXXXXXXXXXXXGRGKKAATXXXXXXXXXXXXXXXXXXXXXGSSDAGDAAPTLGRAGSQPTAVGDRPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXGDMSRGGPDDAADV-----------SCGEVDGGDV---GXXXXSDFXXXXXXXXXXXXXXXRREGASRPALERARAKAILAKGKTSAISKLRDNIPTGGAGGGSGTSYFIPKKAPAATGGAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXI--GTIPKKPNAIPKKQSSGSDPRGFDAGGGA------RPPKPSPHNRPDAVRGLEDNIEYHDTIEEEFKQRLTQGGAYLGTQSRNNFWNKVKNATEQSNRLQERKNTIVKAL 4858
KENRG S AGP + LPFVEL ILRATGETSN+V HA SPA +KAWVALRLLQ+Q+SL + +P F +SPL ++ + + R L+ C R R VA ++E VAG GR R TL +P PP+ +P S G T+P LP+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +G A P+ PAA+ V G PV G AEV A + G GDE LCNPRCLDELLD LVEYRD+DGRPILY ND ++ LQDEWDEREM N R A R AE QAAAE+RLWGCETDAAG P A G FVPFEPACDE WQ+A PAG KMVRQLM VNGVEADELTLAE ASVLSEDALSLAQEG DTA VSYA+CHVS+P+ E XXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXX A V P V G+ A+ P + ++ VG G D S PA XXXXXXXXXX S + SVSTALQ RN++REQRK AE L + +ARAEALRRRNDP KAKRKA A+AAAA E V + CPGLVVWA+ +G+ WPSLIQ+ L RCL+RYLGP + EV+VSSL KFPGG L E ++PP E ++KE ++ HI EF LP N +K LQLAIDHAVRLC ++ W+ VNV++G P+DG+ KK+R ER+AR L R+ RIE + HP QW ADTW SYDRFR++FN K LC K+R ++ WI+ RR PPS+TP A P XXXXXX + P D A GS+ S A +E A S D G GA E GV S R + +PYTT E++ R+N L +G+ LD Y L+G+R ++ KA G GKRK G K T G + T G S+P + G+ + D G DD SCG+ GG+ XXX SD+ R++GAS+PA+ERARAKAIL K K+ +KL+D IPT G GSGTSYFIPKK GG + G K A S SDP G + GG + PPKP +RPDA+RGLE N + D +EEE +Q+L GGAYLGT SRN W K++ +EQSNRL+ERK I+K+L
Sbjct: 570 KENRG---GASRAGPRRVELPFVELRILRATGETSNTVAHAESPAAEKAWVALRLLQQQQSLVINNVLPNFLDESPLSKQARTRRWPIASRETPLHFPRSWTRGWLKGCEDKRARSRLSRKRLRVAGLMRE-VAGGPWGRAR-----TLSKRSKPSPPSV-------SPGSRGGATVPRSASPPTPSAKCLPSSATETPAPVPVATAATSISDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VDGAAVPSVPAASGIMATAGVSGPPV----RGDRNVAEVLTSADTAGAVAGPPRFGDEAEAAGGEGDSGGAGGGEKGARVA------GLCNPRCLDELLDSLVEYRDDDGRPILYFNDNIASFKAAVGGREAGGG---DIRLQDEWDEREMANLRQAGSRQAEAQAAAEIRLWGCETDAAGAPTGASPSSAGHVGRAATATGGGAXXXXXXXXXXXXGVDADNARFVPFEPACDEKWQLAMPMPAGRKMVRQLMFVNGVEADELTLAE--ASVLSEDALSLAQEG---DTAAVSYAVCHVSVPMDEAEMAAAAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXVSAVAQSAVAPAXXXXXXXXXXXXXXXXXMAAVPPAVVAGDPARPRVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTAHTQAEAPRSTNAVNDSVGP---GPVNVGDGRGSEPAPGGPSSDKNGKRHEAPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPVPQSSVSTALQHRNEMREQRKHTAEALA-------------------------DETRAKKARAEALRRRNDPEVKAKRKAAAKAAAAEVAERAVTEACPGLVVWADR-AGEPWPSLIQKMLPWKRCLVRYLGP-----------------------VRGSSADETSGEVDVSSLAKFPGGLPLCQL-MEKISPPLTEQ-ATKEEKDAHIHDEFFLPVNADKKVLQLAIDHAVRLCIVHGWKQGVDMVNVINGEPLDGLGLSKKQRGTERQARMPCCGSPDFVLLCQAIGLEQAIVAAIWMVLLNPARSLTCRHPFPPFLQRRIERFLKHPSQWTSHADTWSSYDRFRVMFNDKAEDADPLCLKLRTACSGIEQWIRSTLKRWLIEGRRTWIGRVVNCEIALRWIMLGPNAPTPPVPLVVSNSSGEPPSSTPTAIPAIGAPAAVASQAXXXXXXRAQPTEGSADAA---GSSTGS------KKATTTPVTDPSRPKTSLRPISPLQSDQTSADAGDGMTIGDDAEPHDDPGNHSTSGEGKERMKGGTQPIVSPRDLGAGTGVSGTEGSSNDAGSQLVGTGKGRGTPEADIEEVAKSQSDSTSDAGEGATPEDGAAGVQTASGFRARSTGEEPYTTDELVARLNFLSAQSGLTLDAALYDTLIGRRVDVDIAKASGEDTVAAERPEVGKDKSDAVPKGKGKRKLPHGAGKSEPKAGASA-------KDVDTHVADKSVTITPIVTAQPSNVKGRLEDPTEEETYGDRTSRPPSGGE---EGTVLSAAVAASTSAADEPRWQPAAKGQNDCQPIGKDDGTSTRTAXXXXXXXXSCGDNGGGNDHVDXXXXGSDYGDGVTGSPPRRPLSSRQQGASKPAIERARAKAILGKAKSD-NAKLKDKIPTS-VGSGSGTSYFIPKKNATFAGGGXXXSGMSTISKQPIPQKPVNLEVTPSSPGMAAGGTSKSSCAAITSSSISSDPHGLETGGSSSSTGLTHPPKPIAEDRPDAMRGLEQNASHRDAVEEECRQKLGTGGAYLGTPSRNRIWEKLQRTSEQSNRLRERKVKIMKSL 2335
BLAST of mRNA_S-firma_M_contig92.20144.1 vs. uniprot
Match: D7FZC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC5_ECTSI) HSP 1 Score: 412 bits (1060), Expect = 1.640e-113 Identity = 399/1072 (37.22%), Postives = 467/1072 (43.56%), Query Frame = 2
Query: 68 KENRGVVAAISAAGPGVLHLPFVELGILRATGETSNSVVHAGSPAVQKAWVALRLLQRQRSLASSPAIPRFFKDSPLGRENLESKNRAVANSLAGDAVELSARLERCMASGPRGEADRPLTSVAAKIKESVAGLIK-------GRQRLDAAGTLPNGLQPPPPNAXXXXXXXAPASATGGTIPVL---PTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXX-----EGVAKPAPPAAAVI-------GTPV-----------AAAAYGA-------GGGAEVDGEAGSGGGEGVEQLKGDEKXXXXXXXXXXXXXXXXXXXXXXXSRAPRALCNPRCLDELLDCLVEYRDEDGRPILYLNDEAEXXXXXXXXXXXXXXXXXNLPLQDEWDEREMGNRRLARRRGAEDQAAAEMRLWGCETDAAGVPVPAXXXXXXXXXXXXXXXXG----------------------FVPFEPACDESWQVAESAPAGHKMVRQLMHVNGVEADELTLAELHASVLSEDALSLAQEGQERDTAPVSYAICHVSIPVGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVAGGKAPANGVDGAVPVASAVEGGAAXXXXAKVPAKPSPSEQVGATERGAAGKADTASSTPARPXXXXXXXXXXVRDDNDQSRQGEVSVSTALQQRNQLREQRKRNAEMLXXXXXXXXXXXXXXXXXXXXXXXXXXEADAQAEARAEALRRRNDPGTKAKRKATAEAAAAAARENRVEDPCPGLVVWAELGSGQRWPSLIQETLAMDRCLIRYLGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEEVEVSSLVKFPGGQSLVATGWEVLAPPAAEDLSSKEAREEHIRREFLLPANEGRKGLQLAIDHAVRLCYMYSWEADSRSVNVLSGTPVDGIP-DKKKRTQERKARNLRNGRARIESYEAHPDQWILPADTWKSYDRFRIVFNKK------LCEKMRATSIEVQGWIKRRA-----PPSATPAAAP 3061
KENRG S GP + LPFVEL ILRATGETSN+V HA S A QKAWVA RLLQ+Q+SL + +PRF +SPL ++NLES+N+A+A+SL GDA ELSA+L++ M G RG+ PLT VA KI ESVA L++ GR AGTL +P PP+ +P S G T+P PT XXXXXXXXXXXXXXXXXXXX R +G A P+ PAA+ I G P+ +A A GA GG AE DG GGG G + KG LCNPRCLDELLD LVEYRD+DGRPILY ND + ++ LQDEWDEREM N R A R AE QAAAE+RLWGCETDAAG P A FVPFEPACDE+WQ+A PAG KMVRQLM VNGVEADELTLAELHASVLSEDALSLAQEG DTA+ RK AE L XXXXXXXXX LRRRNDP KAKRKA AE V + C GLVVWA+ +G+ WPSLIQ+TL RCL+RYLGP + EV+VSSL KFPGG L E ++PP E ++KE ++ HI EF LP N +K LQLAIDHAVRLC ++ W+ VNV++G P+DG+ KKKR ER+ R IE + HP QW ADTW SYDRFR++FN K LC K+R ++ WI+ PPS+TP A P
Sbjct: 534 KENRG---GASRPGPRRVELPFVELRILRATGETSNTVAHAESLAAQKAWVAFRLLQQQQSLVVNNVLPRFLDESPLSKQNLESRNQALADSLKGDAAELSAKLDQRMTPGLRGQKG-PLTPVARKITESVARLMREVAGGPWGR-----AGTLSKRSKPSPPSV-------SPGSRGGATVPRSASPPTPSASLPXXXXXXXXXXXXXXXXXXXXAATSGGAGVVAKALPMGRRSASPPQAPARTRATAAVDGAAVPSVPAASGIMATAGVPGPPIRGDRNVAEVLPSAEAAGAVAGPPRFGGEAEADGGEVDGGGAGSGE-KG---------------------------ARVSGLCNPRCLDELLDSLVEYRDDDGRPILYFNDNIDSFKAAVGGREAVSD---DIRLQDEWDEREMANLRQAGSRQAETQAAAEIRLWGCETDAAGAPTGAAPSSAGHLGRAATATGSXXXXXXXXXXERVAGVDADNARFVPFEPACDENWQLAMPMPAGRKMVRQLMFVNGVEADELTLAELHASVLSEDALSLAQEG-----------------------------------------------------------------------------------------------------------------------------------------DTAA--------------------------------------------RKHTAEALADEAXXXXXXXXX-------------------------LRRRNDPEVKAKRKAAAEXXXXXXXXRAVTEACLGLVVWADR-AGEPWPSLIQKTLPQKRCLVRYLGP-----------------------VRGSSTDETSGEVDVSSLAKFPGGLPLCQL-MEKISPPLTEQ-ATKEEKDAHIHDEFFLPVNADKKVLQLAIDHAVRLCIVHGWKQGVDMVNVINGEPLDGLGLSKKKRGTERQRR--------IERFLKHPSQWTSHADTWSSYDRFRVMFNDKAEDADPLCLKLRTACSGIEQWIRSTLNSSGEPPSSTPTAIP 1318
BLAST of mRNA_S-firma_M_contig92.20144.1 vs. uniprot
Match: D7G8I6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I6_ECTSI) HSP 1 Score: 146 bits (368), Expect = 4.310e-34 Identity = 89/244 (36.48%), Postives = 128/244 (52.46%), Query Frame = 2
Query: 2306 ARENRVEDPCPGLVVWAELGSGQRWPSLIQETLAMDRCLIRYLGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEEVEVSSLVKFPGGQSLVATGWEVLAPPAAEDLSSKEAREEHIRREFLLPANEGRKGLQLAIDHAVRLCYMYSWEADSRSVNVLSGTPVDGIPDKKKRTQERKARNLRNGRARIESYEAHPDQWILPADTWKSYDRFRIVFNK------KLCEKMRATSIEVQGWI 3019
AR RVE P PGLVVWA+ G+ + WPSLI++ + D+ + +LGP +EV SSL++FPGG L+A ++ PP + + K+A+ H+R EF L AN+ R+ LQLAIDHAV LC +Y+W D+ VNVL G P+D + A +NGR R+ A D+W + DTW+S++R R++ N LC+ +R EV+ WI
Sbjct: 123 ARGGRVEKPTPGLVVWAKRGA-ELWPSLIRQKVGYDKWTVVHLGP---------------VVRQTRGSSSPTEPAFSVKEVMSSSLLQFPGGVPLMALKEKLKRPPESTE---KKAKRAHVRDEFSLLANKERQVLQLAIDHAVHLCVVYAWGNDANMVNVLDGVPLDDLG--------LTAEGAQNGRKRLRKLMARQDRWAMTPDTWRSWERLRLIVNLGDTSVGSLCQNLRYVYQEVENWI 339
BLAST of mRNA_S-firma_M_contig92.20144.1 vs. uniprot
Match: D7G8E0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E0_ECTSI) HSP 1 Score: 107 bits (266), Expect = 1.470e-22 Identity = 63/159 (39.62%), Postives = 82/159 (51.57%), Query Frame = 2
Query: 1028 PRCLDELLDCLVEYRDEDGRPILYLNDEAEXXXXXXXXXXXXXXXXXNLPLQDEWDEREMGNRRLARRRGAEDQAAAEMRLWGCETDAAGVPVPAXXXXXXXXXXXXXXXX---GFVPFEPACDESWQVAESAPAGHKMVRQLMHVNGVEADELTLAEL 1495
P L ELLD LVE+ ++DGRP+LYL D+ E L +QDEWD+RE + AR R A+ + AE+ WGCETD G + + PF+ DE WQV A ++VRQL+ VNG+EADELTLAE+
Sbjct: 9 PHDLKELLDSLVEHTEDDGRPVLYLKDDGE-----------------ELQVQDEWDQREELQTQQARHRDADARTRAELEAWGCETDVTGAVIRSGGRSQDSAMGVGGIIACETRVAPFDLVSDEDWQVVSDLQADQRVVRQLVCVNGIEADELTLAEV 150 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig92.20144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig92.20144.1 >prot_S-firma_M_contig92.20144.1 ID=prot_S-firma_M_contig92.20144.1|Name=mRNA_S-firma_M_contig92.20144.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=2273bp MASGPRGEADRPLTSVAAKIKESVAGLIKGRQRLDAAGTLPNGLQPPPPNback to top mRNA from alignment at S-firma_M_contig92:949..16509+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig92.20144.1 ID=mRNA_S-firma_M_contig92.20144.1|Name=mRNA_S-firma_M_contig92.20144.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=15561bp|location=Sequence derived from alignment at S-firma_M_contig92:949..16509+ (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig92:949..16509+ >mRNA_S-firma_M_contig92.20144.1 ID=mRNA_S-firma_M_contig92.20144.1|Name=mRNA_S-firma_M_contig92.20144.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=13638bp|location=Sequence derived from alignment at S-firma_M_contig92:949..16509+ (Sphaerotrichia firma Sfir_13m male)back to top |