mRNA_S-firma_M_contig9190.20140.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9190.20140.1
Unique NamemRNA_S-firma_M_contig9190.20140.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9190.20140.1 vs. uniprot
Match: A0A6H5KTA9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTA9_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.090e-16
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 QDIAPETPAIANYTTGEVMGHSSDRLSGRFGVSRQEQD 114
            +DIAPETPAIANYTTGEVMGHSSDRLSGRFG+SRQEQD
Sbjct:  209 KDIAPETPAIANYTTGEVMGHSSDRLSGRFGISRQEQD 246
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BLAST of mRNA_S-firma_M_contig9190.20140.1 vs. uniprot
Match: A0A835ZCM0_9STRA (Acetyl-CoA acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCM0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.300e-15
Identity = 33/38 (86.84%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 QDIAPETPAIANYTTGEVMGHSSDRLSGRFGVSRQEQD 114
            +D+APETPAIANYTTGEVMGHSSDRL+GRFG+SR+EQD
Sbjct:  183 KDLAPETPAIANYTTGEVMGHSSDRLAGRFGISREEQD 220
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BLAST of mRNA_S-firma_M_contig9190.20140.1 vs. uniprot
Match: A0A482RQT4_9ARCH (Acetyl-CoA C-acyltransferase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RQT4_9ARCH)

HSP 1 Score: 72.8 bits (177), Expect = 1.110e-14
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    4 DIAPETPAIANYTTGEVMGHSSDRLSGRFGVSRQEQD 114
            D+APE PAIANYTTGEVMGHSSDRLS +FGVSR+EQD
Sbjct:  151 DLAPEAPAIANYTTGEVMGHSSDRLSAKFGVSRKEQD 187
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BLAST of mRNA_S-firma_M_contig9190.20140.1 vs. uniprot
Match: A0A7S2AT36_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AT36_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.990e-14
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 QDIAPETPAIANYTTGEVMGHSSDRLSGRFGVSRQEQD 114
            +D APE PAIANYTTGEVMGHSSDRLS RFG+SRQ+QD
Sbjct:  173 KDFAPEAPAIANYTTGEVMGHSSDRLSSRFGISRQDQD 210
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BLAST of mRNA_S-firma_M_contig9190.20140.1 vs. uniprot
Match: W7SYP3_9STRA (Beta-ketoacyl-thiolase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYP3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.590e-14
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 QDIAPETPAIANYTTGEVMGHSSDRLSGRFGVSRQEQD 114
            +D+  ETPAIANYTTGEVMGHSSDRLS +FGVSR+EQ+
Sbjct:   18 KDLGLETPAIANYTTGEVMGHSSDRLSAKFGVSRREQE 55
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BLAST of mRNA_S-firma_M_contig9190.20140.1 vs. uniprot
Match: A0A812ZFW1_SYMMI (HADHB protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZFW1_SYMMI)

HSP 1 Score: 69.3 bits (168), Expect = 6.590e-14
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 QDIAPETPAIANYTTGEVMGHSSDRLSGRFGVSRQEQD 114
            +D APE PAIANYTTGEVMGHSSDRL+ +FGVSR++QD
Sbjct:   18 KDFAPEAPAIANYTTGEVMGHSSDRLAQKFGVSRKDQD 55
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BLAST of mRNA_S-firma_M_contig9190.20140.1 vs. uniprot
Match: A0A7S2W305_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W305_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.010e-13
Identity = 29/38 (76.32%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 QDIAPETPAIANYTTGEVMGHSSDRLSGRFGVSRQEQD 114
            +D+APE PAI+NYTTGEVMGHS+DRL+ RFGVSR++QD
Sbjct:  159 KDLAPEAPAISNYTTGEVMGHSADRLAARFGVSREDQD 196
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BLAST of mRNA_S-firma_M_contig9190.20140.1 vs. uniprot
Match: A0A7S3M7M8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7M8_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.270e-12
Identity = 29/37 (78.38%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    4 DIAPETPAIANYTTGEVMGHSSDRLSGRFGVSRQEQD 114
            D+APE PAIAN+TTGEVMGHSSDRL+ +FGVSR++QD
Sbjct:  143 DLAPEAPAIANFTTGEVMGHSSDRLAAKFGVSRKDQD 179
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BLAST of mRNA_S-firma_M_contig9190.20140.1 vs. uniprot
Match: A0A7S2UU92_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU92_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.780e-12
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 QDIAPETPAIANYTTGEVMGHSSDRLSGRFGVSRQEQD 114
            +D+APETPAIANYTTGEVMG SSDRL+  FG+SR++QD
Sbjct:  171 KDLAPETPAIANYTTGEVMGKSSDRLAAEFGISREDQD 208
[Close]
BLAST of mRNA_S-firma_M_contig9190.20140.1 vs. uniprot
Match: A0A7S4BDY3_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BDY3_CHRCT)

HSP 1 Score: 67.0 bits (162), Expect = 2.960e-12
Identity = 27/38 (71.05%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 QDIAPETPAIANYTTGEVMGHSSDRLSGRFGVSRQEQD 114
            +D+APE PAIAN+TTGEVMGH++DRL  RFG++R+EQD
Sbjct:  196 KDLAPEAPAIANFTTGEVMGHNTDRLCDRFGITREEQD 233
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9190.20140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTA9_9PHAE1.090e-1694.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCM0_9STRA1.300e-1586.84Acetyl-CoA acetyltransferase n=1 Tax=Tribonema min... [more]
A0A482RQT4_9ARCH1.110e-1486.49Acetyl-CoA C-acyltransferase (Fragment) n=1 Tax=ar... [more]
A0A7S2AT36_9STRA2.990e-1484.21Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7SYP3_9STRA3.590e-1478.95Beta-ketoacyl-thiolase n=1 Tax=Nannochloropsis gad... [more]
A0A812ZFW1_SYMMI6.590e-1478.95HADHB protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S2W305_9STRA5.010e-1376.32Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3M7M8_9STRA1.270e-1278.38Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2UU92_9STRA1.780e-1276.32Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4BDY3_CHRCT2.960e-1271.05Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9190contigS-firma_M_contig9190:3178..3795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue7.1e-13
Seed eggNOG ortholog2880.D7G3H4
Preferred nameHADHB
KEGG rclassRC00004,RC00326,RC00405,RC01702
KEGG koko:K07509
KEGG ReactionR00391,R00927,R01177,R03778,R03858,R03991,R04546,R04742,R04747
KEGG Pathwayko00062,ko00071,ko00280,ko01100,ko01110,ko01130,ko01212,map00062,map00071,map00280,map01100,map01110,map01130,map01212
KEGG ModuleM00085,M00087
GOsGO:0000062,GO:0000166,GO:0003674,GO:0003824,GO:0003857,GO:0003988,GO:0004300,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0005759,GO:0005783,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009062,GO:0009295,GO:0009987,GO:0010259,GO:0012505,GO:0016020,GO:0016042,GO:0016054,GO:0016408,GO:0016491,GO:0016507,GO:0016508,GO:0016509,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0016829,GO:0016835,GO:0016836,GO:0017076,GO:0019395,GO:0019752,GO:0019866,GO:0019867,GO:0030258,GO:0030554,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032991,GO:0033218,GO:0034440,GO:0036094,GO:0036125,GO:0042645,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046395,GO:0048037,GO:0048856,GO:0050662,GO:0051287,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:0097159,GO:0097367,GO:0098588,GO:0098798,GO:0098805,GO:1901265,GO:1901363,GO:1901567,GO:1901575,GO:1901681
EggNOG free text desc.long-chain-3-hydroxyacyl-CoA dehydrogenase activity
EggNOG OGsCOG0183@1,KOG1392@2759
EC2.3.1.16
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828746.1388602-CDS-S-firma_M_contig9190:3177..32631622828746.1388602-CDS-S-firma_M_contig9190:3177..3263Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9190 3178..3263 +
1697105137.1437533-CDS-S-firma_M_contig9190:3177..32631697105137.1437533-CDS-S-firma_M_contig9190:3177..3263Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9190 3178..3263 +
1622828746.1517882-CDS-S-firma_M_contig9190:3767..37951622828746.1517882-CDS-S-firma_M_contig9190:3767..3795Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9190 3768..3795 +
1697105137.1583617-CDS-S-firma_M_contig9190:3767..37951697105137.1583617-CDS-S-firma_M_contig9190:3767..3795Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9190 3768..3795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9190.20140.1prot_S-firma_M_contig9190.20140.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9190 3178..3795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9190.20140.1

>prot_S-firma_M_contig9190.20140.1 ID=prot_S-firma_M_contig9190.20140.1|Name=mRNA_S-firma_M_contig9190.20140.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=38bp
QDIAPETPAIANYTTGEVMGHSSDRLSGRFGVSRQEQD
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mRNA from alignment at S-firma_M_contig9190:3178..3795+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9190.20140.1 ID=mRNA_S-firma_M_contig9190.20140.1|Name=mRNA_S-firma_M_contig9190.20140.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=618bp|location=Sequence derived from alignment at S-firma_M_contig9190:3178..3795+ (Sphaerotrichia firma Sfir_13m male)
CAGGACATCGCTCCGGAGACGCCGGCGATCGCCAACTACACCACGGGAGA
GGTGATGGGCCACAGCAGCGACCGACTCTCGGGAAGGTGTGTGTGTGTGT
GTGTGGGTGTGCGTGTGTCTTGATCGCCTCTTGCTGTCCGTTTGTCGTTA
CCGGTGCTGCTTGTTGTGCCCTTGGCGAGAGGTATCGTAGCTGTTGTGGG
GCATTGTGGTGTTGGTGGCTATCTGTTGCTTGGTCTCCAGCCTCGTACAT
AACTAATTTTTTTCTCTCCTGTTTTGGTTGTGGCGTGGCCGAAGACGTTG
CGCTTCTTCGGAGAAGAGAGAAAACAAGCCTATTGCCAATTTAAATATTT
CTAAGGCGGTACAATAGAGGCATACCGATCGCGGCCGGGGGTTCAATCCT
GCCTCACGCTTCGTGAGCTTGAGTTCTCCGTGTTTTTGTGTTTGCCCTTC
CATCGACTTGGGATGGTTTTCACCGCCCTGAGTCTCGGGGTTCAGCGGAG
GAGTGATCTCTGGGTAGAGCGCATCACATCATTGGACACACCGCGTTTGA
TGAGGCTTGATTGTCGCGCTGTGCGCCCGTCCGATGTTAGGTTCGGGGTC
TCACGGCAGGAGCAGGAT
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Coding sequence (CDS) from alignment at S-firma_M_contig9190:3178..3795+

>mRNA_S-firma_M_contig9190.20140.1 ID=mRNA_S-firma_M_contig9190.20140.1|Name=mRNA_S-firma_M_contig9190.20140.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=228bp|location=Sequence derived from alignment at S-firma_M_contig9190:3178..3795+ (Sphaerotrichia firma Sfir_13m male)
CAGGACATCGCTCCGGAGACGCCGGCGATCGCCAACTACACCACGGGAGA
GGTGATGGGCCACAGCAGCGACCGACTCTCGGGAAGCAGGACATCGCTCC
GGAGACGCCGGCGATCGCCAACTACACCACGGGAGAGGTGATGGGCCACA
GCAGCGACCGACTCTCGGGAAGGTTCGGGGTCTCACGGCAGGAGCAGGAT
GTTCGGGGTCTCACGGCAGGAGCAGGAT
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