mRNA_S-firma_M_contig919.20138.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig919.20138.1 vs. uniprot
Match: D8LI42_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI42_ECTSI) HSP 1 Score: 257 bits (657), Expect = 1.060e-75 Identity = 150/201 (74.63%), Postives = 158/201 (78.61%), Query Frame = 2
Query: 2 PSNLVHCLRIMRVVEFESAMHDNVGADAD---AXXXEASPPASSPADGEAAPTASPPLPD-NDRPRTERATDRIGQLLVTLCRDKLAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVVEALMGGCLNSSMVWLLHYNKAMLDVVGELRHLCGLDGTAPKSPIVARKGGRGGYTPRSVSPV-KGPRKRSPKQGKGAG 589
PSNLVHCLRIMRVVEFESAM D G A A A G+ A SP LP+ +DRP+T+RAT+RIG+LLVTLC DK AGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVVEALMGGCLNSSMVWLLHYNKAMLDVVGELRHL GLDGTAPKSP RK RGGYTPRSVSP+ KG KRSP KG G
Sbjct: 289 PSNLVHCLRIMRVVEFESAMRDGTGGGGGTTAAGSFGAGDGGDDEASGDEA-RPSPSLPEGDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVVEALMGGCLNSSMVWLLHYNKAMLDVVGELRHLSGLDGTAPKSPTPGRKVVRGGYTPRSVSPMSKG--KRSPGPAKGGG 486
BLAST of mRNA_S-firma_M_contig919.20138.1 vs. uniprot
Match: A0A6H5KQH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH9_9PHAE) HSP 1 Score: 251 bits (641), Expect = 1.510e-73 Identity = 149/209 (71.29%), Postives = 156/209 (74.64%), Query Frame = 2
Query: 2 PSNLVHCLRIMRVVEFESAMHDNVGAD-----------ADAXXXEASPPASSPADGEAAPTASPPLP-DNDRPRTERATDRIGQLLVTLCRDKLAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVVEALMGGCLNSSMVWLLHYNKAMLDVVGELRHLCGLDGTAPKSPIVARKGGRGGYTPRSVSPV-KGPRKRSPKQGKGAG 589
PSNLVHCLRIMRVVEFESAM D G D E P+ EA P SP LP D+DRP+T+RAT+RIG+LLVTLC DK AGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETAR VVEALMGGCLNSSMVWLLHYNKAM DVVGELRHL GLDGTAPK P RK RGGYTPRSVSP+ KG KRSP KG G
Sbjct: 342 PSNLVHCLRIMRVVEFESAMRDGTGGXXXXXXXGSFGAGDGGDDE-------PSGDEARP--SPSLPEDDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARTVVEALMGGCLNSSMVWLLHYNKAMQDVVGELRHLGGLDGTAPKLPTPGRKVVRGGYTPRSVSPMSKG--KRSPGPAKGGG 539
BLAST of mRNA_S-firma_M_contig919.20138.1 vs. uniprot
Match: A0A1E7FHH9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHH9_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 6.950e-19 Identity = 53/153 (34.64%), Postives = 84/153 (54.90%), Query Frame = 2
Query: 2 PSNLVHCLRIMRVVEFESAMHDNVGADADAXXXEASPPASSPADGEAAPTASPPLPDNDRPRTERATDRIGQLLVTLCRDKLAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVVEALMGGCLNSSMVWLLHYNKAMLDVVGELRHLCG 460
P N++HCLR++RV+E + A +A + P+ +P + RAT ++ QLL TLC D+ VGEQ++PHL GLL+L+ ++YP +G HV + A V+ A CL++S+VW LH K + + +++ LCG
Sbjct: 101 PPNMIHCLRLLRVLELQHAAQTYKEYEAQGKTDQ-------------------PI----KPISSRATGKVSQLLCTLCTDQ--SVGEQLRPHLFGLLALSGASYPRSGVHVAKAASQVIIAFAQYCLSNSLVWFLHDRKMITHMTDDIKELCG 228
BLAST of mRNA_S-firma_M_contig919.20138.1 vs. uniprot
Match: B5Y3B7_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3B7_PHATC) HSP 1 Score: 90.5 bits (223), Expect = 1.530e-17 Identity = 64/182 (35.16%), Postives = 93/182 (51.10%), Query Frame = 2
Query: 2 PSNLVHCLRIMRVVEFESAM-------------HDNVG-----ADADAXXXEASPPASSPADGEAAPTASPPLPDNDRPRTERATDRIGQLLVTLCRDKLAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVVEALMGGCLNSSMVWLLHYNKAMLDVVGELRHLCGLDGTAPKSPIV 493
P NLVHCLR++RV+E + A HD+V AD + +P + T+S L +P AT ++ +LL LCRD VGEQ++PHL GL +L+ ++YPP+G HV A V+ A CLN +VW +H K +L + ++R LCGL + +P V
Sbjct: 161 PPNLVHCLRLLRVLELQHASGEVENAKESQVTKHDSVENEEGTADEAMEKEDQHQEEENPVGEIESDTSSAVL----QPIGLVATQKVSKLLCQLCRDP--SVGEQLRPHLFGLFALSGASYPPSGLHVALAASDVIVAFSEHCLNRQLVWFIHDRKMILHMTDDVRELCGLSESDSATPAV 336
BLAST of mRNA_S-firma_M_contig919.20138.1 vs. uniprot
Match: A0A7S3Q415_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q415_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.790e-16 Identity = 56/161 (34.78%), Postives = 86/161 (53.42%), Query Frame = 2
Query: 2 PSNLVHCLRIMRVVEFESAMHDNVGADADAXXXEASPPASSPADGEAAPTASPPLPDNDRPRTERATDRIGQLLVTLCRDKLAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVVEALMGGCLNSSMVWLLHYNKAMLDVVGELRHLCGLDGTAPKS 484
P NL+HC+R++RVVE ++A + XXX P R ++ AT+++ +LL LC D A VGEQ++PHL GLL+L+ + YP NG HV A V+ + GCL++S+VW LH ++ + +++ LCG+ A S
Sbjct: 229 PPNLIHCMRLLRVVELKAAHSQSAXXXXXXXXXXXXX-----XXXXXXXXXXXXXPQKVRSVSKAATEKVQKLLSLLCGD--ASVGEQLRPHLFGLLALSGARYPINGVHVARAASKVIVSFSKGCLSTSLVWFLHDRNMIVHMTDDVKELCGMTAAAASS 382
BLAST of mRNA_S-firma_M_contig919.20138.1 vs. uniprot
Match: A0A7S1CTZ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CTZ4_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 6.620e-16 Identity = 39/102 (38.24%), Postives = 64/102 (62.75%), Query Frame = 2
Query: 182 PRTERATDRIGQLLVTLCRDKLAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVVEALMGGCLNSSMVWLLHYNKAMLDVVGELRHLCGLDGTAPKSP 487
P + +A ++ +LL LC D VGEQ++PHL GLL+L+ ++YP +G H+ A V+ A CL++S+VW LH K ++ + +++ LC + G+ P SP
Sbjct: 10 PLSTQAAAKVSKLLCLLCSDP--SVGEQLRPHLFGLLALSGASYPNSGVHIAAAASDVILAFSRSCLSASLVWFLHDRKMIVHMTDDIKELCAMTGSGPSSP 109
BLAST of mRNA_S-firma_M_contig919.20138.1 vs. uniprot
Match: A0A7S1YSP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YSP2_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 8.910e-16 Identity = 41/102 (40.20%), Postives = 66/102 (64.71%), Query Frame = 2
Query: 197 ATDRIGQLLVTLCRDKLAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVVEALMGGCLNSSMVWLLHYNKAMLDVVGELRHLCGLDGTAPKSPIVARK 502
AT ++ +LL LC D VGEQ++PHL GLL+L+ ++YPP+G H+ A +V+ + CL++S+VW LH K ++ + +++ LCG+ TA SP A +
Sbjct: 4 ATAKVTRLLCLLCSDP--SVGEQLRPHLFGLLALSGASYPPSGIHIASAASSVILSFSENCLSASLVWFLHDRKMIVHMTDDIKELCGM--TAVSSPSSATR 101
BLAST of mRNA_S-firma_M_contig919.20138.1 vs. uniprot
Match: A0A7S4S7R3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S7R3_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 9.440e-16 Identity = 46/118 (38.98%), Postives = 73/118 (61.86%), Query Frame = 2
Query: 149 TASPPLPDNDRPRTERATDRIGQLLVTLCRDKLAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVVEALMGGCLNSSMVWLLHYNKAMLDVVGELRHLCGLDGTAPKSPIVARK 502
+ S P PD P + AT ++ +LL LC D VGEQ++PHL GLL+L+ ++YPP+G H+ A +V+ + CL++S+VW LH K ++ + +++ LCG+ TA SP A +
Sbjct: 77 SVSTPQPDPG-PVSTLATAKVARLLCLLCSDP--SVGEQLRPHLFGLLALSGASYPPSGIHIASAASSVILSFSENCLSASLVWFLHDRKMIVHMTDDIKELCGM--TAVSSPSSATR 189
BLAST of mRNA_S-firma_M_contig919.20138.1 vs. uniprot
Match: A0A448Z2Q0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z2Q0_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 8.080e-15 Identity = 49/163 (30.06%), Postives = 83/163 (50.92%), Query Frame = 2
Query: 2 PSNLVHCLRIMRVVEFESAMHDNVGADADAXXXEASPPASSPADGEAAPTASPPLPDNDRPRTERATDRIGQLLVTLCRDKLAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVVEALMGGCLNSSMVWLLHYNKAMLDVVGELRHLCGLDGTAPKSPI 490
P N++HCLR++RV+E + A +A + P+ +P + RAT ++ QLL LC + VGEQ++ HL GLL+L+ ++YP +G HV A V+ A CL++S+V LH K ++ + +++ LC G + + +
Sbjct: 156 PPNMIHCLRLLRVLELQHAAETYKEYEAQGKVDQ-------------------PI----KPISSRATAKVSQLLCNLCTNP--SVGEQLRLHLFGLLALSGASYPSSGVHVARAASQVIIAFAQNCLSNSLVLFLHDRKMIIHMTDDIKELCATKGDSENASV 293
BLAST of mRNA_S-firma_M_contig919.20138.1 vs. uniprot
Match: A0A7S1BDL2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BDL2_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 7.380e-11 Identity = 54/160 (33.75%), Postives = 77/160 (48.12%), Query Frame = 2
Query: 2 PSNLVHCLRIMRVVEFESAMHDNVGADADAXXXEASPPASSPADGEAAPTASPPLPDNDRPRTERATDRIGQLLVTLCRDKLAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVVEALMGGCLNSSMVWLLHY-----NKAMLDVVGE-LRHLCGL 463
PSNLVHCLR++R++E + A E A A P+ N ATDR+ LL+ LC VG ++ PHL L +L ++YPPN HV A VV A CL+SS+V +H N +++ ++ E ++ LCGL
Sbjct: 61 PSNLVHCLRMLRLLELQVVEK---------------------ATEEGAMEAVTPVSTN-------ATDRVASLLLILCVSP--SVGHELLPHLSRLFALVGASYPPNAIHVARAASDVVSAFARNCLDSSLVDHMHKSHMDDNDSIVVLLTEDIKDLCGL 190 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig919.20138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig919.20138.1 >prot_S-firma_M_contig919.20138.1 ID=prot_S-firma_M_contig919.20138.1|Name=mRNA_S-firma_M_contig919.20138.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=194bp MRVVEFESAMHDNVGADADADAEEASPPASSPADGEAAPTASPPLPDNDRback to top mRNA from alignment at S-firma_M_contig919:23857..25395+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig919.20138.1 ID=mRNA_S-firma_M_contig919.20138.1|Name=mRNA_S-firma_M_contig919.20138.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1539bp|location=Sequence derived from alignment at S-firma_M_contig919:23857..25395+ (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig919:23857..25395+ >mRNA_S-firma_M_contig919.20138.1 ID=mRNA_S-firma_M_contig919.20138.1|Name=mRNA_S-firma_M_contig919.20138.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1164bp|location=Sequence derived from alignment at S-firma_M_contig919:23857..25395+ (Sphaerotrichia firma Sfir_13m male)back to top |