mRNA_S-firma_M_contig919.20137.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig919.20137.1
Unique NamemRNA_S-firma_M_contig919.20137.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig919.20137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig919contigS-firma_M_contig919:22398..23125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size295
Cds size192
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig919.20137.1prot_S-firma_M_contig919.20137.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig919 22398..23024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828745.0849166-CDS-S-firma_M_contig919:22397..224271622828745.0849166-CDS-S-firma_M_contig919:22397..22427Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig919 22398..22427 +
1697105136.6405814-CDS-S-firma_M_contig919:22397..224271697105136.6405814-CDS-S-firma_M_contig919:22397..22427Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig919 22398..22427 +
1622828745.1026032-CDS-S-firma_M_contig919:22862..230241622828745.1026032-CDS-S-firma_M_contig919:22862..23024Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig919 22863..23024 +
1697105136.6528049-CDS-S-firma_M_contig919:22862..230241697105136.6528049-CDS-S-firma_M_contig919:22862..23024Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig919 22863..23024 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828745.1252072-UTR-S-firma_M_contig919:23024..231251622828745.1252072-UTR-S-firma_M_contig919:23024..23125Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig919 23025..23125 +
1697105136.6633642-UTR-S-firma_M_contig919:23024..231251697105136.6633642-UTR-S-firma_M_contig919:23024..23125Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig919 23025..23125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig919.20137.1

>prot_S-firma_M_contig919.20137.1 ID=prot_S-firma_M_contig919.20137.1|Name=mRNA_S-firma_M_contig919.20137.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=64bp
AIDTVPAQPQESSDGSGRSLSGATTTLTPRPAGGRGTGYPTAAFRATPAA
QRQQLRQLILRTC*
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mRNA from alignment at S-firma_M_contig919:22398..23125+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig919.20137.1 ID=mRNA_S-firma_M_contig919.20137.1|Name=mRNA_S-firma_M_contig919.20137.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=728bp|location=Sequence derived from alignment at S-firma_M_contig919:22398..23125+ (Sphaerotrichia firma Sfir_13m male)
GCGATTGACACCGTTCCAGCACAACCGCAGGTATGCATCGAAAGGGGGTC
GCTTCTCCTTTTATCTCAATGACCGTAAAACCACATTGTAGCGTAAGCCT
GAGTAGAGTCACCCTCTGTTCCTTCCTCCATCGAAAACGTGAGTCGGTCC
ACACCGTCTTCTTGTCATCGTGGTCGGCCGAGAGACAACGCAATTAGATG
GCGGCTGACAACCCCCAGCTTAGCTTGCCCTATGTTGTCGGGGGAGCTTC
ATGTCACTCGGCAGCTGCGAATATCCATTCTTCACAGATATCAACGGGTG
GGTGCCGCTCCTTGTGCAGCAGGCCTTCAGTCGGGTGCGCTTGAAAAAAT
GTTCTCAAGTATCCGTCGGAGAAGATCACACACACATCCCTCACACCAAG
CCGCGACACTCCATTACTTGCGTTGACGGAATACCCCACACCCTCCGGAA
CAATGGCCGCAACAGGAATCGTCAGATGGCAGTGGGAGAAGCCTTTCGGG
AGCCACAACCACCTTAACGCCCCGTCCGGCAGGCGGGAGAGGAACGGGCT
ATCCTACTGCTGCCTTCCGCGCCACGCCTGCAGCGCAGCGGCAGCAACTG
CGGCAGCTAATTCTTAGAACATGTTAGGATGGATTAACAAAAAGATTGGA
ACGTCGGGTGCCGGCAATAGCGGGTCTGGACAGGGGGGGAATGGCGGTGG
CGGCGCAGGAGGAGGAGGGTCCGGGAAC
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Coding sequence (CDS) from alignment at S-firma_M_contig919:22398..23125+

>mRNA_S-firma_M_contig919.20137.1 ID=mRNA_S-firma_M_contig919.20137.1|Name=mRNA_S-firma_M_contig919.20137.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=384bp|location=Sequence derived from alignment at S-firma_M_contig919:22398..23125+ (Sphaerotrichia firma Sfir_13m male)
GCGATTGACACCGTTCCAGCACAACCGCAGGCGATTGACACCGTTCCAGC
ACAACCGCAGGAATCGTCAGATGGCAGTGGGAGAAGCCTTTCGGGAGCCA
CAACCACCTTAACGCCCCGTCCGGCAGGCGGGAGAGGAACGGGCTATCCT
ACTGCTGCCTTCCGCGCCACGCCTGCAGCGCAGCGGCAGCAACTGCGGCA
GCTAATTCTTAGAACATGTTAGGAATCGTCAGATGGCAGTGGGAGAAGCC
TTTCGGGAGCCACAACCACCTTAACGCCCCGTCCGGCAGGCGGGAGAGGA
ACGGGCTATCCTACTGCTGCCTTCCGCGCCACGCCTGCAGCGCAGCGGCA
GCAACTGCGGCAGCTAATTCTTAGAACATGTTAG
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