mRNA_S-firma_M_contig9179.20119.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9179.20119.1
Unique NamemRNA_S-firma_M_contig9179.20119.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9179.20119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9179contigS-firma_M_contig9179:1597..3710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-09_002480.1
Exons3
Model size305
Cds size303
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9179.20119.1prot_S-firma_M_contig9179.20119.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9179 1598..3710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828743.7648952-CDS-S-firma_M_contig9179:1597..17501622828743.7648952-CDS-S-firma_M_contig9179:1597..1750Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9179 1598..1750 -
1697105135.8870301-CDS-S-firma_M_contig9179:1597..17501697105135.8870301-CDS-S-firma_M_contig9179:1597..1750Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9179 1598..1750 -
1622828743.780896-CDS-S-firma_M_contig9179:2840..29431622828743.780896-CDS-S-firma_M_contig9179:2840..2943Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9179 2841..2943 -
1697105135.907634-CDS-S-firma_M_contig9179:2840..29431697105135.907634-CDS-S-firma_M_contig9179:2840..2943Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9179 2841..2943 -
1622828743.795462-CDS-S-firma_M_contig9179:3663..37101622828743.795462-CDS-S-firma_M_contig9179:3663..3710Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9179 3664..3710 -
1697105135.9198964-CDS-S-firma_M_contig9179:3663..37101697105135.9198964-CDS-S-firma_M_contig9179:3663..3710Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9179 3664..3710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9179.20119.1

>prot_S-firma_M_contig9179.20119.1 ID=prot_S-firma_M_contig9179.20119.1|Name=mRNA_S-firma_M_contig9179.20119.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=101bp
PRVVSPEGNGILERAGTIEEMREKLKRLRLGVQATEGAAAAVPSMMGFAQ
ASPISEPRSSRLTIRLSSRACCDAQEKNARAEPARKLLADAVNVAQKAVE
E
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mRNA from alignment at S-firma_M_contig9179:1597..3710-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9179.20119.1 ID=mRNA_S-firma_M_contig9179.20119.1|Name=mRNA_S-firma_M_contig9179.20119.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2114bp|location=Sequence derived from alignment at S-firma_M_contig9179:1597..3710- (Sphaerotrichia firma Sfir_13m male)
CCGCGCGTAGTTTCCCCGGAGGGTAACGGGATTCTCGAGAGAGCAGGGTG
AGTTGCGGCATGCACACTTGCTCCCGCCACTATAAGTTCGGCAGTGTTGC
TTTTTTCTTTCGTGATTTTCGCTTCTTTCTTTTTCGCGATCTTGTTGCCT
CGTCAAACACCGAGGTAACGAGGGTAGGGACGACCAGGTCTTGTGGTTGG
ATGTTATGAGCGCGGCTCTACTTGGAACGAGTTGCGGTGAAGTTGTTTGG
TTGACTCGACGAACAAGCGTCCCACGGCTGCCTCGAACGCTGCAACAATT
TTCGGCAGCTCGGTAGAAAGGGACTGCGGTGCGTGCGTTTAGGTCAAAGC
GCGTGAACAACGAACCTTGTAGTATTGTTGCCTGTGGCGCGACGGAATCG
AGCCCTTACCTTATTTTTGTCGTGGTAGATATGCTGAGTACGATGTTACG
GACCATCCATCACATACAGTAGTCGCCGAACCAGCCACCAGTAGCAGAAG
TATAATTGAAACAGAGTCTCCCTGAAGGTGGCGTGGCTGCTGATGCGTGC
GTACGTTCCCCTTCGTACTTCGAGGGCCAAGACATCGGGCTGCATCTCCG
CCGCACCGATGCAACGCGCTCACTCACTCACTCACCCAACAAGCCGGCCT
GTCGCCGCTGTTTGTTGCGAGGACTCACACGTTCGCTAACTCTTTAGATG
GTCTTGTTCCGCTTTGGTGTCGCCACCGTGTCTACCATGTATCACTTTCG
TTTTGATGTGGAAGCAGGACAATTGAGGAGATGCGCGAGAAGCTGAAGCG
GCTGCGGCTCGGCGTTCAGGCAACGGAAGGTGCCGCGGCGGCGGTCCCAT
CGATGATGGGCTTCGCCCAGGTACTGCTCGTTTGTGGGAAGCATGTCAGT
TTTTCTCGGGTTTTGTTTGTTCTTTTGGTTTTTGAAAACGTTTTGTGCAT
GTGCCAAACCTGTCCACGTACTTAAAACGGAGGTGCAGTTCTTAGTTTGA
AAGGTCTTACTGTCTTTTGTTTCCATGTTTTGTGACGGCTGGGGTTGTGC
ATGTGTCTTTTGGTTTGTAGTGCTGCCGCGGGTGGCGGTGGTTTTATTCG
GCCTTCCTTGGTCTCGCCCGTGCCGTAAACATTTATCGGCTCTCAGAAGA
ATTGGCGTTTGCGCCGTTATCTTCGCGAATGTATAGCTATCGGTGATGTT
GTTCAGTGACTGCGTTGTGTGTTGGATGGACCGGTGAGATTGTCGTTTGA
ACACGGCAGAATTTCAGCTTTCCCCGCGCGCCCCAGTCCGGGCGTGACTG
TCCTTGTGCTTCAGTCTCGGCTGTGTCGGCTGGATGGCAAGGCTTCAAGC
GGAGTCAGTCGACATCGTGAATGCGAAGCCTGAGGGACGAATGGTTCGTG
GAAAATTAGATGAGAAATAGCAGATGAATGTCGCACGCGTTGCGTTCAGA
CCCTCCCCGGTGGACCACAAAACGCTGCTTTTATAGTAGATAGATAGCAC
CAGACAGAAGTGGGACTTGAGAGAGTGGGAAAGGACTGAAGTGCTAGAAC
ATGGAACGATTGCTGTGGATGAACATGACGACCATTTATATTCGTGAGAT
ATGAACGGAGTTTGCTTCACCTAAGAGTGGACCGCGGGAAGCTCCCATGG
AGTCATGAGCGGTGCACAGATTGACCAAGTTGGATGTCCTTCTGCCTCTC
AATGTTTGTTCTCTTCTCCCGGTCCCTTTTCTCATTTCTCGAGCAGACGC
GCCCGTAGTCGTCCCGACATTCGTATTCGGCCATGAGCAGCCCACGGCGC
GTTGCAAAAGCAGATTCGCTGATTTCTTCGCTTGTATTGCTTTCAGTGCT
CAAACCATGACGTCTGGTCTTCGAGCAGCCCAGATCAGTCTCAGCAAAGT
GCCGTTTCTAAGCCGACAAACTCCTCTCACCCTCGTCGCCCGCTCCCCCA
CCGACTCCAGGCTTCCCCGATCTCCGAGCCACGCTCGTCTCGGCTCACCA
TCCGCCTATCCTCCCGGGCGTGCTGCGACGCCCAAGAAAAAAATGCCCGA
GCGGAACCAGCCCGAAAGCTGCTAGCCGACGCCGTCAACGTCGCTCAGAA
GGCCGTGGAAGAGG
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Coding sequence (CDS) from alignment at S-firma_M_contig9179:1597..3710-

>mRNA_S-firma_M_contig9179.20119.1 ID=mRNA_S-firma_M_contig9179.20119.1|Name=mRNA_S-firma_M_contig9179.20119.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=606bp|location=Sequence derived from alignment at S-firma_M_contig9179:1597..3710- (Sphaerotrichia firma Sfir_13m male)
CCGCGCGTAGTTTCCCCGGAGGGTAACGGGATTCTCGAGAGAGCAGGCCG
CGCGTAGTTTCCCCGGAGGGTAACGGGATTCTCGAGAGAGCAGGGACAAT
TGAGGAGATGCGCGAGAAGCTGAAGCGGCTGCGGCTCGGCGTTCAGGCAA
CGGAAGGTGCCGCGGCGGCGGTCCCATCGATGATGGGCTTCGCCCAGGAC
AATTGAGGAGATGCGCGAGAAGCTGAAGCGGCTGCGGCTCGGCGTTCAGG
CAACGGAAGGTGCCGCGGCGGCGGTCCCATCGATGATGGGCTTCGCCCAG
GCTTCCCCGATCTCCGAGCCACGCTCGTCTCGGCTCACCATCCGCCTATC
CTCCCGGGCGTGCTGCGACGCCCAAGAAAAAAATGCCCGAGCGGAACCAG
CCCGAAAGCTGCTAGCCGACGCCGTCAACGTCGCTCAGAAGGCCGTGGAA
GAGGCTTCCCCGATCTCCGAGCCACGCTCGTCTCGGCTCACCATCCGCCT
ATCCTCCCGGGCGTGCTGCGACGCCCAAGAAAAAAATGCCCGAGCGGAAC
CAGCCCGAAAGCTGCTAGCCGACGCCGTCAACGTCGCTCAGAAGGCCGTG
GAAGAG
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